Wall clock time and date at job start Sun Mar 29 2020 22:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35069 * 125.92600 * 2 1 4 4 C 1.35049 * 107.99906 * 179.69851 * 3 2 1 5 5 C 1.40905 * 107.85328 * 0.26220 * 4 3 2 6 6 C 1.48280 * 126.04741 * 179.97438 * 5 4 3 7 7 C 1.40062 * 119.98663 * 180.02562 * 6 5 4 8 8 N 1.32156 * 120.29439 * 179.97438 * 7 6 5 9 9 C 1.31900 * 120.28739 * 0.02699 * 8 7 6 10 10 C 1.40805 * 119.96645 * 359.97438 * 9 8 7 11 11 C 1.41328 * 120.14337 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99965 * 353.81989 * 11 10 9 13 13 C 1.40046 * 119.99836 * 173.82314 * 11 10 9 14 14 N 1.30731 * 120.00148 * 6.32917 * 13 11 10 15 15 Si 1.86804 * 119.99789 * 186.33225 * 13 11 10 16 16 H 1.48504 * 109.47110 * 60.00220 * 15 13 11 17 17 H 1.48500 * 109.46752 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47092 * 299.99849 * 15 13 11 19 19 N 1.32517 * 119.98628 * 359.72518 * 6 5 4 20 20 N 1.31701 * 107.90380 * 359.97438 * 5 4 3 21 21 H 1.09004 * 109.46863 * 90.00167 * 1 2 3 22 22 H 1.09001 * 109.47059 * 209.99881 * 1 2 3 23 23 H 1.08997 * 109.47135 * 330.00122 * 1 2 3 24 24 H 1.08001 * 126.00517 * 359.95857 * 3 2 1 25 25 H 1.08003 * 126.07272 * 180.22804 * 4 3 2 26 26 H 1.08003 * 119.85358 * 359.97438 * 7 6 5 27 27 H 1.08004 * 120.01293 * 179.97438 * 9 8 7 28 28 H 0.96997 * 119.99813 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2575 1.0938 0.0000 4 6 3.5424 0.6781 0.0068 5 6 3.5406 -0.7310 0.0050 6 6 4.7384 -1.6051 0.0101 7 6 4.5888 -2.9977 0.0070 8 7 5.6521 -3.7824 0.0111 9 6 6.8636 -3.2610 0.0186 10 6 7.0275 -1.8626 0.0218 11 6 8.3239 -1.2999 0.0293 12 1 9.1889 -1.9380 0.1333 13 6 8.4868 0.0852 -0.0980 14 7 7.4405 0.8691 -0.0994 15 14 10.1991 0.8127 -0.2661 16 1 10.8543 0.2614 -1.4794 17 1 10.0999 2.2896 -0.3855 18 1 11.0043 0.4655 0.9324 19 7 5.9500 -1.0683 0.0116 20 7 2.2869 -1.1342 -0.0021 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.9225 2.1205 -0.0006 25 1 4.4162 1.3129 0.0120 26 1 3.6000 -3.4321 0.0013 27 1 7.7295 -3.9065 0.0223 28 1 7.5534 1.8284 -0.1872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242458061.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:50 Heat of formation + Delta-G solvation = 99.204440 kcal Electronic energy + Delta-G solvation = -14986.902482 eV Core-core repulsion = 12424.833195 eV Total energy + Delta-G solvation = -2562.069287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.99949 -40.64925 -35.94526 -34.86815 -33.54831 -32.02469 -30.96947 -28.11405 -27.38347 -24.73491 -23.96037 -21.73141 -21.06005 -19.30390 -18.16224 -17.30481 -17.08031 -16.71583 -16.32194 -15.76202 -14.96732 -14.71362 -14.45672 -13.82224 -13.49246 -13.38709 -13.27915 -13.09660 -12.94903 -12.53869 -12.02716 -11.72149 -11.67964 -11.51205 -11.23770 -10.36485 -9.71504 -9.38676 -9.19253 -8.37337 -6.65144 0.13821 0.96425 1.19460 1.45005 1.57126 1.58625 1.68346 2.06722 2.22526 2.84812 3.39219 3.81680 3.91563 4.06429 4.19247 4.37319 4.50450 4.54560 4.72382 4.77349 4.91463 5.00690 5.13249 5.21896 5.26126 5.61928 5.74065 6.10708 6.25105 6.47483 6.67302 6.76359 7.25604 7.84388 8.33734 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.030828 B = 0.007914 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.042852 B = 3537.060629 C = 4427.726912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.374 5.374 3 C 0.063 3.937 4 C -0.256 4.256 5 C 0.105 3.895 6 C 0.160 3.840 7 C -0.109 4.109 8 N -0.440 5.440 9 C -0.074 4.074 10 C 0.175 3.825 11 C -0.432 4.432 12 H 0.108 0.892 13 C 0.021 3.979 14 N -0.738 5.738 15 Si 0.997 3.003 16 H -0.258 1.258 17 H -0.268 1.268 18 H -0.255 1.255 19 N -0.459 5.459 20 N -0.313 5.313 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.125 0.875 24 H 0.226 0.774 25 H 0.140 0.860 26 H 0.141 0.859 27 H 0.157 0.843 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 6.839 -0.115 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.158 5.158 3 C -0.083 4.083 4 C -0.286 4.286 5 C -0.058 4.058 6 C 0.011 3.989 7 C -0.268 4.268 8 N -0.151 5.151 9 C -0.244 4.244 10 C 0.048 3.952 11 C -0.464 4.464 12 H 0.126 0.874 13 C -0.203 4.203 14 N -0.358 5.358 15 Si 0.816 3.184 16 H -0.182 1.182 17 H -0.192 1.192 18 H -0.179 1.179 19 N -0.178 5.178 20 N -0.140 5.140 21 H 0.107 0.893 22 H 0.106 0.894 23 H 0.143 0.857 24 H 0.243 0.757 25 H 0.158 0.842 26 H 0.159 0.841 27 H 0.175 0.825 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.936 6.086 -0.134 10.812 hybrid contribution 1.135 0.686 -0.073 1.328 sum -7.801 6.771 -0.207 10.332 Atomic orbital electron populations 1.22275 0.71182 1.06249 1.04830 1.48949 1.08075 1.02910 1.55818 1.23038 0.89472 0.94938 1.00818 1.21707 0.98398 0.93592 1.14894 1.20368 0.90233 0.93841 1.01349 1.20010 0.91779 0.90949 0.96140 1.22726 0.97195 0.90797 1.16081 1.67699 0.99553 1.40072 1.07814 1.23567 0.94679 0.94483 1.11706 1.19862 0.93867 0.89963 0.91462 1.20092 0.91753 0.93816 1.40704 0.87393 1.27133 1.03354 0.97185 0.92645 1.70168 1.33302 1.05817 1.26520 0.85039 0.75788 0.77382 0.80220 1.18244 1.19178 1.17915 1.69439 0.96048 1.36220 1.16126 1.77408 1.00861 1.09270 1.26438 0.89320 0.89378 0.85711 0.75717 0.84168 0.84116 0.82535 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 11.46 127.77 1.46 3.01 15 2 N -0.37 -11.32 4.01 -369.68 -1.48 -12.81 15 3 C 0.06 1.84 11.46 83.46 0.96 2.80 15 4 C -0.26 -10.60 10.54 22.19 0.23 -10.37 15 5 C 0.11 5.03 7.02 42.49 0.30 5.32 15 6 C 0.16 8.74 6.76 42.16 0.29 9.03 15 7 C -0.11 -5.80 10.88 85.09 0.93 -4.87 15 8 N -0.44 -23.68 10.47 -192.04 -2.01 -25.69 15 9 C -0.07 -3.92 10.97 85.31 0.94 -2.98 15 10 C 0.17 9.86 6.54 40.22 0.26 10.13 15 11 C -0.43 -22.50 9.15 23.47 0.21 -22.28 15 12 H 0.11 5.04 7.85 -2.91 -0.02 5.02 15 13 C 0.02 1.01 5.49 85.30 0.47 1.48 15 14 N -0.74 -37.79 11.51 21.84 0.25 -37.53 15 15 Si 1.00 35.61 29.56 68.60 2.03 37.64 15 16 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 17 H -0.27 -9.08 7.11 99.48 0.71 -8.38 15 18 H -0.26 -8.74 7.11 99.48 0.71 -8.04 15 19 N -0.46 -26.49 7.80 -177.65 -1.39 -27.87 15 20 N -0.31 -13.15 12.23 -48.18 -0.59 -13.74 15 21 H 0.09 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.12 1.08 8.14 -2.39 -0.02 1.06 15 24 H 0.23 3.82 8.06 -2.91 -0.02 3.80 15 25 H 0.14 6.26 8.06 -2.91 -0.02 6.23 15 26 H 0.14 7.02 7.84 -2.91 -0.02 7.00 15 27 H 0.16 7.30 8.06 -2.91 -0.02 7.27 15 28 H 0.29 13.08 8.29 -92.71 -0.77 12.31 15 Total: -1.00 -72.16 259.79 4.04 -68.13 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 1.18 Total: 20.61 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 6.05 Total: -8.74 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.22 Total: -117.64 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -72.16 4.04 -68.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242458061.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.332 kcal (2) G-P(sol) polarization free energy of solvation -72.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds