Wall clock time and date at job start Sun Mar 29 2020 21:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33830 * 126.92729 * 2 1 4 4 N 1.20813 * 111.96612 * 180.28014 * 3 2 1 5 5 C 1.29913 * 112.12224 * 359.74708 * 4 3 2 6 6 C 1.37216 * 126.92096 * 179.84859 * 2 1 3 7 7 C 1.47695 * 128.23222 * 0.02562 * 6 2 1 8 8 N 1.32642 * 120.00026 * 353.29541 * 7 6 2 9 9 C 1.31759 * 121.70735 * 180.02562 * 8 7 6 10 10 C 1.38847 * 121.50993 * 359.97438 * 9 8 7 11 11 C 1.36889 * 119.81795 * 359.69674 * 10 9 8 12 12 C 1.41091 * 118.40811 * 0.56460 * 11 10 9 13 13 C 1.40858 * 120.72402 * 179.72874 * 12 11 10 14 14 H 1.08006 * 119.99671 * 136.59490 * 13 12 11 15 15 C 1.40013 * 120.00018 * 316.59744 * 13 12 11 16 16 N 1.30812 * 120.00104 * 348.81518 * 15 13 12 17 17 Si 1.86799 * 119.99717 * 168.81615 * 15 13 12 18 18 H 1.48494 * 109.47223 * 269.99829 * 17 15 13 19 19 H 1.48502 * 109.47280 * 30.00406 * 17 15 13 20 20 H 1.48511 * 109.47049 * 149.99950 * 17 15 13 21 21 H 1.08995 * 109.46889 * 270.15314 * 1 2 3 22 22 H 1.08996 * 109.46571 * 30.15114 * 1 2 3 23 23 H 1.08994 * 109.47099 * 150.14888 * 1 2 3 24 24 H 1.08001 * 126.88722 * 180.02562 * 5 4 3 25 25 H 1.08004 * 119.24519 * 179.97438 * 9 8 7 26 26 H 1.08009 * 120.08541 * 180.02562 * 10 9 8 27 27 H 1.08006 * 120.79714 * 180.29672 * 11 10 9 28 28 H 0.96999 * 120.00004 * 354.05242 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3112 1.0698 0.0000 4 7 3.4783 0.7579 -0.0055 5 6 3.6403 -0.5310 -0.0046 6 6 2.3314 -1.0970 0.0029 7 6 1.9529 -2.5246 0.0062 8 7 0.6802 -2.8731 0.1406 9 6 0.3051 -4.1361 0.1486 10 6 1.2254 -5.1673 0.0158 11 6 2.5550 -4.8779 -0.1336 12 6 2.9511 -3.5238 -0.1356 13 6 4.3071 -3.1709 -0.2802 14 1 4.5867 -2.3575 -0.9335 15 6 5.2925 -3.8745 0.4228 16 7 4.9502 -4.7063 1.3727 17 14 7.0959 -3.6256 0.0043 18 1 7.4999 -4.5981 -1.0425 19 1 7.3012 -2.2434 -0.4983 20 1 7.9203 -3.8373 1.2213 21 1 -0.3633 0.0027 1.0276 22 1 -0.3632 0.8886 -0.5162 23 1 -0.3633 -0.8913 -0.5115 24 1 4.5782 -1.0666 -0.0082 25 1 -0.7422 -4.3748 0.2610 26 1 0.8924 -6.1947 0.0250 27 1 3.2838 -5.6674 -0.2430 28 1 4.0227 -4.7719 1.6489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242599707.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:07 Heat of formation + Delta-G solvation = 63.734407 kcal Electronic energy + Delta-G solvation = -15533.891393 eV Core-core repulsion = 12937.991258 eV Total energy + Delta-G solvation = -2595.900134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.74472 -40.50711 -36.30862 -35.38088 -33.99809 -32.42020 -31.57132 -28.46987 -27.65041 -25.05070 -23.66162 -22.99393 -21.45405 -19.82432 -18.54448 -18.20721 -17.18175 -16.70709 -16.18448 -15.82378 -15.30914 -14.95797 -14.32628 -14.19906 -13.89509 -13.57736 -13.39846 -13.22528 -12.89511 -12.62662 -12.12316 -12.01375 -11.56551 -11.38463 -11.12265 -10.60504 -10.21744 -10.10694 -9.34737 -8.96925 -6.58940 0.08015 0.75603 0.80785 1.49689 1.59490 1.65668 1.74832 2.25980 2.29807 2.73203 3.41234 3.50165 3.70839 3.89458 4.15243 4.31483 4.54504 4.61290 4.67322 4.77481 4.82961 4.95517 5.08685 5.14943 5.33954 5.51299 5.62252 5.69656 5.88973 6.06169 6.51619 6.78982 7.36594 7.45914 8.08921 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.012457 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.107849 B = 2247.277739 C = 3430.306058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.032 4.032 3 O 0.090 5.910 4 N -0.397 5.397 5 C -0.004 4.004 6 C -0.142 4.142 7 C 0.057 3.943 8 N -0.458 5.458 9 C -0.009 4.009 10 C -0.138 4.138 11 C -0.171 4.171 12 C 0.041 3.959 13 C -0.543 4.543 14 H 0.087 0.913 15 C 0.004 3.996 16 N -0.836 5.836 17 Si 1.111 2.889 18 H -0.261 1.261 19 H -0.260 1.260 20 H -0.275 1.275 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.205 0.795 25 H 0.171 0.829 26 H 0.142 0.858 27 H 0.102 0.898 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 2.932 -2.302 6.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 O 0.028 5.972 4 N -0.104 5.104 5 C -0.182 4.182 6 C -0.146 4.146 7 C -0.080 4.080 8 N -0.166 5.166 9 C -0.170 4.170 10 C -0.158 4.158 11 C -0.197 4.197 12 C 0.037 3.963 13 C -0.573 4.573 14 H 0.105 0.895 15 C -0.209 4.209 16 N -0.462 5.462 17 Si 0.929 3.071 18 H -0.186 1.186 19 H -0.184 1.184 20 H -0.200 1.200 21 H 0.111 0.889 22 H 0.120 0.880 23 H 0.112 0.888 24 H 0.221 0.779 25 H 0.188 0.812 26 H 0.160 0.840 27 H 0.120 0.880 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.363 4.068 -1.818 5.583 hybrid contribution -1.005 -1.366 -0.298 1.722 sum -4.369 2.702 -2.116 5.555 Atomic orbital electron populations 1.20396 0.80877 1.05079 1.04647 1.25256 0.97396 0.84406 1.02636 1.84548 1.11342 1.33291 1.68029 1.73597 0.97645 1.17329 1.21823 1.25995 1.01490 0.89156 1.01572 1.19561 0.92378 0.93168 1.09529 1.18946 0.89563 0.90043 1.09457 1.67083 1.17575 1.21380 1.10574 1.22575 1.00269 0.87123 1.07000 1.21837 0.93447 1.01144 0.99375 1.21434 0.96160 0.96021 1.06053 1.18707 0.94971 0.92077 0.90539 1.20635 0.91696 1.18745 1.26204 0.89500 1.28225 1.10585 0.90110 0.92014 1.70536 1.23016 1.29432 1.23172 0.83047 0.68228 0.78451 0.77378 1.18573 1.18371 1.19984 0.88870 0.88046 0.88789 0.77907 0.81161 0.84021 0.87981 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.48 9.88 71.24 0.70 -0.78 15 2 C -0.03 -1.21 7.56 25.45 0.19 -1.01 15 3 O 0.09 3.46 11.16 73.73 0.82 4.29 15 4 N -0.40 -16.79 12.02 -57.87 -0.70 -17.49 15 5 C 0.00 -0.19 10.48 86.07 0.90 0.71 15 6 C -0.14 -6.40 6.18 -19.93 -0.12 -6.53 15 7 C 0.06 2.73 6.82 42.44 0.29 3.02 15 8 N -0.46 -19.66 8.24 -182.94 -1.51 -21.17 15 9 C -0.01 -0.35 11.16 84.85 0.95 0.60 15 10 C -0.14 -5.45 10.03 22.10 0.22 -5.23 15 11 C -0.17 -8.01 7.89 22.65 0.18 -7.83 15 12 C 0.04 2.09 5.03 -21.02 -0.11 1.98 15 13 C -0.54 -27.27 6.59 23.34 0.15 -27.11 15 14 H 0.09 4.28 5.55 -2.91 -0.02 4.26 15 15 C 0.00 0.21 5.23 85.28 0.45 0.66 15 16 N -0.84 -43.82 12.88 21.84 0.28 -43.54 15 17 Si 1.11 41.97 29.95 68.60 2.05 44.03 15 18 H -0.26 -9.27 7.11 99.48 0.71 -8.57 15 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 21 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.09 2.86 6.70 -2.39 -0.02 2.84 15 24 H 0.20 9.29 5.11 -2.91 -0.01 9.28 15 25 H 0.17 5.04 8.06 -2.91 -0.02 5.02 15 26 H 0.14 4.49 8.06 -2.91 -0.02 4.46 15 27 H 0.10 4.94 7.47 -2.91 -0.02 4.91 15 28 H 0.28 15.20 6.41 -92.71 -0.59 14.61 15 Total: -1.00 -58.29 246.06 6.13 -52.16 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.37 Total: 23.23 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 3.81 Total: -41.51 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.92 Total: -82.20 kcal Atomic # 8 Polarization: 3.46 SS G_CDS: 0.82 Total: 4.29 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.05 Total: 44.03 kcal Total: -58.29 6.13 -52.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242599707.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.892 kcal (2) G-P(sol) polarization free energy of solvation -58.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds