Wall clock time and date at job start Sun Mar 29 2020 21:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33830 * 126.92729 * 2 1 4 4 N 1.20813 * 111.96612 * 180.28014 * 3 2 1 5 5 C 1.29913 * 112.12224 * 359.74708 * 4 3 2 6 6 C 1.37216 * 126.92096 * 179.84859 * 2 1 3 7 7 C 1.47695 * 128.23222 * 0.02562 * 6 2 1 8 8 N 1.32642 * 120.00026 * 353.29541 * 7 6 2 9 9 C 1.31759 * 121.70735 * 180.02562 * 8 7 6 10 10 C 1.38847 * 121.50993 * 359.97438 * 9 8 7 11 11 C 1.36889 * 119.81795 * 359.69674 * 10 9 8 12 12 C 1.41091 * 118.40811 * 0.56460 * 11 10 9 13 13 C 1.40858 * 120.72402 * 179.72874 * 12 11 10 14 14 H 1.08006 * 119.99671 * 136.59490 * 13 12 11 15 15 C 1.40013 * 120.00018 * 316.59744 * 13 12 11 16 16 N 1.30812 * 120.00104 * 348.81518 * 15 13 12 17 17 Si 1.86799 * 119.99717 * 168.81615 * 15 13 12 18 18 H 1.48494 * 109.47223 * 269.99829 * 17 15 13 19 19 H 1.48502 * 109.47280 * 30.00406 * 17 15 13 20 20 H 1.48511 * 109.47049 * 149.99950 * 17 15 13 21 21 H 1.08995 * 109.46889 * 270.15314 * 1 2 3 22 22 H 1.08996 * 109.46571 * 30.15114 * 1 2 3 23 23 H 1.08994 * 109.47099 * 150.14888 * 1 2 3 24 24 H 1.08001 * 126.88722 * 180.02562 * 5 4 3 25 25 H 1.08004 * 119.24519 * 179.97438 * 9 8 7 26 26 H 1.08009 * 120.08541 * 180.02562 * 10 9 8 27 27 H 1.08006 * 120.79714 * 180.29672 * 11 10 9 28 28 H 0.96999 * 120.00004 * 354.05242 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3112 1.0698 0.0000 4 7 3.4783 0.7579 -0.0055 5 6 3.6403 -0.5310 -0.0046 6 6 2.3314 -1.0970 0.0029 7 6 1.9529 -2.5246 0.0062 8 7 0.6802 -2.8731 0.1406 9 6 0.3051 -4.1361 0.1486 10 6 1.2254 -5.1673 0.0158 11 6 2.5550 -4.8779 -0.1336 12 6 2.9511 -3.5238 -0.1356 13 6 4.3071 -3.1709 -0.2802 14 1 4.5867 -2.3575 -0.9335 15 6 5.2925 -3.8745 0.4228 16 7 4.9502 -4.7063 1.3727 17 14 7.0959 -3.6256 0.0043 18 1 7.4999 -4.5981 -1.0425 19 1 7.3012 -2.2434 -0.4983 20 1 7.9203 -3.8373 1.2213 21 1 -0.3633 0.0027 1.0276 22 1 -0.3632 0.8886 -0.5162 23 1 -0.3633 -0.8913 -0.5115 24 1 4.5782 -1.0666 -0.0082 25 1 -0.7422 -4.3748 0.2610 26 1 0.8924 -6.1947 0.0250 27 1 3.2838 -5.6674 -0.2430 28 1 4.0227 -4.7719 1.6489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242599707.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:07 Heat of formation + Delta-G solvation = 78.314847 kcal Electronic energy + Delta-G solvation = -15533.259137 eV Core-core repulsion = 12937.991258 eV Total energy + Delta-G solvation = -2595.267879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.06565 -38.77395 -34.54886 -33.72226 -32.39833 -30.68493 -29.87480 -26.98833 -25.87386 -23.33965 -21.92516 -21.29599 -19.76754 -18.06944 -16.87473 -16.55447 -15.54086 -14.97316 -14.47393 -14.19086 -13.67509 -13.26075 -12.75499 -12.72377 -12.46812 -11.87844 -11.78524 -11.64010 -11.27749 -11.03738 -10.52661 -10.50099 -9.86146 -9.66170 -9.39709 -8.96099 -8.46211 -8.36866 -7.55423 -7.20557 -4.74179 1.75836 2.47114 2.53509 3.07294 3.12950 3.24351 3.38294 3.82756 3.88604 4.49646 5.12359 5.24911 5.36218 5.39260 5.75034 5.91398 5.97469 6.08427 6.18613 6.31492 6.35616 6.58173 6.62503 6.85123 6.90042 7.26635 7.40041 7.48333 7.70980 7.82617 8.29448 8.57569 9.02608 9.19923 9.94468 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.012457 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.107849 B = 2247.277739 C = 3430.306058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.054 4.054 3 O 0.079 5.921 4 N -0.390 5.390 5 C 0.007 3.993 6 C -0.101 4.101 7 C 0.071 3.929 8 N -0.453 5.453 9 C -0.018 4.018 10 C -0.140 4.140 11 C -0.157 4.157 12 C 0.071 3.929 13 C -0.522 4.522 14 H 0.091 0.909 15 C 0.035 3.965 16 N -0.807 5.807 17 Si 1.068 2.932 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.274 1.274 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.211 0.789 25 H 0.129 0.871 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 2.437 -1.977 4.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 O 0.017 5.983 4 N -0.098 5.098 5 C -0.172 4.172 6 C -0.106 4.106 7 C -0.067 4.067 8 N -0.162 5.162 9 C -0.178 4.178 10 C -0.161 4.161 11 C -0.182 4.182 12 C 0.067 3.933 13 C -0.552 4.552 14 H 0.108 0.892 15 C -0.185 4.185 16 N -0.431 5.431 17 Si 0.891 3.109 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.198 1.198 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.119 0.881 24 H 0.227 0.773 25 H 0.146 0.854 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.806 3.558 -1.481 4.256 hybrid contribution -1.238 -1.245 -0.383 1.797 sum -3.044 2.313 -1.865 4.254 Atomic orbital electron populations 1.20199 0.84145 1.03669 1.03206 1.24568 0.95850 0.85547 1.05898 1.84556 1.11660 1.33340 1.68706 1.73624 0.96963 1.17842 1.21361 1.26032 1.01359 0.88802 1.00975 1.19393 0.91587 0.92738 1.06887 1.18699 0.89022 0.89446 1.09524 1.66978 1.18530 1.20450 1.10196 1.21786 0.98330 0.87787 1.09898 1.21457 0.94636 0.99009 1.00970 1.21370 0.94942 0.96675 1.05262 1.18378 0.94290 0.91091 0.89575 1.20562 0.91199 1.18053 1.25350 0.89173 1.27043 1.07347 0.91106 0.92980 1.70419 1.24184 1.27173 1.21336 0.83564 0.72361 0.77576 0.77379 1.19861 1.19792 1.19845 0.90563 0.91687 0.88067 0.77286 0.85352 0.87631 0.86804 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.86 9.88 36.01 0.36 -0.50 15 2 C -0.05 -1.07 7.56 -34.67 -0.26 -1.33 15 3 O 0.08 1.58 11.16 17.75 0.20 1.78 15 4 N -0.39 -8.36 12.02 30.69 0.37 -7.99 15 5 C 0.01 0.15 10.48 -16.68 -0.17 -0.02 15 6 C -0.10 -2.31 6.18 -104.72 -0.65 -2.95 15 7 C 0.07 1.71 6.82 -82.24 -0.56 1.15 15 8 N -0.45 -10.14 8.24 -9.18 -0.08 -10.22 15 9 C -0.02 -0.36 11.16 -17.36 -0.19 -0.56 15 10 C -0.14 -2.90 10.03 -39.84 -0.40 -3.30 15 11 C -0.16 -3.65 7.89 -38.99 -0.31 -3.96 15 12 C 0.07 1.77 5.03 -106.41 -0.54 1.23 15 13 C -0.52 -12.71 6.59 -37.93 -0.25 -12.96 15 14 H 0.09 2.13 5.55 -52.48 -0.29 1.84 15 15 C 0.04 0.84 5.23 -17.32 -0.09 0.75 15 16 N -0.81 -20.47 12.88 55.55 0.72 -19.75 15 17 Si 1.07 20.53 29.95 -169.99 -5.09 15.44 15 18 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 19 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 21 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 23 H 0.10 1.69 6.70 -51.93 -0.35 1.34 15 24 H 0.21 4.62 5.11 -52.49 -0.27 4.35 15 25 H 0.13 2.21 8.06 -52.48 -0.42 1.79 15 26 H 0.11 1.84 8.06 -52.48 -0.42 1.42 15 27 H 0.11 2.67 7.47 -52.48 -0.39 2.28 15 28 H 0.30 7.71 6.41 -40.82 -0.26 7.45 15 LS Contribution 246.06 15.07 3.71 3.71 Total: -1.00 -26.76 246.06 -5.29 -32.05 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.05 Total: 7.45 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -3.07 Total: -22.46 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 1.01 Total: -37.96 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.20 Total: 1.78 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.09 Total: 15.44 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.76 -5.29 -32.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242599707.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.362 kcal (2) G-P(sol) polarization free energy of solvation -26.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds