Wall clock time and date at job start Sun Mar 29 2020 22:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34662 * 125.80474 * 2 1 4 4 C 1.37995 * 107.37482 * 180.02562 * 3 2 1 5 5 C 1.47922 * 126.38236 * 179.97438 * 4 3 2 6 6 C 1.40463 * 120.79411 * 180.02562 * 5 4 3 7 7 N 1.31564 * 119.09543 * 179.97438 * 6 5 4 8 8 C 1.33672 * 120.82752 * 359.97438 * 7 6 5 9 9 C 1.41010 * 119.12638 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00687 * 0.02562 * 9 8 7 11 11 C 1.40095 * 119.99778 * 180.02562 * 9 8 7 12 12 N 1.30691 * 120.00024 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 120.00122 * 179.72722 * 11 9 8 14 14 H 1.48504 * 109.46764 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46948 * 120.00139 * 13 11 9 16 16 H 1.48495 * 109.47113 * 240.00265 * 13 11 9 17 17 N 1.33668 * 121.74066 * 0.27988 * 8 7 6 18 18 C 1.31574 * 120.82681 * 359.43200 * 17 8 7 19 19 C 1.41132 * 107.23271 * 0.23228 * 4 3 2 20 20 N 1.30530 * 108.11694 * 359.61128 * 19 4 3 21 21 H 1.08999 * 109.47161 * 89.99769 * 1 2 3 22 22 H 1.09003 * 109.46952 * 209.99525 * 1 2 3 23 23 H 1.08999 * 109.46850 * 329.99116 * 1 2 3 24 24 H 1.08007 * 126.31425 * 0.03225 * 3 2 1 25 25 H 1.08005 * 120.44942 * 359.96040 * 6 5 4 26 26 H 0.97000 * 119.99763 * 179.97438 * 12 11 9 27 27 H 1.08002 * 120.44764 * 180.29935 * 18 17 8 28 28 H 1.08003 * 125.93883 * 179.74418 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2528 1.0921 0.0000 4 6 3.5620 0.6559 -0.0006 5 6 4.7709 1.5083 -0.0013 6 6 6.0539 0.9366 -0.0024 7 7 7.1062 1.7262 -0.0036 8 6 6.9651 3.0555 -0.0042 9 6 8.1176 3.8680 -0.0049 10 1 9.0979 3.4149 -0.0053 11 6 7.9909 5.2632 -0.0051 12 7 6.8046 5.8117 -0.0041 13 14 9.5176 6.3398 0.0017 14 1 10.7289 5.4807 0.0060 15 1 9.5238 7.1975 -1.2105 16 1 9.5136 7.1967 1.2144 17 7 5.7605 3.6348 0.0018 18 6 4.6632 2.9088 -0.0025 19 6 3.5325 -0.7551 -0.0064 20 7 2.2837 -1.1350 -0.0007 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 1.9212 2.1200 0.0005 25 1 6.1749 -0.1367 -0.0021 26 1 6.7170 6.7777 -0.0038 27 1 3.6930 3.3833 -0.0025 28 1 4.3935 -1.4071 -0.0122 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240295124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:51 Heat of formation + Delta-G solvation = 99.579944 kcal Electronic energy + Delta-G solvation = -14723.566720 eV Core-core repulsion = 12161.513716 eV Total energy + Delta-G solvation = -2562.053004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.90700 -40.52415 -35.79428 -34.32883 -33.76390 -32.73834 -30.37355 -28.44931 -26.69662 -24.71275 -23.85350 -21.51097 -21.28810 -19.71540 -18.10751 -17.50886 -16.86559 -16.23521 -16.09736 -15.53039 -14.87507 -14.84759 -14.41989 -14.18087 -13.50045 -13.45405 -13.20355 -12.99370 -12.90076 -12.64858 -11.91732 -11.77481 -11.40096 -11.11635 -10.95818 -10.50269 -10.27222 -9.22504 -8.71593 -8.41279 -6.59210 0.44697 1.08197 1.13650 1.42273 1.48613 1.59233 1.77354 2.15903 2.22335 2.85943 3.73047 4.00120 4.00454 4.06959 4.15207 4.37175 4.46030 4.49597 4.59285 4.72951 4.77353 4.92304 5.09299 5.29440 5.59783 5.70662 5.89835 6.18262 6.22411 6.55477 6.64951 6.81948 7.23678 8.25000 8.38806 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.065294 B = 0.005585 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.726896 B = 5012.391610 C = 5425.970598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.374 5.374 3 C 0.041 3.959 4 C -0.167 4.167 5 C -0.250 4.250 6 C 0.158 3.842 7 N -0.619 5.619 8 C 0.353 3.647 9 C -0.433 4.433 10 H 0.088 0.912 11 C 0.023 3.977 12 N -0.742 5.742 13 Si 0.999 3.001 14 H -0.257 1.257 15 H -0.261 1.261 16 H -0.261 1.261 17 N -0.537 5.537 18 C 0.148 3.852 19 C 0.041 3.959 20 N -0.328 5.328 21 H 0.086 0.914 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.198 0.802 25 H 0.162 0.838 26 H 0.285 0.715 27 H 0.154 0.846 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 -3.712 0.068 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.156 5.156 3 C -0.106 4.106 4 C -0.180 4.180 5 C -0.260 4.260 6 C -0.014 4.014 7 N -0.338 5.338 8 C 0.116 3.884 9 C -0.468 4.468 10 H 0.106 0.894 11 C -0.201 4.201 12 N -0.364 5.364 13 Si 0.818 3.182 14 H -0.180 1.180 15 H -0.185 1.185 16 H -0.186 1.186 17 N -0.254 5.254 18 C -0.026 4.026 19 C -0.144 4.144 20 N -0.151 5.151 21 H 0.104 0.896 22 H 0.112 0.888 23 H 0.130 0.870 24 H 0.214 0.786 25 H 0.179 0.821 26 H 0.096 0.904 27 H 0.172 0.828 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.168 -3.866 0.083 10.878 hybrid contribution 0.292 0.478 -0.024 0.560 sum -9.876 -3.388 0.059 10.441 Atomic orbital electron populations 1.22197 0.71807 1.05951 1.04604 1.48516 1.07869 1.03010 1.56237 1.23105 0.90137 0.94148 1.03201 1.19019 0.91793 0.92620 1.14534 1.19346 0.93119 0.94195 1.19385 1.23147 0.87832 0.99633 0.90831 1.68640 1.34438 1.06333 1.24392 1.20291 0.91963 0.86424 0.89713 1.19660 0.92631 0.91423 1.43065 0.89379 1.27065 1.01137 0.99394 0.92486 1.70201 1.25764 1.12789 1.27676 0.84916 0.76797 0.77317 0.79185 1.18023 1.18537 1.18559 1.69282 0.98132 1.38514 1.19424 1.23453 0.97887 0.90171 0.91105 1.24129 0.95310 0.94575 1.00413 1.76934 1.02277 1.09619 1.26243 0.89563 0.88806 0.86984 0.78556 0.82099 0.90424 0.82848 0.78819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 11.45 127.77 1.46 2.88 15 2 N -0.37 -9.98 3.99 -367.49 -1.47 -11.44 15 3 C 0.04 1.21 10.98 84.20 0.92 2.13 15 4 C -0.17 -5.97 6.09 -20.06 -0.12 -6.09 15 5 C -0.25 -10.87 5.94 -19.63 -0.12 -10.99 15 6 C 0.16 7.25 10.87 85.28 0.93 8.18 15 7 N -0.62 -33.68 10.34 -193.19 -2.00 -35.68 15 8 C 0.35 20.54 7.35 134.87 0.99 21.53 15 9 C -0.43 -24.46 9.35 23.40 0.22 -24.24 15 10 H 0.09 4.83 7.85 -2.91 -0.02 4.81 15 11 C 0.02 1.16 5.50 85.31 0.47 1.63 15 12 N -0.74 -39.15 11.40 21.85 0.25 -38.91 15 13 Si 1.00 37.78 29.56 68.60 2.03 39.81 15 14 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 15 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 16 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 17 N -0.54 -30.07 7.82 -193.18 -1.51 -31.58 15 18 C 0.15 6.97 10.85 85.27 0.93 7.90 15 19 C 0.04 1.33 11.47 85.60 0.98 2.31 15 20 N -0.33 -10.42 12.51 -56.34 -0.70 -11.13 15 21 H 0.09 1.06 8.14 -2.39 -0.02 1.04 15 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.11 1.08 8.14 -2.39 -0.02 1.06 15 24 H 0.20 4.52 7.41 -2.91 -0.02 4.50 15 25 H 0.16 6.07 7.20 -2.91 -0.02 6.05 15 26 H 0.28 13.28 8.29 -92.71 -0.77 12.51 15 27 H 0.15 6.05 7.18 -2.91 -0.02 6.02 15 28 H 0.20 5.38 7.44 -2.91 -0.02 5.36 15 Total: -1.00 -71.63 256.58 4.44 -67.18 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.19 Total: 16.51 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 6.66 Total: 5.24 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -5.43 Total: -128.74 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -71.63 4.44 -67.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240295124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.764 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds