Wall clock time and date at job start Sun Mar 29 2020 21:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33898 * 126.91821 * 2 1 4 4 N 1.20826 * 111.92688 * 180.02562 * 3 2 1 5 5 C 1.29937 * 112.10098 * 359.71883 * 4 3 2 6 6 C 1.37138 * 126.91635 * 180.02562 * 2 1 3 7 7 C 1.47912 * 128.21677 * 359.95736 * 6 2 1 8 8 C 1.40313 * 120.34918 * 129.98176 * 7 6 2 9 9 C 1.36618 * 118.61025 * 179.74198 * 8 7 6 10 10 C 1.40912 * 119.25854 * 0.55752 * 9 8 7 11 11 C 1.40934 * 119.67625 * 179.70218 * 10 9 8 12 12 H 1.07999 * 120.00074 * 359.72725 * 11 10 9 13 13 C 1.40045 * 119.99933 * 179.72962 * 11 10 9 14 14 N 1.30752 * 120.00003 * 359.72510 * 13 11 10 15 15 Si 1.86795 * 119.99981 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47317 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47320 * 120.00329 * 15 13 11 18 18 H 1.48507 * 109.47345 * 239.99884 * 15 13 11 19 19 N 1.33794 * 120.64600 * 359.43082 * 10 9 8 20 20 C 1.31185 * 121.50624 * 0.26814 * 19 10 9 21 21 H 1.09001 * 109.47299 * 269.97611 * 1 2 3 22 22 H 1.08999 * 109.46871 * 29.97802 * 1 2 3 23 23 H 1.08999 * 109.47061 * 149.97462 * 1 2 3 24 24 H 1.08002 * 126.87913 * 180.27019 * 5 4 3 25 25 H 1.08003 * 120.69460 * 0.03659 * 8 7 6 26 26 H 1.07996 * 120.37220 * 180.28715 * 9 8 7 27 27 H 0.97000 * 120.00238 * 180.02562 * 14 13 11 28 28 H 1.07997 * 119.66592 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3113 1.0705 0.0000 4 7 3.4784 0.7580 -0.0005 5 6 3.6393 -0.5314 0.0050 6 6 2.3307 -1.0964 -0.0005 7 6 1.9512 -2.5260 -0.0003 8 6 2.5208 -3.4109 -0.9284 9 6 2.1487 -4.7249 -0.8930 10 6 1.2012 -5.1470 0.0609 11 6 0.8064 -6.4992 0.1012 12 1 1.2262 -7.2055 -0.5997 13 6 -0.1305 -6.9272 1.0501 14 7 -0.6349 -6.0732 1.9021 15 14 -0.6545 -8.7193 1.1030 16 1 0.0611 -9.4758 0.0442 17 1 -0.3228 -9.2930 2.4319 18 1 -2.1188 -8.8140 0.8746 19 7 0.6769 -4.2775 0.9322 20 6 1.0187 -3.0110 0.9269 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.5768 -1.0676 0.0099 25 1 3.2418 -3.0614 -1.6526 26 1 2.5726 -5.4315 -1.5910 27 1 -1.2835 -6.3696 2.5596 28 1 0.5771 -2.3351 1.6441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242602089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:12 Heat of formation + Delta-G solvation = 68.245791 kcal Electronic energy + Delta-G solvation = -14963.338423 eV Core-core repulsion = 12367.633917 eV Total energy + Delta-G solvation = -2595.704506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.71825 -40.06348 -36.07938 -34.87304 -34.00138 -32.53716 -31.57359 -28.75621 -27.53319 -24.44690 -23.76452 -22.80824 -21.44711 -19.43618 -18.50323 -18.06966 -17.42915 -16.36892 -16.09189 -15.87087 -15.06268 -14.50082 -14.35531 -13.92001 -13.90297 -13.73364 -13.32179 -12.89361 -12.80159 -12.71162 -12.29250 -12.19792 -11.77126 -11.43899 -11.14486 -10.39745 -10.10348 -9.53229 -9.22221 -8.34522 -6.53058 0.41122 0.81113 1.15018 1.41637 1.42571 1.57652 1.65174 2.21518 2.26191 2.80199 3.46310 3.81225 3.88222 4.15260 4.28559 4.33977 4.42969 4.67911 4.72614 4.81581 4.89723 4.99079 5.09596 5.16448 5.25849 5.47898 5.66416 5.86148 6.09349 6.23553 6.66785 6.91104 7.36444 8.13813 8.38317 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.055795 B = 0.006136 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.714726 B = 4562.221972 C = 4878.933609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.045 4.045 3 O 0.089 5.911 4 N -0.392 5.392 5 C -0.009 4.009 6 C -0.130 4.130 7 C -0.227 4.227 8 C -0.036 4.036 9 C -0.285 4.285 10 C 0.222 3.778 11 C -0.452 4.452 12 H 0.093 0.907 13 C 0.023 3.977 14 N -0.745 5.745 15 Si 0.988 3.012 16 H -0.253 1.253 17 H -0.267 1.267 18 H -0.265 1.265 19 N -0.519 5.519 20 C 0.140 3.860 21 H 0.098 0.902 22 H 0.104 0.896 23 H 0.080 0.920 24 H 0.202 0.798 25 H 0.122 0.878 26 H 0.113 0.887 27 H 0.282 0.718 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 4.884 -2.119 5.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 O 0.026 5.974 4 N -0.098 5.098 5 C -0.188 4.188 6 C -0.134 4.134 7 C -0.233 4.233 8 C -0.059 4.059 9 C -0.307 4.307 10 C 0.098 3.902 11 C -0.482 4.482 12 H 0.111 0.889 13 C -0.200 4.200 14 N -0.366 5.366 15 Si 0.808 3.192 16 H -0.176 1.176 17 H -0.192 1.192 18 H -0.190 1.190 19 N -0.231 5.231 20 C -0.026 4.026 21 H 0.116 0.884 22 H 0.123 0.877 23 H 0.098 0.902 24 H 0.219 0.781 25 H 0.140 0.860 26 H 0.131 0.869 27 H 0.093 0.907 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.038 5.595 -1.356 5.757 hybrid contribution 0.357 -1.168 -0.485 1.314 sum 0.396 4.428 -1.842 4.812 Atomic orbital electron populations 1.20374 0.81927 1.04901 1.04863 1.25106 0.97015 0.84886 1.03869 1.84603 1.11266 1.33354 1.68226 1.73571 0.97748 1.17424 1.21065 1.25385 1.00560 0.89850 1.02959 1.19820 0.91956 0.93921 1.07739 1.18251 1.09368 0.90169 1.05533 1.20850 0.96580 0.92537 0.95956 1.21574 1.06836 0.96698 1.05632 1.19070 0.88991 0.94021 0.88099 1.20087 1.20130 0.93562 1.14430 0.88908 1.27043 0.94939 1.04330 0.93702 1.70219 1.18231 1.37231 1.10903 0.85063 0.78798 0.75879 0.79439 1.17644 1.19155 1.18966 1.68760 1.27591 1.01703 1.25086 1.22962 0.92264 0.92889 0.94534 0.88407 0.87693 0.90156 0.78118 0.85997 0.86931 0.90702 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.54 9.97 71.24 0.71 -0.83 15 2 C -0.05 -1.42 7.54 25.43 0.19 -1.23 15 3 O 0.09 2.86 11.16 73.08 0.82 3.68 15 4 N -0.39 -13.33 12.02 -57.89 -0.70 -14.02 15 5 C -0.01 -0.32 12.20 86.04 1.05 0.73 15 6 C -0.13 -4.69 5.77 -19.90 -0.11 -4.81 15 7 C -0.23 -9.55 5.71 -19.74 -0.11 -9.66 15 8 C -0.04 -1.51 9.85 22.40 0.22 -1.29 15 9 C -0.29 -13.41 9.76 22.55 0.22 -13.19 15 10 C 0.22 11.83 6.55 40.16 0.26 12.09 15 11 C -0.45 -23.46 9.11 23.37 0.21 -23.25 15 12 H 0.09 4.48 7.85 -2.91 -0.02 4.45 15 13 C 0.02 1.12 5.50 85.29 0.47 1.59 15 14 N -0.74 -38.47 11.44 21.84 0.25 -38.22 15 15 Si 0.99 36.17 29.56 68.60 2.03 38.20 15 16 H -0.25 -8.89 7.11 99.48 0.71 -8.19 15 17 H -0.27 -9.46 7.11 99.48 0.71 -8.75 15 18 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 19 N -0.52 -27.82 7.83 -188.19 -1.47 -29.29 15 20 C 0.14 6.48 10.57 85.26 0.90 7.38 15 21 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.08 2.20 8.09 -2.39 -0.02 2.18 15 24 H 0.20 5.76 8.06 -2.91 -0.02 5.74 15 25 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 26 H 0.11 4.86 8.06 -2.91 -0.02 4.83 15 27 H 0.28 13.05 8.29 -92.71 -0.77 12.28 15 28 H 0.13 5.52 8.06 -2.91 -0.02 5.50 15 Total: -1.00 -60.45 258.62 6.11 -54.33 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.18 Total: 17.79 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.01 Total: -32.47 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.92 Total: -81.53 kcal Atomic # 8 Polarization: 2.86 SS G_CDS: 0.82 Total: 3.68 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -60.45 6.11 -54.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242602089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.580 kcal (2) G-P(sol) polarization free energy of solvation -60.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds