Wall clock time and date at job start Sun Mar 29 2020 22:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34817 * 126.44632 * 2 1 4 4 N 1.30819 * 109.38503 * 180.26644 * 3 2 1 5 5 C 1.33378 * 109.74605 * 359.97438 * 4 3 2 6 6 C 1.37992 * 126.43979 * 180.31468 * 2 1 3 7 7 C 1.46829 * 126.92619 * 359.73471 * 6 2 1 8 8 N 1.33313 * 120.57637 * 114.88371 * 7 6 2 9 9 C 1.31801 * 120.01005 * 180.02562 * 8 7 6 10 10 C 1.39112 * 121.26083 * 359.97438 * 9 8 7 11 11 N 1.31497 * 121.19545 * 359.97438 * 10 9 8 12 12 C 1.34126 * 119.87473 * 359.73283 * 11 10 9 13 13 C 1.40524 * 120.59674 * 180.26170 * 12 11 10 14 14 H 1.07997 * 120.00055 * 171.53956 * 13 12 11 15 15 C 1.40108 * 120.00062 * 351.53224 * 13 12 11 16 16 N 1.30728 * 120.00551 * 164.86499 * 15 13 12 17 17 Si 1.86811 * 119.99801 * 344.86744 * 15 13 12 18 18 H 1.48492 * 109.47396 * 85.06484 * 17 15 13 19 19 H 1.48501 * 109.46567 * 205.06864 * 17 15 13 20 20 H 1.48499 * 109.46916 * 325.06214 * 17 15 13 21 21 H 1.09000 * 109.47310 * 265.19576 * 1 2 3 22 22 H 1.09001 * 109.47149 * 25.18862 * 1 2 3 23 23 H 1.09002 * 109.47559 * 145.19692 * 1 2 3 24 24 H 1.08001 * 125.30886 * 0.24130 * 3 2 1 25 25 H 1.08004 * 126.20133 * 179.97438 * 5 4 3 26 26 H 1.07999 * 119.36887 * 179.97438 * 9 8 7 27 27 H 1.07995 * 119.39795 * 179.97438 * 10 9 8 28 28 H 0.96997 * 120.00160 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2658 1.0845 0.0000 4 7 3.5164 0.7007 -0.0057 5 6 3.5789 -0.6316 -0.0091 6 6 2.2846 -1.1101 -0.0061 7 6 1.8643 -2.5170 -0.0084 8 7 2.1290 -3.3021 -1.0527 9 6 1.7461 -4.5632 -1.0432 10 6 1.0646 -5.1025 0.0431 11 7 0.7791 -4.3723 1.0987 12 6 1.1520 -3.0846 1.1411 13 6 0.8596 -2.2919 2.2639 14 1 1.2796 -1.3006 2.3492 15 6 0.0231 -2.7874 3.2727 16 7 -0.0180 -2.1953 4.4375 17 14 -1.0337 -4.2944 2.9533 18 1 -0.2372 -5.5211 3.2102 19 1 -2.2131 -4.2720 3.8554 20 1 -1.4910 -4.2879 1.5405 21 1 -0.3634 -0.0861 1.0240 22 1 -0.3633 0.9300 -0.4374 23 1 -0.3634 -0.8438 -0.5865 24 1 1.9277 2.1102 0.0037 25 1 4.4794 -1.2280 -0.0144 26 1 1.9656 -5.1899 -1.8949 27 1 0.7646 -6.1397 0.0188 28 1 -0.5969 -2.5386 5.1360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243062028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:55 Heat of formation + Delta-G solvation = 86.325198 kcal Electronic energy + Delta-G solvation = -15601.400262 eV Core-core repulsion = 13038.772489 eV Total energy + Delta-G solvation = -2562.627773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16459 -38.97823 -34.39192 -33.39841 -32.86745 -31.26156 -28.36845 -26.45084 -26.17809 -23.37072 -22.01556 -20.54246 -19.65364 -18.09319 -16.79403 -16.41607 -15.43107 -14.89695 -14.80008 -14.06983 -13.79591 -13.05861 -13.02542 -12.80272 -12.32053 -12.28551 -12.04140 -11.83132 -11.47996 -11.10400 -10.81129 -9.99090 -9.67751 -9.51576 -9.32182 -8.96242 -8.27955 -7.85292 -7.37896 -7.25803 -5.09501 1.90438 2.43528 2.78432 3.18496 3.25247 3.32663 3.45703 3.81813 4.06787 4.26063 5.15365 5.18849 5.19869 5.26877 5.54619 5.64270 5.82322 5.88712 5.96615 6.15604 6.33113 6.45400 6.57408 6.78043 7.00892 7.30885 7.42114 7.70004 7.83057 8.07146 8.11530 8.70195 8.78397 9.22754 9.54018 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.012361 C = 0.009324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.596627 B = 2264.686050 C = 3002.156726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.442 5.442 3 C 0.154 3.846 4 N -0.498 5.498 5 C -0.021 4.021 6 C 0.089 3.911 7 C 0.012 3.988 8 N -0.391 5.391 9 C -0.127 4.127 10 C 0.120 3.880 11 N -0.547 5.547 12 C 0.207 3.793 13 C -0.364 4.364 14 H 0.104 0.896 15 C 0.077 3.923 16 N -0.765 5.765 17 Si 0.999 3.001 18 H -0.268 1.268 19 H -0.322 1.322 20 H -0.266 1.266 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.196 0.804 25 H 0.164 0.836 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 0.974 -3.980 5.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.124 5.124 3 C -0.126 4.126 4 N -0.216 5.216 5 C -0.172 4.172 6 C -0.028 4.028 7 C -0.140 4.140 8 N -0.103 5.103 9 C -0.285 4.285 10 C -0.047 4.047 11 N -0.269 5.269 12 C 0.083 3.917 13 C -0.393 4.393 14 H 0.122 0.878 15 C -0.150 4.150 16 N -0.385 5.385 17 Si 0.832 3.168 18 H -0.194 1.194 19 H -0.254 1.254 20 H -0.192 1.192 21 H 0.104 0.896 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.213 0.787 25 H 0.181 0.819 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.777 1.608 -3.729 4.919 hybrid contribution -1.131 -1.196 0.083 1.648 sum -3.908 0.412 -3.646 5.361 Atomic orbital electron populations 1.21979 0.76894 1.03147 1.04418 1.45299 1.07373 1.06634 1.53130 1.24553 0.85932 0.92883 1.09222 1.69904 1.18885 1.12893 1.19921 1.22493 0.95177 0.90209 1.09327 1.19159 0.89806 0.85599 1.08221 1.19860 1.10397 0.90546 0.93225 1.67798 1.12800 1.04683 1.24970 1.22313 1.11823 0.93247 1.01134 1.23082 0.92735 0.98897 0.90000 1.67582 1.26951 1.06269 1.26050 1.20301 0.90277 0.88868 0.92254 1.19503 1.20122 1.01899 0.97791 0.87824 1.26617 0.96132 0.99259 0.92992 1.69617 1.28828 1.37235 1.02815 0.84550 0.75429 0.79281 0.77567 1.19434 1.25400 1.19164 0.89620 0.90282 0.90327 0.78703 0.81911 0.84721 0.84650 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.67 59.84 0.64 1.87 15 2 N -0.44 -8.45 3.06 -121.54 -0.37 -8.82 15 3 C 0.15 2.76 12.51 -90.31 -1.13 1.63 15 4 N -0.50 -10.26 11.20 -14.02 -0.16 -10.42 15 5 C -0.02 -0.47 11.94 -16.97 -0.20 -0.67 15 6 C 0.09 1.97 5.43 -81.71 -0.44 1.53 15 7 C 0.01 0.28 6.49 -80.35 -0.52 -0.24 15 8 N -0.39 -9.04 10.46 -7.96 -0.08 -9.13 15 9 C -0.13 -2.63 11.17 -17.24 -0.19 -2.82 15 10 C 0.12 2.51 11.17 -17.37 -0.19 2.32 15 11 N -0.55 -13.12 5.32 -9.52 -0.05 -13.17 15 12 C 0.21 5.10 6.43 -82.61 -0.53 4.57 15 13 C -0.36 -9.10 8.65 -38.02 -0.33 -9.43 15 14 H 0.10 2.72 7.16 -52.49 -0.38 2.35 15 15 C 0.08 1.88 5.52 -17.32 -0.10 1.78 15 16 N -0.77 -18.51 13.92 55.56 0.77 -17.74 15 17 Si 1.00 22.05 25.40 -169.99 -4.32 17.73 15 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 19 H -0.32 -6.80 7.11 56.52 0.40 -6.40 15 20 H -0.27 -6.06 6.75 56.52 0.38 -5.67 15 21 H 0.09 1.42 7.77 -51.93 -0.40 1.01 15 22 H 0.08 0.91 8.13 -51.93 -0.42 0.49 15 23 H 0.08 1.31 8.03 -51.93 -0.42 0.89 15 24 H 0.20 2.56 8.06 -52.49 -0.42 2.13 15 25 H 0.16 3.33 8.06 -52.48 -0.42 2.90 15 26 H 0.14 2.35 8.06 -52.49 -0.42 1.93 15 27 H 0.14 2.31 8.06 -52.49 -0.42 1.88 15 28 H 0.30 6.47 8.29 -40.82 -0.34 6.13 15 LS Contribution 251.91 15.07 3.80 3.80 Total: -1.00 -29.36 251.91 -5.88 -35.24 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.46 Total: 1.97 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.00 Total: 0.53 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.11 Total: -59.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.32 Total: 17.73 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.36 -5.88 -35.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243062028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.565 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds