Wall clock time and date at job start Sun Mar 29 2020 22:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86799 * 120.00337 * 2 1 4 4 H 1.48508 * 109.46912 * 239.99607 * 3 2 1 5 5 H 1.48501 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47416 * 119.99756 * 3 2 1 7 7 C 1.40030 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00402 * 163.18765 * 7 2 1 9 9 C 1.40931 * 120.00049 * 343.18733 * 7 2 1 10 10 C 1.40987 * 120.09649 * 154.10968 * 9 7 2 11 11 C 1.36163 * 119.89875 * 179.74131 * 10 9 7 12 12 C 1.40184 * 120.10004 * 0.55104 * 11 10 9 13 13 C 1.47275 * 119.90508 * 179.71693 * 12 11 10 14 14 C 1.32189 * 118.88293 * 244.98040 * 13 12 11 15 15 C 1.50268 * 122.56221 * 180.34932 * 14 13 12 16 16 O 1.42887 * 110.09463 * 344.37203 * 15 14 13 17 17 C 1.43275 * 113.10239 * 50.54474 * 16 15 14 18 18 C 1.50422 * 118.88115 * 64.71614 * 13 12 11 19 19 C 1.40191 * 120.18952 * 359.69853 * 12 11 10 20 20 C 1.36156 * 120.09816 * 0.02562 * 19 12 11 21 21 H 0.97001 * 119.99724 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.05005 * 359.97438 * 10 9 7 23 23 H 1.08002 * 119.95034 * 180.27141 * 11 10 9 24 24 H 1.07994 * 118.71568 * 0.36456 * 14 13 12 25 25 H 1.09001 * 109.36740 * 104.56400 * 15 14 13 26 26 H 1.09002 * 109.36291 * 224.18164 * 15 14 13 27 27 H 1.08993 * 109.63696 * 50.83310 * 17 16 15 28 28 H 1.09004 * 109.64003 * 171.23573 * 17 16 15 29 29 H 1.09001 * 109.45120 * 283.37030 * 18 13 12 30 30 H 1.08998 * 109.45410 * 43.30743 * 18 13 12 31 31 H 1.07997 * 119.94851 * 180.02562 * 19 12 11 32 32 H 1.08000 * 120.04780 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6962 -1.2125 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0080 -1.2127 0.0005 8 1 3.0533 -1.2329 -0.2700 9 6 1.3485 -2.4070 0.3541 10 6 1.8142 -3.6438 -0.1368 11 6 1.1772 -4.7957 0.2116 12 6 0.0528 -4.7520 1.0477 13 6 -0.6367 -5.9999 1.4168 14 6 -1.8777 -6.1901 1.0032 15 6 -2.6609 -7.4282 1.3376 16 8 -1.7831 -8.4515 1.8107 17 6 -0.9076 -8.0037 2.8527 18 6 0.0973 -7.0174 2.2466 19 6 -0.4168 -3.5238 1.5339 20 6 0.2175 -2.3677 1.1951 21 1 -0.4850 0.8401 -0.0004 22 1 2.6773 -3.6779 -0.7852 23 1 1.5359 -5.7440 -0.1605 24 1 -2.3468 -5.4260 0.4012 25 1 -3.3935 -7.1947 2.1101 26 1 -3.1788 -7.7802 0.4454 27 1 -1.4881 -7.5095 3.6317 28 1 -0.3767 -8.8561 3.2767 29 1 0.8057 -7.5563 1.6174 30 1 0.6358 -6.5120 3.0483 31 1 -1.2831 -3.4947 2.1782 32 1 -0.1453 -1.4220 1.5697 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242075231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:08 Heat of formation + Delta-G solvation = -39.574481 kcal Electronic energy + Delta-G solvation = -15141.027379 eV Core-core repulsion = 12644.187778 eV Total energy + Delta-G solvation = -2496.839600 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42110 -39.19786 -36.08701 -34.52086 -31.99373 -31.42533 -31.10794 -27.73721 -25.32352 -24.60993 -22.73007 -22.32087 -19.30011 -19.04688 -17.71155 -17.07506 -17.04350 -15.96891 -15.79452 -15.30469 -15.23386 -14.68446 -14.33852 -13.94560 -13.64616 -13.55371 -13.26418 -13.07033 -12.78502 -12.60696 -12.32882 -12.19386 -11.73783 -11.41154 -11.33079 -11.08142 -10.50813 -9.76388 -9.50456 -9.08856 -8.68786 -6.36676 0.74594 1.14586 1.28783 1.37043 1.48780 1.56259 2.18198 2.68307 2.99953 3.66215 3.97638 4.02632 4.16696 4.35478 4.41825 4.46285 4.47543 4.59576 4.72235 4.82562 4.90511 5.03460 5.06922 5.10523 5.29920 5.36936 5.56405 5.67534 5.96414 6.02233 6.07494 6.17071 6.26540 6.33277 6.63930 6.87645 6.99092 8.27605 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.062564 B = 0.005451 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.436654 B = 5135.647165 C = 5336.457953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.082 3.918 10 C -0.243 4.243 11 C -0.076 4.076 12 C -0.194 4.194 13 C -0.049 4.049 14 C -0.222 4.222 15 C 0.100 3.900 16 O -0.397 6.397 17 C 0.062 3.938 18 C -0.114 4.114 19 C -0.088 4.088 20 C -0.190 4.190 21 H 0.290 0.710 22 H 0.098 0.902 23 H 0.111 0.889 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 -8.251 4.377 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.079 3.921 10 C -0.263 4.263 11 C -0.094 4.094 12 C -0.195 4.195 13 C -0.049 4.049 14 C -0.240 4.240 15 C 0.024 3.976 16 O -0.316 6.316 17 C -0.014 4.014 18 C -0.151 4.151 19 C -0.106 4.106 20 C -0.209 4.209 21 H 0.101 0.899 22 H 0.116 0.884 23 H 0.129 0.871 24 H 0.119 0.881 25 H 0.093 0.907 26 H 0.132 0.868 27 H 0.079 0.921 28 H 0.138 0.862 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.816 -8.284 4.283 9.742 hybrid contribution 0.354 1.447 -0.237 1.508 sum -2.463 -6.837 4.046 8.318 Atomic orbital electron populations 1.69855 1.09164 1.30853 1.34920 1.26837 0.95507 1.04695 0.91038 0.85207 0.78770 0.75313 0.80167 1.18251 1.19048 1.18364 1.19817 0.98139 0.92468 1.42143 0.90402 1.18032 0.91876 0.93157 0.88998 1.20870 1.04703 0.93307 1.07377 1.20589 0.94794 0.96850 0.97143 1.18582 1.00676 0.92331 1.07901 1.19852 0.94372 0.93463 0.97201 1.23385 0.96741 1.00438 1.03445 1.21461 0.90840 0.85071 1.00206 1.88027 1.52032 1.36169 1.55364 1.22812 0.91077 0.98469 0.89055 1.21142 0.98803 0.95787 0.99349 1.20693 0.98349 0.92268 0.99318 1.20944 1.00455 0.97046 1.02471 0.89929 0.88359 0.87110 0.88126 0.90745 0.86842 0.92058 0.86226 0.90174 0.89999 0.88100 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.35 10.95 21.84 0.24 -43.11 16 2 C 0.03 1.76 5.15 85.28 0.44 2.20 16 3 Si 0.99 38.02 29.59 68.60 2.03 40.05 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.50 -27.10 9.03 23.36 0.21 -26.89 16 8 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 9 C 0.08 4.52 5.57 -21.27 -0.12 4.40 16 10 C -0.24 -12.29 9.73 22.46 0.22 -12.08 16 11 C -0.08 -3.45 9.67 22.26 0.22 -3.23 16 12 C -0.19 -8.58 5.22 -19.95 -0.10 -8.68 16 13 C -0.05 -1.76 5.30 -18.59 -0.10 -1.86 16 14 C -0.22 -7.30 9.58 24.53 0.23 -7.06 16 15 C 0.10 2.56 7.04 71.10 0.50 3.06 16 16 O -0.40 -10.82 10.83 -148.98 -1.61 -12.43 16 17 C 0.06 1.47 6.89 72.08 0.50 1.96 16 18 C -0.11 -3.31 6.05 29.86 0.18 -3.13 16 19 C -0.09 -4.22 9.61 22.26 0.21 -4.00 16 20 C -0.19 -10.23 8.62 22.46 0.19 -10.03 16 21 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 22 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 23 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 24 H 0.10 3.55 7.99 -2.91 -0.02 3.53 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.10 5.66 6.18 -2.91 -0.02 5.64 16 Total: -1.00 -60.36 273.48 4.34 -56.02 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 1.10 Total: 24.83 kcal Atomic # 6 Polarization: -67.94 SS G_CDS: 2.58 Total: -65.36 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.24 Total: -43.11 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.61 Total: -12.43 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -60.36 4.34 -56.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242075231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.443 kcal (2) G-P(sol) polarization free energy of solvation -60.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds