Wall clock time and date at job start Sun Mar 29 2020 22:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34941 * 126.44161 * 2 1 4 4 N 1.30822 * 109.36993 * 179.82418 * 3 2 1 5 5 C 1.33413 * 109.72654 * 0.44452 * 4 3 2 6 6 C 1.37891 * 126.43683 * 180.30653 * 2 1 3 7 7 C 1.47019 * 126.91252 * 0.02562 * 6 2 1 8 8 C 1.40848 * 120.82163 * 341.08094 * 7 6 2 9 9 N 1.31442 * 119.05356 * 179.76048 * 8 7 6 10 10 C 1.33791 * 120.86185 * 0.52812 * 9 8 7 11 11 C 1.40725 * 119.09710 * 179.69709 * 10 9 8 12 12 H 1.07994 * 120.00150 * 180.02562 * 11 10 9 13 13 C 1.40056 * 119.99707 * 0.02562 * 11 10 9 14 14 N 1.30712 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99767 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47429 * 59.99669 * 15 13 11 17 17 H 1.48498 * 109.47267 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.47084 * 300.00192 * 15 13 11 19 19 N 1.33791 * 121.80874 * 359.72253 * 10 9 8 20 20 C 1.31449 * 120.85965 * 359.97438 * 19 10 9 21 21 H 1.09000 * 109.46953 * 263.94671 * 1 2 3 22 22 H 1.08993 * 109.47282 * 143.94432 * 1 2 3 23 23 H 1.08993 * 109.46877 * 23.94227 * 1 2 3 24 24 H 1.07993 * 125.31412 * 359.97250 * 3 2 1 25 25 H 1.08004 * 126.19333 * 179.68942 * 5 4 3 26 26 H 1.08000 * 120.46943 * 0.02704 * 8 7 6 27 27 H 0.97006 * 119.99866 * 179.97438 * 14 13 11 28 28 H 1.07993 * 120.47296 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2666 1.0856 0.0000 4 7 3.5171 0.7015 0.0038 5 6 3.5790 -0.6312 -0.0034 6 6 2.2840 -1.1093 -0.0059 7 6 1.8627 -2.5179 -0.0140 8 6 0.5596 -2.8836 0.3757 9 7 0.2184 -4.1527 0.3507 10 6 1.0934 -5.0913 -0.0279 11 6 0.6906 -6.4397 -0.0346 12 1 1.3851 -7.2093 -0.3371 13 6 -0.6112 -6.7835 0.3511 14 7 -1.4517 -5.8520 0.7178 15 14 -1.1462 -8.5732 0.3415 16 1 -0.2812 -9.3534 1.2625 17 1 -2.5593 -8.6698 0.7877 18 1 -1.0235 -9.1191 -1.0342 19 7 2.3412 -4.7833 -0.3997 20 6 2.7541 -3.5354 -0.4064 21 1 -0.3633 -0.1084 1.0219 22 1 -0.3633 -0.8307 -0.6048 23 1 -0.3633 0.9392 -0.4170 24 1 1.9285 2.1112 -0.0004 25 1 4.4792 -1.2279 -0.0072 26 1 -0.1505 -2.1315 0.6863 27 1 -2.3535 -6.0901 0.9846 28 1 3.7627 -3.2938 -0.7074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243069828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:59 Heat of formation + Delta-G solvation = 103.905083 kcal Electronic energy + Delta-G solvation = -15046.192631 eV Core-core repulsion = 12484.327179 eV Total energy + Delta-G solvation = -2561.865452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.31007 -38.83994 -34.15584 -33.69184 -31.92044 -31.45359 -28.42420 -26.75381 -25.84934 -23.10555 -22.26605 -20.46607 -19.68257 -18.08016 -16.73892 -16.17313 -15.24814 -15.12306 -14.70460 -14.21519 -13.40609 -13.08800 -13.00429 -12.79989 -12.57308 -12.54017 -11.81443 -11.46282 -11.40505 -10.89679 -10.48769 -9.81897 -9.72310 -9.37181 -9.26630 -9.22071 -8.70198 -7.52171 -7.18767 -6.76250 -4.88311 1.87776 2.78963 2.88959 2.93058 2.95930 3.11430 3.25020 3.71447 3.75200 4.47650 4.95999 5.11642 5.33345 5.41476 5.53318 5.66287 5.70294 5.76334 5.98028 6.09240 6.16698 6.48746 6.75463 6.92172 7.22212 7.26336 7.43707 7.71191 7.93679 8.26508 8.34284 8.59472 8.91236 9.87796 10.05638 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.056773 B = 0.006412 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.071493 B = 4365.970569 C = 4819.358690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.463 5.463 3 C 0.138 3.862 4 N -0.489 5.489 5 C -0.064 4.064 6 C 0.097 3.903 7 C -0.304 4.304 8 C 0.167 3.833 9 N -0.505 5.505 10 C 0.378 3.622 11 C -0.374 4.374 12 H 0.097 0.903 13 C 0.060 3.940 14 N -0.697 5.697 15 Si 0.924 3.076 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.260 1.260 19 N -0.589 5.589 20 C 0.200 3.800 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.194 0.806 25 H 0.164 0.836 26 H 0.129 0.871 27 H 0.280 0.720 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 5.673 -0.342 5.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.147 5.147 3 C -0.141 4.141 4 N -0.207 5.207 5 C -0.213 4.213 6 C -0.020 4.020 7 C -0.316 4.316 8 C -0.011 4.011 9 N -0.221 5.221 10 C 0.146 3.854 11 C -0.408 4.408 12 H 0.116 0.884 13 C -0.168 4.168 14 N -0.318 5.318 15 Si 0.747 3.253 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.185 1.185 19 N -0.307 5.307 20 C 0.024 3.976 21 H 0.093 0.907 22 H 0.107 0.893 23 H 0.101 0.899 24 H 0.211 0.789 25 H 0.182 0.818 26 H 0.146 0.854 27 H 0.091 0.909 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.993 5.135 -0.256 5.514 hybrid contribution -0.824 -0.067 0.077 0.830 sum -2.817 5.068 -0.179 5.801 Atomic orbital electron populations 1.22133 0.77319 1.04230 1.03431 1.45226 1.07072 1.06902 1.55477 1.24514 0.85887 0.92794 1.10939 1.69856 1.18896 1.13129 1.18825 1.22428 0.95199 0.90320 1.13310 1.20060 0.89934 0.86743 1.05222 1.18944 0.99385 0.89499 1.23766 1.23229 0.91850 0.94746 0.91262 1.69344 1.34545 0.99018 1.19211 1.19919 0.83488 0.93999 0.88011 1.19407 0.96580 0.91062 1.33713 0.88448 1.26229 0.96356 1.00511 0.93744 1.70132 1.04713 1.34399 1.22521 0.86103 0.78264 0.80769 0.80207 1.18453 1.19895 1.18478 1.68698 1.18665 1.19254 1.24129 1.22623 0.97121 0.87924 0.89969 0.90679 0.89277 0.89910 0.78935 0.81835 0.85395 0.90880 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 9.41 59.85 0.56 1.46 15 2 N -0.46 -7.61 3.18 -121.45 -0.39 -8.00 15 3 C 0.14 2.17 12.52 -90.20 -1.13 1.04 15 4 N -0.49 -9.10 11.20 -13.97 -0.16 -9.25 15 5 C -0.06 -1.22 11.42 -16.94 -0.19 -1.41 15 6 C 0.10 1.89 6.81 -81.65 -0.56 1.33 15 7 C -0.30 -6.63 5.92 -104.37 -0.62 -7.25 15 8 C 0.17 3.81 10.00 -16.73 -0.17 3.64 15 9 N -0.51 -13.30 7.81 -12.36 -0.10 -13.40 15 10 C 0.38 10.24 7.35 -158.05 -1.16 9.08 15 11 C -0.37 -9.73 9.33 -37.96 -0.35 -10.09 15 12 H 0.10 2.41 7.85 -52.49 -0.41 2.00 15 13 C 0.06 1.43 5.50 -17.35 -0.10 1.34 15 14 N -0.70 -17.19 11.39 55.55 0.63 -16.56 15 15 Si 0.92 17.34 29.56 -169.99 -5.02 12.31 15 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 17 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 19 N -0.59 -15.13 10.33 -12.36 -0.13 -15.26 15 20 C 0.20 4.52 10.88 -16.73 -0.18 4.33 15 21 H 0.07 0.87 7.79 -51.93 -0.40 0.46 15 22 H 0.09 1.23 6.54 -51.93 -0.34 0.89 15 23 H 0.08 0.75 8.13 -51.93 -0.42 0.33 15 24 H 0.19 2.18 8.06 -52.49 -0.42 1.76 15 25 H 0.16 2.82 7.76 -52.48 -0.41 2.42 15 26 H 0.13 2.52 5.14 -52.49 -0.27 2.25 15 27 H 0.28 6.16 8.29 -40.82 -0.34 5.82 15 28 H 0.14 2.61 7.54 -52.49 -0.40 2.21 15 LS Contribution 250.98 15.07 3.78 3.78 Total: -1.00 -30.69 250.98 -7.48 -38.16 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.21 Total: 4.71 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -3.89 Total: 3.49 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.13 Total: -62.46 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.02 Total: 12.31 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.69 -7.48 -38.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243069828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.067 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds