Wall clock time and date at job start Sun Mar 29 2020 21:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29916 * 126.88637 * 2 1 4 4 O 1.20814 * 112.12859 * 180.02562 * 3 2 1 5 5 C 1.33884 * 111.95338 * 359.71965 * 4 3 2 6 6 C 1.37226 * 106.14373 * 0.44828 * 5 4 3 7 7 C 1.47745 * 128.22931 * 179.85835 * 6 5 4 8 8 C 1.39751 * 120.65988 * 64.92372 * 7 6 5 9 9 C 1.38324 * 118.47903 * 180.29137 * 8 7 6 10 10 C 1.39081 * 119.73698 * 359.72249 * 9 8 7 11 11 N 1.31268 * 121.35723 * 359.97438 * 10 9 8 12 12 C 1.33727 * 121.63364 * 0.02562 * 11 10 9 13 13 C 1.40745 * 119.94804 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99484 * 179.97438 * 13 12 11 15 15 C 1.40097 * 120.00095 * 0.02562 * 13 12 11 16 16 N 1.30736 * 120.00080 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00247 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99475 * 17 15 13 19 19 H 1.48498 * 109.47278 * 209.99905 * 17 15 13 20 20 H 1.48507 * 109.46754 * 329.99736 * 17 15 13 21 21 H 1.08997 * 109.47418 * 269.96985 * 1 2 3 22 22 H 1.08993 * 109.47524 * 29.97440 * 1 2 3 23 23 H 1.09006 * 109.47404 * 149.97308 * 1 2 3 24 24 H 1.07996 * 126.92831 * 180.33444 * 5 4 3 25 25 H 1.08005 * 120.75891 * 359.97438 * 8 7 6 26 26 H 1.07996 * 120.13095 * 179.74829 * 9 8 7 27 27 H 1.08002 * 119.32442 * 179.97438 * 10 9 8 28 28 H 0.96999 * 120.00165 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0391 0.0000 4 8 3.4550 0.7314 -0.0005 5 6 3.6227 -0.5969 0.0052 6 6 2.3628 -1.1406 -0.0007 7 6 1.9832 -2.5685 -0.0009 8 6 2.2868 -3.3868 1.0905 9 6 1.9158 -4.7184 1.0399 10 6 1.2513 -5.2073 -0.0799 11 7 0.9649 -4.4297 -1.0979 12 6 1.2980 -3.1346 -1.1067 13 6 0.9738 -2.3333 -2.2175 14 1 1.2420 -1.2872 -2.2252 15 6 0.3024 -2.8925 -3.3125 16 7 -0.0227 -4.1588 -3.3029 17 14 -0.1285 -1.8289 -4.7865 18 1 0.9861 -1.8669 -5.7670 19 1 -1.3666 -2.3445 -5.4240 20 1 -0.3475 -0.4296 -4.3400 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8901 -0.5134 23 1 -0.3634 -0.8898 -0.5143 24 1 4.5605 -1.1325 0.0111 25 1 2.8040 -2.9898 1.9516 26 1 2.1408 -5.3756 1.8668 27 1 0.9651 -6.2482 -0.1125 28 1 -0.4873 -4.5460 -4.0612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243677257.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:29 Heat of formation + Delta-G solvation = 85.305769 kcal Electronic energy + Delta-G solvation = -15519.350777 eV Core-core repulsion = 12924.386047 eV Total energy + Delta-G solvation = -2594.964730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.11615 -38.24010 -34.33167 -33.75744 -31.85603 -30.37438 -29.27617 -27.98997 -25.79858 -23.19170 -21.54692 -20.42345 -20.13452 -17.58672 -16.93032 -16.83769 -15.66891 -14.74435 -14.32496 -14.26961 -13.39040 -12.76926 -12.72056 -12.58314 -12.02921 -11.94063 -11.76610 -11.30588 -11.21247 -11.07725 -10.61431 -10.49446 -10.12768 -9.50451 -9.15577 -8.84780 -8.23598 -7.70607 -7.56565 -6.55396 -4.66317 2.13444 2.53298 2.78513 3.01816 3.05474 3.13324 3.14616 3.84495 3.95591 4.61518 4.91167 5.32346 5.68296 5.84252 5.99495 6.05927 6.11115 6.16424 6.25076 6.33133 6.47628 6.64383 6.75794 6.88797 6.98333 7.20846 7.45716 7.60496 7.90760 8.11539 8.49476 8.79438 8.97758 9.95786 10.14747 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.013399 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.214538 B = 2089.191759 C = 3169.398551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.028 3.972 3 N -0.385 5.385 4 O 0.084 5.916 5 C -0.097 4.097 6 C -0.079 4.079 7 C -0.211 4.211 8 C -0.031 4.031 9 C -0.321 4.321 10 C 0.134 3.866 11 N -0.481 5.481 12 C 0.272 3.728 13 C -0.414 4.414 14 H 0.086 0.914 15 C 0.069 3.931 16 N -0.706 5.706 17 Si 0.902 3.098 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.259 1.259 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.209 0.791 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 2.775 2.709 4.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 N -0.093 5.093 4 O 0.020 5.980 5 C -0.178 4.178 6 C -0.083 4.083 7 C -0.216 4.216 8 C -0.055 4.055 9 C -0.344 4.344 10 C -0.035 4.035 11 N -0.193 5.193 12 C 0.148 3.852 13 C -0.444 4.444 14 H 0.104 0.896 15 C -0.158 4.158 16 N -0.326 5.326 17 Si 0.726 3.274 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.183 1.183 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.225 0.775 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.137 0.863 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.089 3.620 1.804 4.188 hybrid contribution 0.343 -0.253 0.140 0.449 sum 1.432 3.367 1.945 4.144 Atomic orbital electron populations 1.20188 0.86445 1.04215 1.02332 1.23732 0.98747 0.88556 1.02085 1.73487 0.89700 1.24774 1.21371 1.84596 1.21213 1.23555 1.68591 1.26054 1.00723 0.83056 1.07978 1.19868 0.90754 0.94671 1.03050 1.18453 1.14660 0.89400 0.99100 1.20852 0.95881 0.93351 0.95409 1.21196 1.15054 0.96133 1.02024 1.22630 0.92734 0.98544 0.89581 1.68800 1.21692 1.04223 1.24544 1.18489 0.87604 0.88669 0.90390 1.19586 1.29530 0.96795 0.98456 0.89642 1.26123 0.94663 0.95157 0.99856 1.70119 1.22784 1.11591 1.28132 0.86388 0.78864 0.81210 0.80976 1.19190 1.19827 1.18273 0.91335 0.91616 0.88442 0.77490 0.88625 0.88586 0.86273 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.28 36.00 0.37 -1.00 15 2 C 0.03 0.57 6.44 -81.72 -0.53 0.04 15 3 N -0.39 -7.78 12.02 33.74 0.41 -7.37 15 4 O 0.08 1.57 11.16 17.61 0.20 1.76 15 5 C -0.10 -1.76 12.35 30.36 0.38 -1.38 15 6 C -0.08 -1.67 4.69 -104.70 -0.49 -2.16 15 7 C -0.21 -4.88 5.82 -104.06 -0.61 -5.49 15 8 C -0.03 -0.65 9.92 -38.98 -0.39 -1.04 15 9 C -0.32 -6.82 10.10 -39.24 -0.40 -7.21 15 10 C 0.13 3.08 11.17 -17.48 -0.20 2.89 15 11 N -0.48 -12.64 7.85 -10.90 -0.09 -12.72 15 12 C 0.27 7.01 6.48 -84.70 -0.55 6.46 15 13 C -0.41 -10.53 7.44 -37.94 -0.28 -10.81 15 14 H 0.09 2.14 6.07 -52.49 -0.32 1.82 15 15 C 0.07 1.68 5.50 -17.32 -0.10 1.59 15 16 N -0.71 -17.96 11.46 55.55 0.64 -17.32 15 17 Si 0.90 18.22 29.56 -169.99 -5.02 13.19 15 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 21 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.10 1.98 6.73 -51.93 -0.35 1.63 15 24 H 0.21 2.96 8.06 -52.49 -0.42 2.54 15 25 H 0.10 1.80 8.06 -52.48 -0.42 1.38 15 26 H 0.10 1.77 8.06 -52.49 -0.42 1.35 15 27 H 0.12 2.42 8.06 -52.49 -0.42 2.00 15 28 H 0.28 6.34 8.29 -40.82 -0.34 6.01 15 LS Contribution 253.15 15.07 3.81 3.81 Total: -1.00 -28.21 253.15 -5.18 -33.39 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -2.34 Total: 3.37 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -2.78 Total: -18.12 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.96 Total: -37.41 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.20 Total: 1.76 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.21 -5.18 -33.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243677257.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.694 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds