Wall clock time and date at job start Sun Mar 29 2020 21:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33861 * 125.82894 * 2 1 4 4 C 1.34223 * 110.85735 * 180.30221 * 3 2 1 5 5 C 1.34239 * 109.15379 * 359.72239 * 4 3 2 6 6 C 1.36583 * 125.82572 * 179.82525 * 2 1 3 7 7 C 1.47574 * 127.18234 * 359.97438 * 6 2 1 8 8 N 1.33064 * 120.55563 * 312.66392 * 7 6 2 9 9 C 1.31908 * 120.02886 * 180.02562 * 8 7 6 10 10 C 1.39004 * 121.23040 * 0.02562 * 9 8 7 11 11 N 1.31529 * 121.14908 * 0.25313 * 10 9 8 12 12 C 1.34090 * 119.86412 * 359.50128 * 11 10 9 13 13 C 1.40683 * 120.58788 * 180.22392 * 12 11 10 14 14 H 1.08002 * 120.00716 * 172.10041 * 13 12 11 15 15 C 1.40118 * 119.99888 * 352.09420 * 13 12 11 16 16 N 1.30723 * 120.00215 * 166.73681 * 15 13 12 17 17 Si 1.86799 * 119.99811 * 346.74483 * 15 13 12 18 18 H 1.48497 * 109.47490 * 84.75440 * 17 15 13 19 19 H 1.48498 * 109.46842 * 204.75441 * 17 15 13 20 20 H 1.48500 * 109.46927 * 324.75077 * 17 15 13 21 21 H 1.09007 * 109.47335 * 270.17304 * 1 2 3 22 22 H 1.08996 * 109.46794 * 30.17629 * 1 2 3 23 23 H 1.09001 * 109.47161 * 150.17500 * 1 2 3 24 24 H 1.08004 * 125.42627 * 179.74365 * 4 3 2 25 25 H 1.08007 * 126.99800 * 180.02562 * 5 4 3 26 26 H 1.07997 * 119.38754 * 179.97438 * 9 8 7 27 27 H 1.08002 * 119.42862 * 179.97438 * 10 9 8 28 28 H 0.96997 * 120.00099 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2906 1.0853 0.0000 4 6 3.5872 0.7386 -0.0066 5 6 3.6851 -0.6003 -0.0050 6 6 2.3064 -1.1074 0.0034 7 6 1.8752 -2.5187 0.0082 8 7 0.9351 -2.9359 0.8525 9 6 0.5579 -4.1999 0.8483 10 6 1.1255 -5.1185 -0.0270 11 7 2.0621 -4.7588 -0.8776 12 6 2.4760 -3.4839 -0.9152 13 6 3.4734 -3.0816 -1.8222 14 1 3.7099 -2.0338 -1.9350 15 6 4.1600 -4.0402 -2.5791 16 7 4.8920 -3.6681 -3.5962 17 14 4.0292 -5.8498 -2.1347 18 1 2.8125 -6.4267 -2.7609 19 1 5.2298 -6.5693 -2.6309 20 1 3.9415 -5.9921 -0.6592 21 1 -0.3634 0.0031 1.0277 22 1 -0.3633 0.8884 -0.5166 23 1 -0.3633 -0.8916 -0.5111 24 1 4.4194 1.4270 -0.0120 25 1 4.5928 -1.1856 -0.0087 26 1 -0.2057 -4.5274 1.5383 27 1 0.7950 -6.1465 -0.0053 28 1 5.3670 -4.3318 -4.1204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243058847.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:02 Heat of formation + Delta-G solvation = 34.682212 kcal Electronic energy + Delta-G solvation = -15429.825908 eV Core-core repulsion = 12832.665976 eV Total energy + Delta-G solvation = -2597.159932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.62463 -38.93850 -34.23582 -33.38490 -32.17219 -31.17801 -29.96324 -26.63220 -25.71441 -23.23172 -21.95105 -20.64538 -19.10720 -17.90281 -16.73969 -16.22492 -15.45008 -15.22692 -14.62646 -13.94274 -13.43807 -13.34183 -12.80617 -12.51053 -12.45714 -12.09823 -11.83679 -11.68139 -11.32518 -11.16239 -10.96549 -10.63957 -9.87404 -9.56550 -9.24054 -8.93285 -8.16413 -7.68337 -7.36931 -7.15675 -4.91260 1.97109 2.46248 2.64443 3.26900 3.37116 3.38412 3.49000 3.60690 4.20005 4.39883 5.16708 5.32509 5.43867 5.66850 5.68032 5.80522 5.99314 6.03677 6.08194 6.29424 6.34243 6.49460 6.62780 6.72451 6.87762 6.98329 7.21248 7.50818 7.85890 7.88732 8.22084 8.27197 8.90467 9.36796 9.67945 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.011354 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.938660 B = 2465.446482 C = 3313.297884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.016 4.016 3 O -0.190 6.190 4 C -0.062 4.062 5 C -0.180 4.180 6 C -0.077 4.077 7 C 0.031 3.969 8 N -0.405 5.405 9 C -0.130 4.130 10 C 0.112 3.888 11 N -0.550 5.550 12 C 0.204 3.796 13 C -0.365 4.365 14 H 0.111 0.889 15 C 0.077 3.923 16 N -0.772 5.772 17 Si 1.001 2.999 18 H -0.272 1.272 19 H -0.325 1.325 20 H -0.264 1.264 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.196 0.804 25 H 0.150 0.850 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 3.150 3.529 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 O -0.088 6.088 4 C -0.128 4.128 5 C -0.200 4.200 6 C -0.080 4.080 7 C -0.121 4.121 8 N -0.116 5.116 9 C -0.287 4.287 10 C -0.054 4.054 11 N -0.272 5.272 12 C 0.080 3.920 13 C -0.395 4.395 14 H 0.129 0.871 15 C -0.149 4.149 16 N -0.392 5.392 17 Si 0.834 3.166 18 H -0.198 1.198 19 H -0.258 1.258 20 H -0.190 1.190 21 H 0.094 0.906 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.213 0.787 25 H 0.168 0.832 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.463 3.417 3.327 5.368 hybrid contribution 0.251 -1.019 0.012 1.049 sum -2.212 2.399 3.339 4.669 Atomic orbital electron populations 1.20075 0.85340 1.02744 1.02844 1.22494 0.93379 0.83545 1.07293 1.83646 1.16769 1.35121 1.73286 1.23578 0.83691 0.96165 1.09352 1.22864 0.97564 0.93812 1.05744 1.19319 0.91590 0.90843 1.06266 1.20264 1.00778 0.91778 0.99298 1.67772 1.09182 1.16298 1.18378 1.22239 1.08918 0.90442 1.07110 1.22972 0.91814 0.99297 0.91305 1.67507 1.16799 1.17225 1.25665 1.20293 0.93026 0.87175 0.91518 1.19683 1.10626 0.97495 1.11728 0.87089 1.26614 0.91283 1.05205 0.91842 1.69607 1.18960 1.39468 1.11205 0.84512 0.74783 0.76936 0.80342 1.19834 1.25767 1.19005 0.90606 0.91779 0.89900 0.78716 0.83185 0.85055 0.84977 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.89 10.06 36.01 0.36 -0.52 15 2 C -0.02 -0.33 7.39 -34.91 -0.26 -0.58 15 3 O -0.19 -3.54 10.54 7.10 0.07 -3.46 15 4 C -0.06 -1.06 12.03 29.32 0.35 -0.71 15 5 C -0.18 -3.62 9.17 -37.49 -0.34 -3.97 15 6 C -0.08 -1.74 5.48 -103.18 -0.57 -2.30 15 7 C 0.03 0.76 6.50 -80.21 -0.52 0.23 15 8 N -0.40 -9.48 10.26 -7.86 -0.08 -9.56 15 9 C -0.13 -2.80 11.17 -17.24 -0.19 -2.99 15 10 C 0.11 2.45 11.17 -17.40 -0.19 2.26 15 11 N -0.55 -13.85 5.14 -9.56 -0.05 -13.90 15 12 C 0.20 5.28 6.46 -82.64 -0.53 4.75 15 13 C -0.37 -9.59 9.00 -37.95 -0.34 -9.93 15 14 H 0.11 2.96 5.99 -52.49 -0.31 2.64 15 15 C 0.08 1.96 5.52 -17.32 -0.10 1.87 15 16 N -0.77 -19.39 13.92 55.56 0.77 -18.62 15 17 Si 1.00 23.30 25.43 -169.99 -4.32 18.98 15 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 19 H -0.33 -7.25 7.11 56.52 0.40 -6.84 15 20 H -0.26 -6.43 6.63 56.52 0.37 -6.05 15 21 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.08 1.47 7.94 -51.93 -0.41 1.06 15 24 H 0.20 2.42 8.06 -52.48 -0.42 1.99 15 25 H 0.15 2.97 7.97 -52.48 -0.42 2.55 15 26 H 0.13 2.38 8.06 -52.49 -0.42 1.96 15 27 H 0.13 2.40 8.06 -52.49 -0.42 1.98 15 28 H 0.30 6.70 8.29 -40.82 -0.34 6.36 15 LS Contribution 250.72 15.07 3.78 3.78 Total: -1.00 -29.29 250.72 -4.58 -33.87 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -2.42 Total: 0.81 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.33 Total: -11.90 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.64 Total: -42.08 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.32 Total: 18.98 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.29 -4.58 -33.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243058847.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.549 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds