Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34004 * 126.87163 * 2 1 4 4 N 1.20846 * 111.83962 * 180.02562 * 3 2 1 5 5 C 1.30024 * 111.95050 * 359.70256 * 4 3 2 6 6 C 1.36594 * 126.87666 * 180.02562 * 2 1 3 7 7 C 1.48476 * 128.15785 * 359.95607 * 6 2 1 8 8 C 1.39695 * 120.40839 * 309.98362 * 7 6 2 9 9 N 1.31919 * 121.15340 * 180.02562 * 8 7 6 10 10 C 1.31525 * 122.11223 * 359.97438 * 9 8 7 11 11 C 1.40778 * 120.65829 * 359.71743 * 10 9 8 12 12 C 1.41442 * 120.60284 * 180.28655 * 11 10 9 13 13 H 1.07993 * 120.00030 * 330.76429 * 12 11 10 14 14 C 1.39927 * 119.99534 * 150.75519 * 12 11 10 15 15 N 1.30831 * 119.99499 * 161.73338 * 14 12 11 16 16 Si 1.86804 * 120.00500 * 341.73374 * 14 12 11 17 17 H 1.48493 * 109.46933 * 95.40566 * 16 14 12 18 18 H 1.48498 * 109.46883 * 215.40836 * 16 14 12 19 19 H 1.48497 * 109.46579 * 335.40777 * 16 14 12 20 20 C 1.39104 * 120.40553 * 130.00824 * 7 6 2 21 21 H 1.08995 * 109.47423 * 269.95394 * 1 2 3 22 22 H 1.09000 * 109.47243 * 29.95980 * 1 2 3 23 23 H 1.09006 * 109.46692 * 149.95319 * 1 2 3 24 24 H 1.08001 * 126.86600 * 180.33184 * 5 4 3 25 25 H 1.08005 * 119.42337 * 359.97438 * 8 7 6 26 26 H 1.07998 * 119.66702 * 180.02562 * 10 9 8 27 27 H 0.97006 * 119.99885 * 179.97438 * 15 14 12 28 28 H 1.08006 * 120.95009 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3111 1.0720 0.0000 4 7 3.4782 0.7586 -0.0005 5 6 3.6348 -0.5322 0.0054 6 6 2.3267 -1.0927 -0.0005 7 6 1.9433 -2.5271 -0.0002 8 6 1.0134 -3.0102 0.9235 9 7 0.6625 -4.2818 0.9372 10 6 1.1635 -5.1545 0.0903 11 6 2.1025 -4.7559 -0.8799 12 6 2.6360 -5.6942 -1.7939 13 1 2.7292 -6.7319 -1.5098 14 6 3.0430 -5.2778 -3.0663 15 7 3.8475 -6.0286 -3.7739 16 14 2.4377 -3.6501 -3.7546 17 1 3.4451 -2.5932 -3.4843 18 1 2.2345 -3.7773 -5.2201 19 1 1.1522 -3.2861 -3.1063 20 6 2.5061 -3.4064 -0.9195 21 1 -0.3634 -0.0008 1.0276 22 1 -0.3634 0.8903 -0.5132 23 1 -0.3633 -0.8896 -0.5146 24 1 4.5706 -1.0713 0.0113 25 1 0.5746 -2.3310 1.6395 26 1 0.8478 -6.1863 0.1366 27 1 4.1293 -5.7402 -4.6562 28 1 3.2277 -3.0635 -1.6462 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242603352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = 76.249654 kcal Electronic energy + Delta-G solvation = -15275.535092 eV Core-core repulsion = 12680.177660 eV Total energy + Delta-G solvation = -2595.357432 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.61243 -38.70606 -34.49845 -34.00032 -32.91772 -31.37176 -30.15476 -27.39493 -25.64465 -23.77327 -22.12208 -21.60149 -20.03723 -17.59723 -17.32639 -16.87115 -16.14984 -15.25624 -14.85887 -14.52349 -13.66772 -13.23555 -13.10165 -13.08167 -12.59476 -12.32492 -12.17683 -11.97355 -11.42088 -11.08815 -10.98660 -10.55760 -10.20351 -10.06808 -9.60647 -9.26206 -8.38296 -8.25838 -7.79386 -7.17205 -4.72797 1.54576 2.07697 2.46052 2.76210 2.96801 3.06243 3.14803 3.31256 3.78560 4.33843 4.60099 4.84021 5.14571 5.29240 5.45754 5.53058 5.66224 5.72341 5.82428 6.03256 6.07070 6.18151 6.33020 6.53379 6.72253 6.99175 7.22975 7.43996 7.62854 8.08754 8.26924 8.48590 8.51613 9.26005 9.83738 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.010118 C = 0.008390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.811321 B = 2766.717958 C = 3336.671486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.037 4.037 3 O 0.091 5.909 4 N -0.374 5.374 5 C 0.004 3.996 6 C -0.138 4.138 7 C -0.031 4.031 8 C -0.025 4.025 9 N -0.459 5.459 10 C 0.008 3.992 11 C 0.045 3.955 12 C -0.432 4.432 13 H 0.098 0.902 14 C 0.086 3.914 15 N -0.794 5.794 16 Si 0.905 3.095 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.245 1.245 20 C -0.192 4.192 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.190 0.810 25 H 0.125 0.875 26 H 0.137 0.863 27 H 0.289 0.711 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 8.592 2.540 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 O 0.027 5.973 4 N -0.079 5.079 5 C -0.175 4.175 6 C -0.142 4.142 7 C -0.034 4.034 8 C -0.180 4.180 9 N -0.166 5.166 10 C -0.156 4.156 11 C 0.040 3.960 12 C -0.460 4.460 13 H 0.116 0.884 14 C -0.135 4.135 15 N -0.417 5.417 16 Si 0.731 3.269 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.168 1.168 20 C -0.217 4.217 21 H 0.105 0.895 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.207 0.793 25 H 0.143 0.857 26 H 0.154 0.846 27 H 0.100 0.900 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.586 9.278 2.930 10.369 hybrid contribution 0.499 0.089 -1.164 1.270 sum -3.087 9.366 1.766 10.019 Atomic orbital electron populations 1.20315 0.83859 1.04439 1.03956 1.24522 0.96048 0.85444 1.04013 1.84687 1.11399 1.33120 1.68100 1.73675 0.97136 1.17005 1.20065 1.25110 0.99979 0.89814 1.02567 1.20008 0.91808 0.94756 1.07653 1.18434 0.98823 0.88147 0.97972 1.21738 1.02195 0.92326 1.01743 1.67031 1.24240 1.02637 1.22673 1.22673 0.97933 0.98258 0.96695 1.18563 0.91128 0.91965 0.94308 1.19471 1.32631 0.97420 0.96523 0.88375 1.26161 0.91625 0.98644 0.97109 1.69679 1.22344 1.38017 1.11694 0.86380 0.81993 0.81062 0.77447 1.19456 1.21170 1.16793 1.21389 1.04232 0.94297 1.01763 0.89464 0.90273 0.88783 0.79299 0.85704 0.84583 0.90042 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 9.96 36.01 0.36 -0.45 15 2 C -0.04 -0.58 7.52 -34.90 -0.26 -0.85 15 3 O 0.09 1.49 11.17 17.29 0.19 1.69 15 4 N -0.37 -6.57 12.04 30.62 0.37 -6.20 15 5 C 0.00 0.07 12.19 -16.75 -0.20 -0.14 15 6 C -0.14 -2.54 5.77 -104.71 -0.60 -3.15 15 7 C -0.03 -0.65 5.66 -104.81 -0.59 -1.24 15 8 C -0.02 -0.51 10.54 -16.97 -0.18 -0.69 15 9 N -0.46 -10.19 10.32 -12.28 -0.13 -10.31 15 10 C 0.01 0.19 10.96 -16.72 -0.18 0.01 15 11 C 0.05 1.09 5.11 -106.71 -0.55 0.54 15 12 C -0.43 -10.92 9.60 -37.73 -0.36 -11.28 15 13 H 0.10 2.56 8.06 -52.49 -0.42 2.13 15 14 C 0.09 2.12 5.42 -17.35 -0.09 2.02 15 15 N -0.79 -20.02 13.93 55.55 0.77 -19.24 15 16 Si 0.91 19.92 24.53 -169.99 -4.17 15.75 15 17 H -0.27 -5.86 6.70 56.52 0.38 -5.48 15 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 19 H -0.24 -5.52 6.86 56.52 0.39 -5.14 15 20 C -0.19 -4.41 7.03 -38.25 -0.27 -4.68 15 21 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.09 1.22 8.08 -51.93 -0.42 0.80 15 24 H 0.19 2.98 8.06 -52.49 -0.42 2.55 15 25 H 0.13 2.24 8.06 -52.48 -0.42 1.81 15 26 H 0.14 2.85 8.06 -52.49 -0.42 2.43 15 27 H 0.29 6.59 8.30 -40.82 -0.34 6.25 15 28 H 0.11 2.54 4.79 -52.48 -0.25 2.29 15 LS Contribution 252.11 15.07 3.80 3.80 Total: -1.00 -27.14 252.11 -4.48 -31.62 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -2.38 Total: 2.79 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.94 Total: -19.89 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 1.02 Total: -35.76 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.19 Total: 1.69 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.75 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.14 -4.48 -31.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242603352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.874 kcal (2) G-P(sol) polarization free energy of solvation -27.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds