Wall clock time and date at job start Sun Mar 29 2020 22:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47170 * 239.99152 * 3 2 1 5 5 H 1.48498 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47297 * 119.99864 * 3 2 1 7 7 C 1.39924 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00615 * 162.67055 * 7 2 1 9 9 C 1.41431 * 119.99929 * 342.67683 * 7 2 1 10 10 C 1.40803 * 120.18074 * 155.12488 * 9 7 2 11 11 C 1.37698 * 120.03424 * 180.24895 * 10 9 7 12 12 C 1.38387 * 120.40065 * 359.49787 * 11 10 9 13 13 C 1.39880 * 120.35846 * 0.24991 * 12 11 10 14 14 C 1.47838 * 120.02083 * 180.02562 * 13 12 11 15 15 C 1.31622 * 118.84554 * 114.73516 * 14 13 12 16 16 C 1.50255 * 122.64293 * 180.11073 * 15 14 13 17 17 O 1.42893 * 110.16138 * 344.85202 * 16 15 14 18 18 C 1.43287 * 113.08005 * 50.23616 * 17 16 15 19 19 C 1.50408 * 118.84895 * 295.00196 * 14 13 12 20 20 C 1.38966 * 119.95645 * 0.02562 * 13 12 11 21 21 H 0.96998 * 119.99589 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.98330 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.80258 * 179.77075 * 11 10 9 24 24 H 1.08004 * 119.82373 * 180.27342 * 12 11 10 25 25 H 1.07998 * 118.67979 * 0.38405 * 15 14 13 26 26 H 1.08998 * 109.51202 * 224.53054 * 16 15 14 27 27 H 1.09004 * 109.06266 * 104.88785 * 16 15 14 28 28 H 1.09005 * 109.63748 * 171.62473 * 18 17 16 29 29 H 1.08998 * 109.64126 * 50.99517 * 18 17 16 30 30 H 1.09003 * 109.45565 * 283.38534 * 19 14 13 31 31 H 1.08996 * 109.45478 * 43.34462 * 19 14 13 32 32 H 1.08003 * 120.19963 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0512 -1.2332 -0.2780 9 6 1.3490 -2.4086 0.3658 10 6 1.8217 -3.6488 -0.1043 11 6 1.1748 -4.8119 0.2490 12 6 0.0647 -4.7727 1.0745 13 6 -0.4160 -3.5503 1.5553 14 6 -1.6021 -3.5172 2.4371 15 6 -1.4583 -3.1079 3.6798 16 6 -2.6043 -3.0425 4.6494 17 8 -3.8470 -3.1341 3.9499 18 6 -3.8980 -4.2376 3.0375 19 6 -2.9297 -3.9581 1.8846 20 6 0.2221 -2.3670 1.2035 21 1 -0.4849 0.8401 -0.0004 22 1 2.6901 -3.6876 -0.7452 23 1 1.5384 -5.7608 -0.1167 24 1 -0.4330 -5.6910 1.3493 25 1 -0.4780 -2.8027 4.0148 26 1 -2.5656 -2.1002 5.1957 27 1 -2.5234 -3.8715 5.3525 28 1 -4.9105 -4.3443 2.6479 29 1 -3.6016 -5.1520 3.5514 30 1 -3.3382 -3.1716 1.2500 31 1 -2.7947 -4.8658 1.2964 32 1 -0.1460 -1.4209 1.5721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242076223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:22 Heat of formation + Delta-G solvation = -40.136566 kcal Electronic energy + Delta-G solvation = -15394.274580 eV Core-core repulsion = 12897.410605 eV Total energy + Delta-G solvation = -2496.863974 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47622 -39.12571 -35.89621 -34.87385 -32.02625 -31.52778 -30.70343 -27.20986 -26.05581 -24.68347 -22.78003 -22.18049 -19.46357 -18.76245 -17.57596 -17.14027 -16.71348 -16.48501 -15.97446 -15.34727 -15.20875 -14.52536 -14.37345 -13.99851 -13.81635 -13.41559 -13.25618 -12.95035 -12.81045 -12.54334 -12.37025 -12.14105 -11.80738 -11.52931 -11.31739 -11.06635 -10.52113 -9.91199 -9.35433 -9.08756 -8.65014 -6.38299 0.72949 1.04266 1.34489 1.34944 1.46808 1.53157 2.18171 2.69522 2.96777 3.65009 3.87810 3.95929 4.08930 4.35278 4.40255 4.48411 4.55560 4.63500 4.68616 4.78564 4.81558 4.99728 5.02418 5.11558 5.26095 5.41517 5.51244 5.69559 5.91758 5.96723 6.07465 6.14564 6.20816 6.35740 6.65983 6.91235 6.99594 8.31145 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.008050 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.917302 B = 3477.529257 C = 4225.010696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.075 3.925 10 C -0.245 4.245 11 C -0.095 4.095 12 C -0.227 4.227 13 C -0.053 4.053 14 C -0.070 4.070 15 C -0.210 4.210 16 C 0.100 3.900 17 O -0.399 6.399 18 C 0.065 3.935 19 C -0.113 4.113 20 C -0.171 4.171 21 H 0.287 0.713 22 H 0.097 0.903 23 H 0.124 0.876 24 H 0.117 0.883 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 -4.650 6.067 9.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.073 3.927 10 C -0.264 4.264 11 C -0.113 4.113 12 C -0.246 4.246 13 C -0.053 4.053 14 C -0.070 4.070 15 C -0.229 4.229 16 C 0.025 3.975 17 O -0.318 6.318 18 C -0.012 4.012 19 C -0.150 4.150 20 C -0.191 4.191 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.142 0.858 24 H 0.135 0.865 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.624 -4.370 6.074 9.361 hybrid contribution 0.952 0.733 -0.488 1.297 sum -4.672 -3.636 5.586 8.140 Atomic orbital electron populations 1.69887 1.09017 1.30505 1.35802 1.26767 0.95488 1.04551 0.91240 0.85273 0.78805 0.75640 0.80136 1.18162 1.19190 1.18487 1.19798 0.98177 0.92465 1.42916 0.90624 1.17959 0.91986 0.93276 0.89482 1.21252 1.04443 0.93266 1.07466 1.20839 0.95699 0.97223 0.97497 1.20744 1.01326 0.95910 1.06625 1.19030 0.94969 0.93592 0.97757 1.20027 0.94118 0.98984 0.93846 1.23248 1.00706 1.02984 0.95928 1.21490 0.80346 1.03603 0.92106 1.88043 1.35202 1.51068 1.57502 1.22799 1.00427 0.89061 0.88877 1.21090 0.92263 1.02146 0.99489 1.21363 0.99691 0.96065 1.01946 0.90263 0.88433 0.85781 0.86508 0.88017 0.87001 0.89824 0.86211 0.91140 0.91552 0.89092 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.96 10.97 21.82 0.24 -44.73 16 2 C 0.03 1.78 5.14 85.25 0.44 2.22 16 3 Si 0.98 39.37 29.59 68.60 2.03 41.40 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.50 -28.14 9.05 23.46 0.21 -27.92 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 9 C 0.08 4.21 5.57 -21.32 -0.12 4.10 16 10 C -0.24 -12.39 9.78 22.77 0.22 -12.17 16 11 C -0.09 -4.20 10.01 22.18 0.22 -3.98 16 12 C -0.23 -9.94 9.68 22.70 0.22 -9.72 16 13 C -0.05 -2.52 5.18 -20.16 -0.10 -2.62 16 14 C -0.07 -2.76 5.31 -18.04 -0.10 -2.85 16 15 C -0.21 -7.53 9.55 24.92 0.24 -7.29 16 16 C 0.10 2.78 7.04 71.10 0.50 3.28 16 17 O -0.40 -11.95 10.84 -148.98 -1.61 -13.56 16 18 C 0.06 1.64 6.88 72.02 0.50 2.14 16 19 C -0.11 -3.68 6.07 29.80 0.18 -3.50 16 20 C -0.17 -9.35 8.32 22.99 0.19 -9.16 16 21 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 22 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 23 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 24 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 25 H 0.10 3.85 7.99 -2.91 -0.02 3.83 16 26 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 2.73 8.06 -2.39 -0.02 2.71 16 32 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 Total: -1.00 -62.95 273.55 4.36 -58.59 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 1.10 Total: 25.78 kcal Atomic # 6 Polarization: -70.09 SS G_CDS: 2.60 Total: -67.49 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.24 Total: -44.73 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.61 Total: -13.56 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -62.95 4.36 -58.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242076223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.457 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds