Wall clock time and date at job start Sun Mar 29 2020 21:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33861 * 125.82894 * 2 1 4 4 C 1.34223 * 110.85735 * 180.30221 * 3 2 1 5 5 C 1.34239 * 109.15379 * 359.72239 * 4 3 2 6 6 C 1.36583 * 125.82572 * 179.82525 * 2 1 3 7 7 C 1.47574 * 127.18234 * 359.97438 * 6 2 1 8 8 N 1.33064 * 120.55563 * 312.66392 * 7 6 2 9 9 C 1.31908 * 120.02886 * 180.02562 * 8 7 6 10 10 C 1.39004 * 121.23040 * 0.02562 * 9 8 7 11 11 N 1.31529 * 121.14908 * 0.25313 * 10 9 8 12 12 C 1.34090 * 119.86412 * 359.50128 * 11 10 9 13 13 C 1.40683 * 120.58788 * 180.22392 * 12 11 10 14 14 H 1.08002 * 120.00716 * 172.10041 * 13 12 11 15 15 C 1.40118 * 119.99888 * 352.09420 * 13 12 11 16 16 N 1.30723 * 120.00215 * 166.73681 * 15 13 12 17 17 Si 1.86799 * 119.99811 * 346.74483 * 15 13 12 18 18 H 1.48497 * 109.47490 * 84.75440 * 17 15 13 19 19 H 1.48498 * 109.46842 * 204.75441 * 17 15 13 20 20 H 1.48500 * 109.46927 * 324.75077 * 17 15 13 21 21 H 1.09007 * 109.47335 * 270.17304 * 1 2 3 22 22 H 1.08996 * 109.46794 * 30.17629 * 1 2 3 23 23 H 1.09001 * 109.47161 * 150.17500 * 1 2 3 24 24 H 1.08004 * 125.42627 * 179.74365 * 4 3 2 25 25 H 1.08007 * 126.99800 * 180.02562 * 5 4 3 26 26 H 1.07997 * 119.38754 * 179.97438 * 9 8 7 27 27 H 1.08002 * 119.42862 * 179.97438 * 10 9 8 28 28 H 0.96997 * 120.00099 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2906 1.0853 0.0000 4 6 3.5872 0.7386 -0.0066 5 6 3.6851 -0.6003 -0.0050 6 6 2.3064 -1.1074 0.0034 7 6 1.8752 -2.5187 0.0082 8 7 0.9351 -2.9359 0.8525 9 6 0.5579 -4.1999 0.8483 10 6 1.1255 -5.1185 -0.0270 11 7 2.0621 -4.7588 -0.8776 12 6 2.4760 -3.4839 -0.9152 13 6 3.4734 -3.0816 -1.8222 14 1 3.7099 -2.0338 -1.9350 15 6 4.1600 -4.0402 -2.5791 16 7 4.8920 -3.6681 -3.5962 17 14 4.0292 -5.8498 -2.1347 18 1 2.8125 -6.4267 -2.7609 19 1 5.2298 -6.5693 -2.6309 20 1 3.9415 -5.9921 -0.6592 21 1 -0.3634 0.0031 1.0277 22 1 -0.3633 0.8884 -0.5166 23 1 -0.3633 -0.8916 -0.5111 24 1 4.4194 1.4270 -0.0120 25 1 4.5928 -1.1856 -0.0087 26 1 -0.2057 -4.5274 1.5383 27 1 0.7950 -6.1465 -0.0053 28 1 5.3670 -4.3318 -4.1204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243058847.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:01 Heat of formation + Delta-G solvation = 16.169109 kcal Electronic energy + Delta-G solvation = -15430.628696 eV Core-core repulsion = 12832.665976 eV Total energy + Delta-G solvation = -2597.962720 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.11942 -40.75296 -36.10330 -35.07690 -33.93132 -32.60034 -31.69240 -28.36351 -27.28465 -24.94279 -23.77740 -22.21005 -20.64861 -19.79686 -18.27174 -17.99387 -17.15672 -16.83834 -16.27501 -15.63034 -15.15772 -15.02849 -14.59293 -13.96888 -13.76233 -13.65484 -13.57888 -13.41332 -13.13108 -12.83913 -12.59226 -12.46430 -11.70615 -11.46130 -11.07812 -10.58504 -9.82999 -9.46500 -9.08934 -8.96470 -6.80124 0.20726 0.69367 1.07195 1.41380 1.51524 1.58613 1.79645 2.18914 2.35579 2.52922 3.47342 3.63792 3.92356 4.01288 4.10255 4.34466 4.40824 4.59805 4.71493 4.72469 4.83468 4.91460 5.01028 5.12222 5.20096 5.46750 5.63192 5.73597 5.92874 6.31924 6.37572 6.41656 7.07299 7.53930 7.85206 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.011354 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.938660 B = 2465.446482 C = 3313.297884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.015 4.015 3 O -0.186 6.186 4 C -0.034 4.034 5 C -0.214 4.214 6 C -0.123 4.123 7 C 0.019 3.981 8 N -0.416 5.416 9 C -0.117 4.117 10 C 0.099 3.901 11 N -0.570 5.570 12 C 0.188 3.812 13 C -0.395 4.395 14 H 0.094 0.906 15 C 0.053 3.947 16 N -0.797 5.797 17 Si 1.047 2.953 18 H -0.278 1.278 19 H -0.310 1.310 20 H -0.281 1.281 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.066 0.934 24 H 0.246 0.754 25 H 0.141 0.859 26 H 0.172 0.828 27 H 0.174 0.826 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 3.407 4.453 6.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.066 4.066 3 O -0.083 6.083 4 C -0.100 4.100 5 C -0.234 4.234 6 C -0.125 4.125 7 C -0.131 4.131 8 N -0.128 5.128 9 C -0.274 4.274 10 C -0.065 4.065 11 N -0.293 5.293 12 C 0.063 3.937 13 C -0.426 4.426 14 H 0.112 0.888 15 C -0.171 4.171 16 N -0.420 5.420 17 Si 0.879 3.121 18 H -0.204 1.204 19 H -0.242 1.242 20 H -0.209 1.209 21 H 0.108 0.892 22 H 0.112 0.888 23 H 0.085 0.915 24 H 0.262 0.738 25 H 0.159 0.841 26 H 0.189 0.811 27 H 0.191 0.809 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.445 3.689 4.245 6.596 hybrid contribution 0.428 -1.069 -0.131 1.159 sum -3.017 2.620 4.115 5.736 Atomic orbital electron populations 1.20150 0.83229 1.03352 1.03937 1.22962 0.94707 0.83143 1.05805 1.83686 1.17300 1.34539 1.72821 1.24397 0.84068 0.95831 1.05690 1.22929 0.96754 0.95317 1.08368 1.19579 0.93235 0.90788 1.08921 1.20545 1.00829 0.92763 0.98984 1.67884 1.09286 1.17307 1.18289 1.22996 1.08259 0.89712 1.06463 1.23664 0.90902 1.01423 0.90547 1.67496 1.17882 1.17032 1.26871 1.20506 0.93245 0.88081 0.91836 1.19605 1.12396 0.97011 1.13588 0.88792 1.27047 0.91169 1.07068 0.91799 1.69586 1.19995 1.40516 1.11857 0.83853 0.74867 0.74590 0.78739 1.20419 1.24169 1.20858 0.89158 0.88842 0.91512 0.73808 0.84091 0.81057 0.80933 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.58 10.06 71.24 0.72 -0.86 15 2 C -0.02 -0.58 7.39 25.30 0.19 -0.40 15 3 O -0.19 -6.54 10.54 2.48 0.03 -6.51 15 4 C -0.03 -1.11 12.03 66.91 0.80 -0.31 15 5 C -0.21 -8.69 9.17 23.63 0.22 -8.48 15 6 C -0.12 -5.53 5.48 -18.93 -0.10 -5.64 15 7 C 0.02 0.92 6.50 43.57 0.28 1.20 15 8 N -0.42 -18.99 10.26 -178.78 -1.83 -20.83 15 9 C -0.12 -4.73 11.17 84.87 0.95 -3.78 15 10 C 0.10 4.12 11.17 84.92 0.95 5.07 15 11 N -0.57 -28.44 5.14 -184.16 -0.95 -29.38 15 12 C 0.19 9.91 6.46 41.54 0.27 10.18 15 13 C -0.40 -21.46 9.00 23.32 0.21 -21.25 15 14 H 0.09 5.27 5.99 -2.91 -0.02 5.25 15 15 C 0.05 2.74 5.52 85.31 0.47 3.21 15 16 N -0.80 -40.84 13.92 21.86 0.30 -40.53 15 17 Si 1.05 48.17 25.43 68.60 1.74 49.92 15 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 19 H -0.31 -13.27 7.11 99.48 0.71 -12.56 15 20 H -0.28 -13.60 6.63 99.48 0.66 -12.94 15 21 H 0.09 2.56 8.14 -2.38 -0.02 2.54 15 22 H 0.09 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.07 2.31 7.94 -2.39 -0.02 2.29 15 24 H 0.25 5.16 8.06 -2.91 -0.02 5.13 15 25 H 0.14 5.84 7.97 -2.91 -0.02 5.82 15 26 H 0.17 5.47 8.06 -2.91 -0.02 5.45 15 27 H 0.17 5.66 8.06 -2.91 -0.02 5.64 15 28 H 0.31 13.97 8.29 -92.71 -0.77 13.20 15 Total: -1.00 -63.76 250.72 5.38 -58.38 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.14 Total: 10.01 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 4.95 Total: -21.05 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -2.48 Total: -90.75 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.03 Total: -6.51 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.74 Total: 49.92 kcal Total: -63.76 5.38 -58.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243058847.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.547 kcal (2) G-P(sol) polarization free energy of solvation -63.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds