Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47170 * 239.99152 * 3 2 1 5 5 H 1.48498 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47297 * 119.99864 * 3 2 1 7 7 C 1.39924 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00615 * 162.67055 * 7 2 1 9 9 C 1.41431 * 119.99929 * 342.67683 * 7 2 1 10 10 C 1.40803 * 120.18074 * 155.12488 * 9 7 2 11 11 C 1.37698 * 120.03424 * 180.24895 * 10 9 7 12 12 C 1.38387 * 120.40065 * 359.49787 * 11 10 9 13 13 C 1.39880 * 120.35846 * 0.24991 * 12 11 10 14 14 C 1.47838 * 120.02083 * 180.02562 * 13 12 11 15 15 C 1.31622 * 118.84554 * 114.73516 * 14 13 12 16 16 C 1.50255 * 122.64293 * 180.11073 * 15 14 13 17 17 O 1.42893 * 110.16138 * 344.85202 * 16 15 14 18 18 C 1.43287 * 113.08005 * 50.23616 * 17 16 15 19 19 C 1.50408 * 118.84895 * 295.00196 * 14 13 12 20 20 C 1.38966 * 119.95645 * 0.02562 * 13 12 11 21 21 H 0.96998 * 119.99589 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.98330 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.80258 * 179.77075 * 11 10 9 24 24 H 1.08004 * 119.82373 * 180.27342 * 12 11 10 25 25 H 1.07998 * 118.67979 * 0.38405 * 15 14 13 26 26 H 1.08998 * 109.51202 * 224.53054 * 16 15 14 27 27 H 1.09004 * 109.06266 * 104.88785 * 16 15 14 28 28 H 1.09005 * 109.63748 * 171.62473 * 18 17 16 29 29 H 1.08998 * 109.64126 * 50.99517 * 18 17 16 30 30 H 1.09003 * 109.45565 * 283.38534 * 19 14 13 31 31 H 1.08996 * 109.45478 * 43.34462 * 19 14 13 32 32 H 1.08003 * 120.19963 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0512 -1.2332 -0.2780 9 6 1.3490 -2.4086 0.3658 10 6 1.8217 -3.6488 -0.1043 11 6 1.1748 -4.8119 0.2490 12 6 0.0647 -4.7727 1.0745 13 6 -0.4160 -3.5503 1.5553 14 6 -1.6021 -3.5172 2.4371 15 6 -1.4583 -3.1079 3.6798 16 6 -2.6043 -3.0425 4.6494 17 8 -3.8470 -3.1341 3.9499 18 6 -3.8980 -4.2376 3.0375 19 6 -2.9297 -3.9581 1.8846 20 6 0.2221 -2.3670 1.2035 21 1 -0.4849 0.8401 -0.0004 22 1 2.6901 -3.6876 -0.7452 23 1 1.5384 -5.7608 -0.1167 24 1 -0.4330 -5.6910 1.3493 25 1 -0.4780 -2.8027 4.0148 26 1 -2.5656 -2.1002 5.1957 27 1 -2.5234 -3.8715 5.3525 28 1 -4.9105 -4.3443 2.6479 29 1 -3.6016 -5.1520 3.5514 30 1 -3.3382 -3.1716 1.2500 31 1 -2.7947 -4.8658 1.2964 32 1 -0.1460 -1.4209 1.5721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242076223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = -25.104747 kcal Electronic energy + Delta-G solvation = -15393.622751 eV Core-core repulsion = 12897.410605 eV Total energy + Delta-G solvation = -2496.212146 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10809 -37.38993 -34.17465 -33.18602 -30.76338 -29.64193 -28.97282 -25.27440 -24.64348 -23.39963 -20.92058 -20.42908 -17.81208 -17.15676 -15.97734 -15.85519 -15.05653 -14.73198 -14.64563 -13.64651 -13.53967 -13.07613 -12.64184 -12.51202 -12.37200 -11.83818 -11.61489 -11.25881 -11.12388 -10.96538 -10.64012 -10.49001 -10.35106 -9.76047 -9.67971 -9.20371 -9.10365 -8.37365 -7.41784 -7.27575 -6.75270 -4.37137 2.42921 2.84360 3.05938 3.07431 3.09029 3.23543 3.93050 4.11579 4.58475 5.16606 5.27464 5.36348 5.47244 5.60800 5.68166 5.71524 5.91522 6.00701 6.19221 6.30554 6.34045 6.47310 6.75668 7.03584 7.06772 7.18196 7.26914 7.34294 7.50528 7.56446 7.85263 8.02351 8.04141 8.26805 8.59956 8.88072 8.93998 10.19211 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.008050 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.917302 B = 3477.529257 C = 4225.010696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.077 0.923 9 C 0.107 3.893 10 C -0.224 4.224 11 C -0.096 4.096 12 C -0.227 4.227 13 C -0.055 4.055 14 C -0.036 4.036 15 C -0.223 4.223 16 C 0.100 3.900 17 O -0.384 6.384 18 C 0.061 3.939 19 C -0.116 4.116 20 C -0.142 4.142 21 H 0.281 0.719 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 -3.833 5.115 7.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.105 3.895 10 C -0.244 4.244 11 C -0.115 4.115 12 C -0.247 4.247 13 C -0.055 4.055 14 C -0.036 4.036 15 C -0.242 4.242 16 C 0.024 3.976 17 O -0.303 6.303 18 C -0.015 4.015 19 C -0.153 4.153 20 C -0.161 4.161 21 H 0.092 0.908 22 H 0.110 0.890 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.133 0.867 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.820 -3.530 5.123 7.870 hybrid contribution 0.716 0.605 -0.230 0.965 sum -4.104 -2.926 4.893 7.024 Atomic orbital electron populations 1.69812 1.07520 1.29347 1.35160 1.25897 0.94730 1.01262 0.92299 0.86385 0.80156 0.80329 0.79961 1.19011 1.20316 1.18839 1.19527 0.97928 0.91160 1.40905 0.90466 1.17560 0.91117 0.92127 0.88702 1.21033 1.03654 0.92958 1.06723 1.20437 0.96194 0.96493 0.98331 1.20318 1.01642 0.95102 1.07609 1.18641 0.94393 0.94180 0.98280 1.19882 0.93852 0.96300 0.93541 1.22977 0.99859 1.05650 0.95684 1.21330 0.82057 1.01481 0.92772 1.88052 1.35104 1.50003 1.57135 1.22643 0.99750 0.89011 0.90140 1.21081 0.93323 1.02487 0.98434 1.21465 0.98500 0.95795 1.00324 0.90783 0.89041 0.89347 0.89557 0.86661 0.88578 0.92851 0.88937 0.93126 0.89795 0.90026 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.81 10.97 55.55 0.61 -20.20 16 2 C 0.08 1.93 5.14 -17.35 -0.09 1.84 16 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.47 -12.47 9.05 -37.74 -0.34 -12.81 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.11 2.89 5.57 -106.87 -0.59 2.30 16 10 C -0.22 -5.58 9.78 -38.81 -0.38 -5.96 16 11 C -0.10 -2.19 10.01 -39.72 -0.40 -2.59 16 12 C -0.23 -5.12 9.68 -38.91 -0.38 -5.50 16 13 C -0.05 -1.28 5.18 -105.09 -0.54 -1.83 16 14 C -0.04 -0.72 5.31 -102.70 -0.54 -1.26 16 15 C -0.22 -4.10 9.55 -36.39 -0.35 -4.45 16 16 C 0.10 1.51 7.04 35.79 0.25 1.77 16 17 O -0.38 -6.29 10.84 -35.23 -0.38 -6.67 16 18 C 0.06 0.88 6.88 37.22 0.26 1.13 16 19 C -0.12 -1.98 6.07 -27.96 -0.17 -2.15 16 20 C -0.14 -3.71 8.32 -38.47 -0.32 -4.03 16 21 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 22 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 23 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 24 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 25 H 0.12 2.17 7.99 -52.49 -0.42 1.75 16 26 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 32 H 0.12 3.30 6.18 -52.48 -0.32 2.98 16 LS Contribution 273.55 15.07 4.12 4.12 Total: -1.00 -28.29 273.55 -8.37 -36.66 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.09 Total: 5.81 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: -3.60 Total: -33.55 kcal Atomic # 7 Polarization: -20.81 SS G_CDS: 0.61 Total: -20.20 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.38 Total: -6.67 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.29 -8.37 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242076223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.552 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds