Wall clock time and date at job start Sun Mar 29 2020 22:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34662 * 125.80474 * 2 1 4 4 C 1.37995 * 107.37482 * 180.02562 * 3 2 1 5 5 C 1.47922 * 126.38236 * 179.97438 * 4 3 2 6 6 C 1.40463 * 120.79411 * 180.02562 * 5 4 3 7 7 N 1.31564 * 119.09543 * 179.97438 * 6 5 4 8 8 C 1.33672 * 120.82752 * 359.97438 * 7 6 5 9 9 C 1.41010 * 119.12638 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00687 * 0.02562 * 9 8 7 11 11 C 1.40095 * 119.99778 * 180.02562 * 9 8 7 12 12 N 1.30691 * 120.00024 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 120.00122 * 179.72722 * 11 9 8 14 14 H 1.48504 * 109.46764 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46948 * 120.00139 * 13 11 9 16 16 H 1.48495 * 109.47113 * 240.00265 * 13 11 9 17 17 N 1.33668 * 121.74066 * 0.27988 * 8 7 6 18 18 C 1.31574 * 120.82681 * 359.43200 * 17 8 7 19 19 C 1.41132 * 107.23271 * 0.23228 * 4 3 2 20 20 N 1.30530 * 108.11694 * 359.61128 * 19 4 3 21 21 H 1.08999 * 109.47161 * 89.99769 * 1 2 3 22 22 H 1.09003 * 109.46952 * 209.99525 * 1 2 3 23 23 H 1.08999 * 109.46850 * 329.99116 * 1 2 3 24 24 H 1.08007 * 126.31425 * 0.03225 * 3 2 1 25 25 H 1.08005 * 120.44942 * 359.96040 * 6 5 4 26 26 H 0.97000 * 119.99763 * 179.97438 * 12 11 9 27 27 H 1.08002 * 120.44764 * 180.29935 * 18 17 8 28 28 H 1.08003 * 125.93883 * 179.74418 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2528 1.0921 0.0000 4 6 3.5620 0.6559 -0.0006 5 6 4.7709 1.5083 -0.0013 6 6 6.0539 0.9366 -0.0024 7 7 7.1062 1.7262 -0.0036 8 6 6.9651 3.0555 -0.0042 9 6 8.1176 3.8680 -0.0049 10 1 9.0979 3.4149 -0.0053 11 6 7.9909 5.2632 -0.0051 12 7 6.8046 5.8117 -0.0041 13 14 9.5176 6.3398 0.0017 14 1 10.7289 5.4807 0.0060 15 1 9.5238 7.1975 -1.2105 16 1 9.5136 7.1967 1.2144 17 7 5.7605 3.6348 0.0018 18 6 4.6632 2.9088 -0.0025 19 6 3.5325 -0.7551 -0.0064 20 7 2.2837 -1.1350 -0.0007 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 1.9212 2.1200 0.0005 25 1 6.1749 -0.1367 -0.0021 26 1 6.7170 6.7777 -0.0038 27 1 3.6930 3.3833 -0.0025 28 1 4.3935 -1.4071 -0.0122 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240295124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:52 Heat of formation + Delta-G solvation = 120.834325 kcal Electronic energy + Delta-G solvation = -14722.645061 eV Core-core repulsion = 12161.513716 eV Total energy + Delta-G solvation = -2561.131345 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57660 -38.67959 -34.01140 -33.04593 -31.89315 -31.12779 -28.82571 -27.02518 -25.23154 -22.93113 -22.13144 -20.18643 -19.83372 -17.86549 -16.71620 -15.76766 -15.12746 -15.02649 -14.45089 -14.23287 -13.48901 -13.04031 -12.74544 -12.71174 -12.44543 -12.39173 -11.72178 -11.33335 -11.28630 -10.75317 -10.43712 -10.27484 -9.68539 -9.18344 -9.14932 -9.04455 -8.82113 -7.32451 -7.10741 -6.58280 -4.67649 2.04065 2.51096 2.85969 2.96989 3.02697 3.03407 3.09642 3.70382 3.84693 4.67115 4.75205 5.18742 5.26384 5.38823 5.42034 5.80453 5.86698 5.93782 6.06029 6.10219 6.30906 6.37481 6.90327 7.00598 7.11788 7.33220 7.44259 7.66284 8.11595 8.14010 8.46581 8.54046 9.10162 10.07159 10.25336 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.065294 B = 0.005585 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.726896 B = 5012.391610 C = 5425.970598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.381 5.381 3 C 0.016 3.984 4 C -0.121 4.121 5 C -0.276 4.276 6 C 0.177 3.823 7 N -0.592 5.592 8 C 0.382 3.618 9 C -0.389 4.389 10 H 0.094 0.906 11 C 0.063 3.937 12 N -0.705 5.705 13 Si 0.919 3.081 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.271 1.271 17 N -0.506 5.506 18 C 0.169 3.831 19 C 0.041 3.959 20 N -0.310 5.310 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.170 0.830 25 H 0.129 0.871 26 H 0.276 0.724 27 H 0.125 0.875 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 -3.618 0.057 9.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.165 5.165 3 C -0.129 4.129 4 C -0.133 4.133 5 C -0.287 4.287 6 C 0.002 3.998 7 N -0.311 5.311 8 C 0.147 3.853 9 C -0.423 4.423 10 H 0.113 0.887 11 C -0.164 4.164 12 N -0.326 5.326 13 Si 0.742 3.258 14 H -0.180 1.180 15 H -0.196 1.196 16 H -0.196 1.196 17 N -0.222 5.222 18 C -0.007 4.007 19 C -0.144 4.144 20 N -0.132 5.132 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.187 0.813 25 H 0.147 0.853 26 H 0.087 0.913 27 H 0.143 0.857 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.393 -3.701 0.072 9.173 hybrid contribution 0.110 0.658 -0.018 0.668 sum -8.282 -3.043 0.054 8.824 Atomic orbital electron populations 1.21706 0.75099 1.03876 1.02743 1.48016 1.06012 1.03912 1.58518 1.22667 0.90758 0.92673 1.06780 1.19094 0.91880 0.92111 1.10208 1.19126 0.92075 0.94354 1.23166 1.22546 0.87852 0.98280 0.91076 1.68634 1.32825 1.06432 1.23167 1.19917 0.91148 0.85587 0.88659 1.19404 0.92934 0.89844 1.40154 0.88749 1.26167 0.97645 0.98972 0.93644 1.70153 1.23612 1.11950 1.26895 0.86078 0.81435 0.79600 0.78662 1.18043 1.19637 1.19634 1.69326 0.97511 1.37344 1.18052 1.22913 0.97561 0.89184 0.91082 1.23863 0.94511 0.94929 1.01125 1.76940 1.02205 1.08550 1.25529 0.91376 0.89870 0.89909 0.81334 0.85349 0.91311 0.85722 0.80392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.04 11.45 59.85 0.69 1.73 15 2 N -0.38 -5.76 3.99 -67.51 -0.27 -6.03 15 3 C 0.02 0.26 10.98 -16.40 -0.18 0.08 15 4 C -0.12 -2.28 6.09 -104.92 -0.64 -2.92 15 5 C -0.28 -6.08 5.94 -104.26 -0.62 -6.70 15 6 C 0.18 4.05 10.87 -16.83 -0.18 3.86 15 7 N -0.59 -15.65 10.34 -12.41 -0.13 -15.78 15 8 C 0.38 10.71 7.35 -158.15 -1.16 9.55 15 9 C -0.39 -10.55 9.35 -37.84 -0.35 -10.90 15 10 H 0.09 2.46 7.85 -52.49 -0.41 2.05 15 11 C 0.06 1.57 5.50 -17.34 -0.10 1.48 15 12 N -0.70 -18.18 11.40 55.55 0.63 -17.55 15 13 Si 0.92 18.16 29.56 -169.99 -5.02 13.14 15 14 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 15 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 17 N -0.51 -13.83 7.82 -12.41 -0.10 -13.93 15 18 C 0.17 3.98 10.85 -16.82 -0.18 3.80 15 19 C 0.04 0.72 11.47 -17.01 -0.20 0.52 15 20 N -0.31 -5.33 12.51 30.84 0.39 -4.95 15 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.08 0.73 8.14 -51.93 -0.42 0.30 15 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.17 2.30 7.41 -52.48 -0.39 1.91 15 25 H 0.13 2.46 7.20 -52.48 -0.38 2.09 15 26 H 0.28 6.34 8.29 -40.82 -0.34 6.00 15 27 H 0.13 2.54 7.18 -52.49 -0.38 2.16 15 28 H 0.18 2.63 7.44 -52.48 -0.39 2.24 15 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -32.05 256.58 -5.91 -37.95 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.35 Total: 2.78 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.93 Total: 0.50 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.52 Total: -58.24 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.05 -5.91 -37.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240295124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.789 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds