Wall clock time and date at job start Sun Mar 29 2020 21:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33898 * 126.91821 * 2 1 4 4 N 1.20826 * 111.92688 * 180.02562 * 3 2 1 5 5 C 1.29937 * 112.10098 * 359.71883 * 4 3 2 6 6 C 1.37138 * 126.91635 * 180.02562 * 2 1 3 7 7 C 1.47912 * 128.21677 * 359.95736 * 6 2 1 8 8 C 1.40313 * 120.34918 * 129.98176 * 7 6 2 9 9 C 1.36618 * 118.61025 * 179.74198 * 8 7 6 10 10 C 1.40912 * 119.25854 * 0.55752 * 9 8 7 11 11 C 1.40934 * 119.67625 * 179.70218 * 10 9 8 12 12 H 1.07999 * 120.00074 * 359.72725 * 11 10 9 13 13 C 1.40045 * 119.99933 * 179.72962 * 11 10 9 14 14 N 1.30752 * 120.00003 * 359.72510 * 13 11 10 15 15 Si 1.86795 * 119.99981 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47317 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47320 * 120.00329 * 15 13 11 18 18 H 1.48507 * 109.47345 * 239.99884 * 15 13 11 19 19 N 1.33794 * 120.64600 * 359.43082 * 10 9 8 20 20 C 1.31185 * 121.50624 * 0.26814 * 19 10 9 21 21 H 1.09001 * 109.47299 * 269.97611 * 1 2 3 22 22 H 1.08999 * 109.46871 * 29.97802 * 1 2 3 23 23 H 1.08999 * 109.47061 * 149.97462 * 1 2 3 24 24 H 1.08002 * 126.87913 * 180.27019 * 5 4 3 25 25 H 1.08003 * 120.69460 * 0.03659 * 8 7 6 26 26 H 1.07996 * 120.37220 * 180.28715 * 9 8 7 27 27 H 0.97000 * 120.00238 * 180.02562 * 14 13 11 28 28 H 1.07997 * 119.66592 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3113 1.0705 0.0000 4 7 3.4784 0.7580 -0.0005 5 6 3.6393 -0.5314 0.0050 6 6 2.3307 -1.0964 -0.0005 7 6 1.9512 -2.5260 -0.0003 8 6 2.5208 -3.4109 -0.9284 9 6 2.1487 -4.7249 -0.8930 10 6 1.2012 -5.1470 0.0609 11 6 0.8064 -6.4992 0.1012 12 1 1.2262 -7.2055 -0.5997 13 6 -0.1305 -6.9272 1.0501 14 7 -0.6349 -6.0732 1.9021 15 14 -0.6545 -8.7193 1.1030 16 1 0.0611 -9.4758 0.0442 17 1 -0.3228 -9.2930 2.4319 18 1 -2.1188 -8.8140 0.8746 19 7 0.6769 -4.2775 0.9322 20 6 1.0187 -3.0110 0.9269 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.5768 -1.0676 0.0099 25 1 3.2418 -3.0614 -1.6526 26 1 2.5726 -5.4315 -1.5910 27 1 -1.2835 -6.3696 2.5596 28 1 0.5771 -2.3351 1.6441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242602089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:12 Heat of formation + Delta-G solvation = 83.524639 kcal Electronic energy + Delta-G solvation = -14962.675882 eV Core-core repulsion = 12367.633917 eV Total energy + Delta-G solvation = -2595.041965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.29889 -38.26876 -34.44381 -33.24519 -32.64565 -30.74423 -29.86434 -27.37651 -25.86015 -22.85270 -22.02260 -21.21993 -19.91367 -17.63817 -17.08712 -16.64642 -15.67124 -14.85010 -14.37988 -14.17044 -13.59163 -13.05516 -12.85914 -12.67149 -12.21914 -12.09897 -11.98916 -11.34755 -11.14817 -10.98406 -10.83129 -10.60505 -10.12382 -9.90782 -9.50860 -8.84125 -8.34578 -7.71333 -7.49393 -6.57835 -4.67472 1.88093 2.40526 2.85789 2.98409 2.99922 3.04075 3.22512 3.62139 3.81136 4.56864 4.85376 5.13061 5.56142 5.66818 5.75578 5.88207 5.95337 5.95984 6.06357 6.19268 6.31488 6.60980 6.67984 6.73288 6.93848 7.24247 7.44090 7.61891 7.87826 8.05687 8.46841 8.75280 8.75867 9.94674 10.12136 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.055795 B = 0.006136 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.714726 B = 4562.221972 C = 4878.933609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.070 4.070 3 O 0.087 5.913 4 N -0.381 5.381 5 C -0.014 4.014 6 C -0.092 4.092 7 C -0.247 4.247 8 C -0.033 4.033 9 C -0.272 4.272 10 C 0.253 3.747 11 C -0.414 4.414 12 H 0.087 0.913 13 C 0.065 3.935 14 N -0.703 5.703 15 Si 0.910 3.090 16 H -0.259 1.259 17 H -0.271 1.271 18 H -0.271 1.271 19 N -0.487 5.487 20 C 0.157 3.843 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.183 0.817 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.276 0.724 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 4.320 -1.743 4.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.133 4.133 3 O 0.021 5.979 4 N -0.086 5.086 5 C -0.193 4.193 6 C -0.096 4.096 7 C -0.253 4.253 8 C -0.057 4.057 9 C -0.294 4.294 10 C 0.130 3.870 11 C -0.444 4.444 12 H 0.105 0.895 13 C -0.162 4.162 14 N -0.323 5.323 15 Si 0.734 3.266 16 H -0.182 1.182 17 H -0.196 1.196 18 H -0.196 1.196 19 N -0.198 5.198 20 C -0.011 4.011 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.110 0.890 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.043 4.986 -0.974 5.081 hybrid contribution 0.296 -1.228 -0.569 1.385 sum 0.339 3.759 -1.543 4.077 Atomic orbital electron populations 1.20185 0.84317 1.03886 1.03463 1.24566 0.95778 0.85629 1.07328 1.84591 1.11353 1.33436 1.68477 1.73564 0.97430 1.17390 1.20240 1.25105 1.00198 0.89943 1.04021 1.19902 0.90669 0.94670 1.04399 1.18135 1.11181 0.88899 1.07119 1.20531 0.96399 0.93126 0.95609 1.21399 1.06901 0.95483 1.05628 1.18650 0.87907 0.93335 0.87153 1.19751 1.18453 0.93223 1.12967 0.89471 1.26164 0.95555 0.99817 0.94676 1.70141 1.17274 1.34940 1.09957 0.86220 0.79197 0.81827 0.79374 1.18242 1.19639 1.19620 1.68823 1.26344 1.00489 1.24175 1.22671 0.91438 0.93373 0.93661 0.90113 0.90892 0.89031 0.79995 0.88704 0.88116 0.91298 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 9.97 36.01 0.36 -0.46 15 2 C -0.07 -1.19 7.54 -34.71 -0.26 -1.45 15 3 O 0.09 1.51 11.16 17.57 0.20 1.71 15 4 N -0.38 -6.93 12.02 30.68 0.37 -6.56 15 5 C -0.01 -0.26 12.20 -16.70 -0.20 -0.46 15 6 C -0.09 -1.75 5.77 -104.68 -0.60 -2.35 15 7 C -0.25 -5.31 5.71 -104.44 -0.60 -5.90 15 8 C -0.03 -0.72 9.85 -39.39 -0.39 -1.11 15 9 C -0.27 -6.36 9.76 -39.16 -0.38 -6.74 15 10 C 0.25 6.59 6.55 -84.98 -0.56 6.03 15 11 C -0.41 -10.50 9.11 -37.88 -0.35 -10.84 15 12 H 0.09 2.06 7.85 -52.49 -0.41 1.65 15 13 C 0.06 1.56 5.50 -17.33 -0.10 1.46 15 14 N -0.70 -17.75 11.44 55.55 0.64 -17.11 15 15 Si 0.91 17.54 29.56 -169.99 -5.02 12.51 15 16 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 17 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 18 H -0.27 -5.15 7.11 56.52 0.40 -4.74 15 19 N -0.49 -12.77 7.83 -10.83 -0.08 -12.85 15 20 C 0.16 3.62 10.57 -17.11 -0.18 3.44 15 21 H 0.08 0.99 8.14 -51.93 -0.42 0.56 15 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 23 H 0.09 1.34 8.09 -51.93 -0.42 0.91 15 24 H 0.18 2.83 8.06 -52.49 -0.42 2.41 15 25 H 0.09 1.82 8.06 -52.48 -0.42 1.40 15 26 H 0.10 2.17 8.06 -52.49 -0.42 1.75 15 27 H 0.28 6.25 8.29 -40.82 -0.34 5.91 15 28 H 0.12 2.48 8.06 -52.49 -0.42 2.06 15 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -28.01 258.62 -5.77 -33.78 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -2.50 Total: 3.01 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.25 Total: -18.39 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.92 Total: -36.52 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.51 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.01 -5.77 -33.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242602089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.307 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds