Wall clock time and date at job start Sun Mar 29 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34916 * 126.46143 * 2 1 4 4 N 1.30679 * 109.04209 * 179.97438 * 3 2 1 5 5 C 1.33637 * 109.58594 * 359.76313 * 4 3 2 6 6 C 1.36290 * 107.85311 * 0.37836 * 5 4 3 7 7 C 1.47640 * 126.78329 * 179.89699 * 6 5 4 8 8 C 1.40330 * 120.01379 * 173.09371 * 7 6 5 9 9 N 1.32106 * 120.26970 * 179.97438 * 8 7 6 10 10 C 1.31939 * 120.31553 * 359.73540 * 9 8 7 11 11 C 1.40827 * 120.02310 * 0.52105 * 10 9 8 12 12 C 1.41275 * 120.13625 * 179.75406 * 11 10 9 13 13 H 1.07998 * 120.00188 * 155.14456 * 12 11 10 14 14 C 1.40024 * 119.99816 * 334.87200 * 12 11 10 15 15 N 1.30743 * 119.99556 * 341.15829 * 14 12 11 16 16 Si 1.86800 * 120.00022 * 161.16058 * 14 12 11 17 17 H 1.48497 * 109.46995 * 94.76798 * 16 14 12 18 18 H 1.48500 * 109.46672 * 214.77370 * 16 14 12 19 19 H 1.48503 * 109.46793 * 334.76976 * 16 14 12 20 20 N 1.32749 * 120.01469 * 353.07546 * 7 6 5 21 21 H 1.09003 * 109.47386 * 263.39956 * 1 2 3 22 22 H 1.09003 * 109.47298 * 23.39319 * 1 2 3 23 23 H 1.09001 * 109.47326 * 143.39566 * 1 2 3 24 24 H 1.07995 * 125.47506 * 359.92226 * 3 2 1 25 25 H 1.08004 * 126.07930 * 180.26263 * 5 4 3 26 26 H 1.07998 * 119.86916 * 0.02562 * 8 7 6 27 27 H 1.07999 * 119.98611 * 180.25655 * 10 9 8 28 28 H 0.97005 * 119.99582 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2667 1.0851 0.0000 4 7 3.5136 0.6939 0.0006 5 6 3.5641 -0.6415 0.0061 6 6 2.2835 -1.1081 0.0007 7 6 1.8577 -2.5218 0.0017 8 6 0.4995 -2.8457 0.1416 9 7 0.1128 -4.1089 0.1427 10 6 0.9992 -5.0768 0.0071 11 6 2.3661 -4.7666 -0.1288 12 6 3.3177 -5.8013 -0.2689 13 1 4.2601 -5.6055 -0.7589 14 6 3.0415 -7.0791 0.2326 15 7 2.1060 -7.2403 1.1315 16 14 4.0097 -8.5533 -0.3828 17 1 5.1446 -8.8192 0.5372 18 1 3.1222 -9.7430 -0.4312 19 1 4.5318 -8.2695 -1.7438 20 7 2.7595 -3.4870 -0.1301 21 1 -0.3634 -0.1181 1.0209 22 1 -0.3634 0.9432 -0.4080 23 1 -0.3634 -0.8250 -0.6128 24 1 1.9318 2.1118 -0.0012 25 1 4.4604 -1.2441 0.0119 26 1 -0.2328 -2.0591 0.2480 27 1 0.6767 -6.1075 0.0046 28 1 1.9143 -8.1256 1.4787 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243064655.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:57 Heat of formation + Delta-G solvation = 81.653606 kcal Electronic energy + Delta-G solvation = -15071.445161 eV Core-core repulsion = 12508.614813 eV Total energy + Delta-G solvation = -2562.830348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.00409 -40.82437 -36.17648 -35.10669 -34.65676 -32.62522 -29.76728 -28.41867 -27.68622 -24.94912 -24.08166 -21.98019 -21.46925 -19.59047 -18.04134 -17.88166 -17.38965 -16.79558 -16.66219 -15.89301 -14.99140 -14.81630 -14.66271 -14.35267 -13.98413 -13.79006 -13.43330 -13.14151 -12.77109 -12.52330 -12.05143 -11.90314 -11.83025 -11.27737 -11.11536 -10.58075 -10.23353 -9.41521 -8.94762 -8.93038 -6.73952 0.02832 0.72043 1.39057 1.42857 1.52767 1.58691 1.79188 2.15735 2.18132 2.58687 3.41334 3.62243 3.83554 3.90401 3.95005 4.12990 4.37182 4.38706 4.46574 4.70687 4.78728 4.89346 5.02582 5.19952 5.33825 5.58710 5.62824 6.10791 6.30937 6.44856 6.47690 7.01082 7.13887 7.60016 8.09113 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.045547 B = 0.006825 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.608366 B = 4101.451900 C = 4622.384116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.450 5.450 3 C 0.207 3.793 4 N -0.532 5.532 5 C 0.005 3.995 6 C 0.001 3.999 7 C 0.169 3.831 8 C -0.123 4.123 9 N -0.446 5.446 10 C -0.021 4.021 11 C 0.206 3.794 12 C -0.449 4.449 13 H 0.088 0.912 14 C 0.042 3.958 15 N -0.804 5.804 16 Si 1.003 2.997 17 H -0.259 1.259 18 H -0.256 1.256 19 H -0.256 1.256 20 N -0.544 5.544 21 H 0.091 0.909 22 H 0.138 0.862 23 H 0.084 0.916 24 H 0.262 0.738 25 H 0.160 0.840 26 H 0.178 0.822 27 H 0.151 0.849 28 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 7.810 -1.684 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.133 5.133 3 C -0.075 4.075 4 N -0.250 5.250 5 C -0.146 4.146 6 C -0.114 4.114 7 C 0.024 3.976 8 C -0.280 4.280 9 N -0.157 5.157 10 C -0.191 4.191 11 C 0.078 3.922 12 C -0.481 4.481 13 H 0.107 0.893 14 C -0.178 4.178 15 N -0.429 5.429 16 Si 0.821 3.179 17 H -0.183 1.183 18 H -0.180 1.180 19 H -0.179 1.179 20 N -0.265 5.265 21 H 0.110 0.890 22 H 0.156 0.844 23 H 0.102 0.898 24 H 0.278 0.722 25 H 0.177 0.823 26 H 0.194 0.806 27 H 0.169 0.831 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.618 8.200 -1.517 9.090 hybrid contribution -0.292 -1.347 0.073 1.380 sum -3.910 6.852 -1.443 8.020 Atomic orbital electron populations 1.22706 0.74149 1.06892 1.04993 1.45435 1.09026 1.05154 1.53638 1.25980 0.84590 0.94674 1.02240 1.70124 1.21417 1.11382 1.22102 1.22352 0.95874 0.91088 1.05302 1.19153 0.91554 0.86269 1.14473 1.19784 0.91614 0.90769 0.95450 1.23750 0.94697 0.94626 1.14911 1.67844 1.38671 1.00993 1.08206 1.23635 0.90535 0.98399 1.06522 1.19628 0.93520 0.89744 0.89267 1.19667 1.02891 0.93087 1.32471 0.89344 1.26999 0.95956 1.03047 0.91829 1.69761 1.26898 1.27654 1.18597 0.84882 0.78301 0.74858 0.79850 1.18328 1.17970 1.17947 1.68927 1.35932 1.00347 1.21283 0.89026 0.84425 0.89767 0.72211 0.82305 0.80583 0.83144 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 9.48 127.77 1.21 2.21 15 2 N -0.45 -13.07 3.17 -539.28 -1.71 -14.78 15 3 C 0.21 5.34 12.53 180.25 2.26 7.60 15 4 N -0.53 -18.72 11.22 -199.43 -2.24 -20.96 15 5 C 0.00 0.19 11.64 83.96 0.98 1.17 15 6 C 0.00 0.04 6.88 40.24 0.28 0.32 15 7 C 0.17 8.17 6.75 42.00 0.28 8.46 15 8 C -0.12 -5.62 10.22 85.16 0.87 -4.75 15 9 N -0.45 -22.81 10.47 -191.82 -2.01 -24.82 15 10 C -0.02 -1.16 9.88 85.31 0.84 -0.32 15 11 C 0.21 11.61 6.40 40.21 0.26 11.86 15 12 C -0.45 -24.02 9.27 23.45 0.22 -23.80 15 13 H 0.09 4.65 7.92 -2.91 -0.02 4.63 15 14 C 0.04 1.97 5.11 85.29 0.44 2.41 15 15 N -0.80 -39.58 11.05 21.84 0.24 -39.34 15 16 Si 1.00 35.42 29.60 68.60 2.03 37.45 15 17 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 18 H -0.26 -8.34 7.11 99.48 0.71 -7.63 15 19 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 20 N -0.54 -29.91 10.21 -177.91 -1.82 -31.73 15 21 H 0.09 1.56 8.04 -2.39 -0.02 1.55 15 22 H 0.14 1.25 8.13 -2.39 -0.02 1.23 15 23 H 0.08 1.88 5.76 -2.39 -0.01 1.87 15 24 H 0.26 3.33 8.06 -2.91 -0.02 3.30 15 25 H 0.16 6.83 8.06 -2.91 -0.02 6.80 15 26 H 0.18 6.34 4.14 -2.91 -0.01 6.33 15 27 H 0.15 8.22 6.23 -2.91 -0.02 8.21 15 28 H 0.30 13.05 8.29 -92.70 -0.77 12.28 15 Total: -1.00 -70.17 249.81 3.33 -66.84 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 1.20 Total: 22.19 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 7.63 Total: 5.16 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -7.53 Total: -131.63 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -70.17 3.33 -66.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243064655.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.491 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds