Wall clock time and date at job start Sun Mar 29 2020 22:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34817 * 126.44632 * 2 1 4 4 N 1.30819 * 109.38503 * 180.26644 * 3 2 1 5 5 C 1.33378 * 109.74605 * 359.97438 * 4 3 2 6 6 C 1.37992 * 126.43979 * 180.31468 * 2 1 3 7 7 C 1.46829 * 126.92619 * 359.73471 * 6 2 1 8 8 N 1.33313 * 120.57637 * 114.88371 * 7 6 2 9 9 C 1.31801 * 120.01005 * 180.02562 * 8 7 6 10 10 C 1.39112 * 121.26083 * 359.97438 * 9 8 7 11 11 N 1.31497 * 121.19545 * 359.97438 * 10 9 8 12 12 C 1.34126 * 119.87473 * 359.73283 * 11 10 9 13 13 C 1.40524 * 120.59674 * 180.26170 * 12 11 10 14 14 H 1.07997 * 120.00055 * 171.53956 * 13 12 11 15 15 C 1.40108 * 120.00062 * 351.53224 * 13 12 11 16 16 N 1.30728 * 120.00551 * 164.86499 * 15 13 12 17 17 Si 1.86811 * 119.99801 * 344.86744 * 15 13 12 18 18 H 1.48492 * 109.47396 * 85.06484 * 17 15 13 19 19 H 1.48501 * 109.46567 * 205.06864 * 17 15 13 20 20 H 1.48499 * 109.46916 * 325.06214 * 17 15 13 21 21 H 1.09000 * 109.47310 * 265.19576 * 1 2 3 22 22 H 1.09001 * 109.47149 * 25.18862 * 1 2 3 23 23 H 1.09002 * 109.47559 * 145.19692 * 1 2 3 24 24 H 1.08001 * 125.30886 * 0.24130 * 3 2 1 25 25 H 1.08004 * 126.20133 * 179.97438 * 5 4 3 26 26 H 1.07999 * 119.36887 * 179.97438 * 9 8 7 27 27 H 1.07995 * 119.39795 * 179.97438 * 10 9 8 28 28 H 0.96997 * 120.00160 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2658 1.0845 0.0000 4 7 3.5164 0.7007 -0.0057 5 6 3.5789 -0.6316 -0.0091 6 6 2.2846 -1.1101 -0.0061 7 6 1.8643 -2.5170 -0.0084 8 7 2.1290 -3.3021 -1.0527 9 6 1.7461 -4.5632 -1.0432 10 6 1.0646 -5.1025 0.0431 11 7 0.7791 -4.3723 1.0987 12 6 1.1520 -3.0846 1.1411 13 6 0.8596 -2.2919 2.2639 14 1 1.2796 -1.3006 2.3492 15 6 0.0231 -2.7874 3.2727 16 7 -0.0180 -2.1953 4.4375 17 14 -1.0337 -4.2944 2.9533 18 1 -0.2372 -5.5211 3.2102 19 1 -2.2131 -4.2720 3.8554 20 1 -1.4910 -4.2879 1.5405 21 1 -0.3634 -0.0861 1.0240 22 1 -0.3633 0.9300 -0.4374 23 1 -0.3634 -0.8438 -0.5865 24 1 1.9277 2.1102 0.0037 25 1 4.4794 -1.2280 -0.0144 26 1 1.9656 -5.1899 -1.8949 27 1 0.7646 -6.1397 0.0188 28 1 -0.5969 -2.5386 5.1360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243062028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:55 Heat of formation + Delta-G solvation = 68.118760 kcal Electronic energy + Delta-G solvation = -15602.189753 eV Core-core repulsion = 13038.772489 eV Total energy + Delta-G solvation = -2563.417263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.68660 -40.72284 -36.18327 -34.88952 -34.60993 -32.97366 -30.01624 -27.94989 -27.78442 -25.06396 -23.77930 -22.05685 -21.21965 -19.91602 -18.32071 -18.15015 -17.17207 -16.46912 -16.27427 -15.73229 -15.42340 -14.78847 -14.65665 -14.35575 -13.85617 -13.77657 -13.58136 -13.34726 -13.22033 -12.85669 -12.62265 -11.76500 -11.48033 -11.20223 -10.97385 -10.46524 -9.98679 -9.58825 -9.13200 -8.94741 -6.91228 0.18147 0.67677 1.21143 1.42011 1.49823 1.58456 2.02131 2.25142 2.32282 2.48000 3.39552 3.57957 3.90689 3.92442 4.01753 4.11324 4.36540 4.41295 4.55843 4.68113 4.70014 4.85282 4.91298 5.07856 5.44852 5.61451 5.78034 5.82219 6.25171 6.30906 6.46478 7.00847 7.18232 7.47505 7.79500 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.012361 C = 0.009324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.596627 B = 2264.686050 C = 3002.156726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.446 5.446 3 C 0.174 3.826 4 N -0.524 5.524 5 C -0.037 4.037 6 C 0.058 3.942 7 C 0.000 4.000 8 N -0.411 5.411 9 C -0.114 4.114 10 C 0.113 3.887 11 N -0.566 5.566 12 C 0.197 3.803 13 C -0.385 4.385 14 H 0.080 0.920 15 C 0.055 3.945 16 N -0.792 5.792 17 Si 1.046 2.954 18 H -0.276 1.276 19 H -0.308 1.308 20 H -0.277 1.277 21 H 0.073 0.927 22 H 0.129 0.871 23 H 0.064 0.936 24 H 0.247 0.753 25 H 0.162 0.838 26 H 0.174 0.826 27 H 0.179 0.821 28 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 0.721 -5.020 6.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.127 5.127 3 C -0.107 4.107 4 N -0.242 5.242 5 C -0.187 4.187 6 C -0.059 4.059 7 C -0.150 4.150 8 N -0.123 5.123 9 C -0.274 4.274 10 C -0.053 4.053 11 N -0.288 5.288 12 C 0.073 3.927 13 C -0.415 4.415 14 H 0.098 0.902 15 C -0.170 4.170 16 N -0.413 5.413 17 Si 0.877 3.123 18 H -0.203 1.203 19 H -0.238 1.238 20 H -0.203 1.203 21 H 0.091 0.909 22 H 0.147 0.853 23 H 0.083 0.917 24 H 0.262 0.738 25 H 0.179 0.821 26 H 0.191 0.809 27 H 0.196 0.804 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.653 1.366 -4.761 6.155 hybrid contribution -0.802 -1.148 0.254 1.423 sum -4.455 0.218 -4.507 6.341 Atomic orbital electron populations 1.22138 0.75095 1.05188 1.03868 1.45502 1.08538 1.06049 1.52581 1.25564 0.85036 0.94409 1.05667 1.69905 1.20595 1.12198 1.21534 1.22615 0.95308 0.91049 1.09757 1.19193 0.90568 0.86009 1.10128 1.20027 1.10393 0.91481 0.93062 1.67888 1.13555 1.05790 1.25066 1.23041 1.09528 0.92772 1.02025 1.23782 0.91913 1.00519 0.89062 1.67601 1.27474 1.06192 1.27563 1.20426 0.90461 0.89363 0.92437 1.19312 1.21826 1.01401 0.99006 0.90187 1.27067 0.96501 1.00648 0.92754 1.69601 1.29972 1.38404 1.03351 0.83893 0.74688 0.76912 0.76849 1.20299 1.23847 1.20339 0.90856 0.85323 0.91736 0.73761 0.82076 0.80939 0.80392 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.67 127.77 1.36 3.74 15 2 N -0.45 -16.61 3.06 -538.43 -1.65 -18.26 15 3 C 0.17 5.87 12.51 180.24 2.26 8.13 15 4 N -0.52 -21.24 11.20 -198.27 -2.22 -23.46 15 5 C -0.04 -1.63 11.94 84.40 1.01 -0.62 15 6 C 0.06 2.60 5.43 40.36 0.22 2.82 15 7 C 0.00 0.01 6.49 43.37 0.28 0.29 15 8 N -0.41 -18.60 10.46 -179.10 -1.87 -20.47 15 9 C -0.11 -4.47 11.17 84.91 0.95 -3.52 15 10 C 0.11 4.44 11.17 84.95 0.95 5.39 15 11 N -0.57 -26.54 5.32 -184.04 -0.98 -27.51 15 12 C 0.20 9.79 6.43 41.55 0.27 10.06 15 13 C -0.39 -19.70 8.65 23.28 0.20 -19.50 15 14 H 0.08 4.37 7.16 -2.91 -0.02 4.35 15 15 C 0.05 2.68 5.52 85.31 0.47 3.15 15 16 N -0.79 -38.68 13.92 21.85 0.30 -38.37 15 17 Si 1.05 44.84 25.40 68.60 1.74 46.59 15 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 19 H -0.31 -12.26 7.11 99.48 0.71 -11.56 15 20 H -0.28 -12.24 6.75 99.48 0.67 -11.57 15 21 H 0.07 2.41 7.77 -2.39 -0.02 2.39 15 22 H 0.13 2.53 8.13 -2.39 -0.02 2.51 15 23 H 0.06 2.12 8.03 -2.39 -0.02 2.10 15 24 H 0.25 5.40 8.06 -2.91 -0.02 5.37 15 25 H 0.16 6.81 8.06 -2.91 -0.02 6.79 15 26 H 0.17 5.31 8.06 -2.91 -0.02 5.29 15 27 H 0.18 5.33 8.06 -2.91 -0.02 5.31 15 28 H 0.31 13.37 8.29 -92.71 -0.77 12.60 15 Total: -1.00 -63.79 251.91 4.43 -59.35 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.14 Total: 12.20 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 7.96 Total: 9.94 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -6.42 Total: -128.08 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.74 Total: 46.59 kcal Total: -63.79 4.43 -59.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243062028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.472 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds