Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34004 * 126.87163 * 2 1 4 4 N 1.20846 * 111.83962 * 180.02562 * 3 2 1 5 5 C 1.30024 * 111.95050 * 359.70256 * 4 3 2 6 6 C 1.36594 * 126.87666 * 180.02562 * 2 1 3 7 7 C 1.48476 * 128.15785 * 359.95607 * 6 2 1 8 8 C 1.39695 * 120.40839 * 309.98362 * 7 6 2 9 9 N 1.31919 * 121.15340 * 180.02562 * 8 7 6 10 10 C 1.31525 * 122.11223 * 359.97438 * 9 8 7 11 11 C 1.40778 * 120.65829 * 359.71743 * 10 9 8 12 12 C 1.41442 * 120.60284 * 180.28655 * 11 10 9 13 13 H 1.07993 * 120.00030 * 330.76429 * 12 11 10 14 14 C 1.39927 * 119.99534 * 150.75519 * 12 11 10 15 15 N 1.30831 * 119.99499 * 161.73338 * 14 12 11 16 16 Si 1.86804 * 120.00500 * 341.73374 * 14 12 11 17 17 H 1.48493 * 109.46933 * 95.40566 * 16 14 12 18 18 H 1.48498 * 109.46883 * 215.40836 * 16 14 12 19 19 H 1.48497 * 109.46579 * 335.40777 * 16 14 12 20 20 C 1.39104 * 120.40553 * 130.00824 * 7 6 2 21 21 H 1.08995 * 109.47423 * 269.95394 * 1 2 3 22 22 H 1.09000 * 109.47243 * 29.95980 * 1 2 3 23 23 H 1.09006 * 109.46692 * 149.95319 * 1 2 3 24 24 H 1.08001 * 126.86600 * 180.33184 * 5 4 3 25 25 H 1.08005 * 119.42337 * 359.97438 * 8 7 6 26 26 H 1.07998 * 119.66702 * 180.02562 * 10 9 8 27 27 H 0.97006 * 119.99885 * 179.97438 * 15 14 12 28 28 H 1.08006 * 120.95009 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3111 1.0720 0.0000 4 7 3.4782 0.7586 -0.0005 5 6 3.6348 -0.5322 0.0054 6 6 2.3267 -1.0927 -0.0005 7 6 1.9433 -2.5271 -0.0002 8 6 1.0134 -3.0102 0.9235 9 7 0.6625 -4.2818 0.9372 10 6 1.1635 -5.1545 0.0903 11 6 2.1025 -4.7559 -0.8799 12 6 2.6360 -5.6942 -1.7939 13 1 2.7292 -6.7319 -1.5098 14 6 3.0430 -5.2778 -3.0663 15 7 3.8475 -6.0286 -3.7739 16 14 2.4377 -3.6501 -3.7546 17 1 3.4451 -2.5932 -3.4843 18 1 2.2345 -3.7773 -5.2201 19 1 1.1522 -3.2861 -3.1063 20 6 2.5061 -3.4064 -0.9195 21 1 -0.3634 -0.0008 1.0276 22 1 -0.3634 0.8903 -0.5132 23 1 -0.3633 -0.8896 -0.5146 24 1 4.5706 -1.0713 0.0113 25 1 0.5746 -2.3310 1.6395 26 1 0.8478 -6.1863 0.1366 27 1 4.1293 -5.7402 -4.6562 28 1 3.2277 -3.0635 -1.6462 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242603352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = 60.106350 kcal Electronic energy + Delta-G solvation = -15276.235118 eV Core-core repulsion = 12680.177660 eV Total energy + Delta-G solvation = -2596.057459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.94714 -40.45510 -36.07258 -35.67024 -34.17332 -33.17160 -31.72436 -28.57680 -27.45996 -25.31204 -23.84393 -23.02095 -21.56602 -19.37325 -18.67869 -18.30303 -17.79236 -17.00615 -16.55189 -16.00596 -15.08523 -14.94086 -14.58997 -14.14040 -14.04863 -13.95827 -13.70843 -13.39073 -13.16184 -12.77636 -12.36695 -12.25794 -11.91999 -11.57403 -11.41217 -10.67960 -10.15176 -9.98286 -9.43490 -9.01756 -6.63149 0.10811 0.57729 0.69318 1.18099 1.23062 1.37455 1.38686 2.00152 2.07911 2.52786 3.24200 3.40227 3.64349 3.88822 4.06820 4.11704 4.25117 4.43279 4.53700 4.69990 4.74291 4.76838 4.93260 4.97121 5.17693 5.25619 5.48989 5.64195 5.83464 6.18329 6.44939 6.63803 7.19320 7.49224 8.05000 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.010118 C = 0.008390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.811321 B = 2766.717958 C = 3336.671486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 O 0.097 5.903 4 N -0.386 5.386 5 C -0.001 4.001 6 C -0.178 4.178 7 C -0.023 4.023 8 C -0.009 4.009 9 N -0.467 5.467 10 C -0.002 4.002 11 C 0.034 3.966 12 C -0.464 4.464 13 H 0.073 0.927 14 C 0.057 3.943 15 N -0.832 5.832 16 Si 0.952 3.048 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.253 1.253 20 C -0.201 4.201 21 H 0.115 0.885 22 H 0.109 0.891 23 H 0.085 0.915 24 H 0.199 0.801 25 H 0.160 0.840 26 H 0.145 0.855 27 H 0.297 0.703 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 11.101 3.314 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 O 0.034 5.966 4 N -0.091 5.091 5 C -0.180 4.180 6 C -0.183 4.183 7 C -0.025 4.025 8 C -0.165 4.165 9 N -0.173 5.173 10 C -0.164 4.164 11 C 0.029 3.971 12 C -0.494 4.494 13 H 0.091 0.909 14 C -0.160 4.160 15 N -0.456 5.456 16 Si 0.776 3.224 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.177 1.177 20 C -0.226 4.226 21 H 0.133 0.867 22 H 0.127 0.873 23 H 0.104 0.896 24 H 0.216 0.784 25 H 0.177 0.823 26 H 0.163 0.837 27 H 0.108 0.892 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.990 11.773 3.703 13.312 hybrid contribution 0.841 -0.549 -1.216 1.578 sum -4.149 11.224 2.486 12.222 Atomic orbital electron populations 1.20601 0.80792 1.05545 1.06032 1.25157 0.97457 0.84295 1.00216 1.84693 1.11164 1.33108 1.67615 1.73677 0.97751 1.16830 1.20819 1.25325 1.00402 0.89971 1.02262 1.19894 0.92892 0.94079 1.11391 1.18541 0.97939 0.89289 0.96744 1.22363 1.00840 0.92122 1.01143 1.67126 1.24351 1.03306 1.22541 1.22840 0.97855 0.99061 0.96621 1.18648 0.91531 0.92438 0.94478 1.19426 1.35331 0.96721 0.97875 0.90868 1.26672 0.91487 1.00910 0.96966 1.69694 1.23763 1.39604 1.12586 0.85668 0.80961 0.78234 0.77547 1.19169 1.19670 1.17668 1.21489 1.04480 0.94311 1.02352 0.86687 0.87252 0.89598 0.78403 0.82257 0.83717 0.89196 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 9.96 71.24 0.71 -0.66 15 2 C -0.01 -0.20 7.52 25.30 0.19 -0.01 15 3 O 0.10 2.85 11.17 72.07 0.81 3.66 15 4 N -0.39 -12.58 12.04 -58.19 -0.70 -13.28 15 5 C 0.00 -0.04 12.19 85.97 1.05 1.01 15 6 C -0.18 -6.08 5.77 -19.92 -0.11 -6.19 15 7 C -0.02 -0.89 5.66 -19.99 -0.11 -1.00 15 8 C -0.01 -0.33 10.54 85.03 0.90 0.57 15 9 N -0.47 -19.76 10.32 -192.77 -1.99 -21.75 15 10 C 0.00 -0.07 10.96 85.36 0.94 0.86 15 11 C 0.03 1.63 5.11 -21.22 -0.11 1.52 15 12 C -0.46 -24.32 9.60 23.47 0.23 -24.09 15 13 H 0.07 4.06 8.06 -2.91 -0.02 4.03 15 14 C 0.06 2.88 5.42 85.25 0.46 3.34 15 15 N -0.83 -43.07 13.93 21.82 0.30 -42.77 15 16 Si 0.95 40.96 24.53 68.60 1.68 42.64 15 17 H -0.27 -11.20 6.70 99.48 0.67 -10.53 15 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 19 H -0.25 -11.09 6.86 99.48 0.68 -10.40 15 20 C -0.20 -9.09 7.03 23.13 0.16 -8.93 15 21 H 0.11 1.62 8.14 -2.39 -0.02 1.60 15 22 H 0.11 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.09 1.85 8.08 -2.38 -0.02 1.83 15 24 H 0.20 5.98 8.06 -2.91 -0.02 5.96 15 25 H 0.16 4.94 8.06 -2.91 -0.02 4.91 15 26 H 0.15 6.13 8.06 -2.91 -0.02 6.10 15 27 H 0.30 13.83 8.30 -92.70 -0.77 13.06 15 28 H 0.11 4.82 4.79 -2.91 -0.01 4.81 15 Total: -1.00 -57.98 252.11 5.52 -52.46 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.12 Total: 12.62 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.29 Total: -33.58 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.39 Total: -77.80 kcal Atomic # 8 Polarization: 2.85 SS G_CDS: 0.81 Total: 3.66 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.68 Total: 42.64 kcal Total: -57.98 5.52 -52.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242603352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.569 kcal (2) G-P(sol) polarization free energy of solvation -57.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds