Wall clock time and date at job start Sun Mar 29 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29916 * 126.88637 * 2 1 4 4 O 1.20814 * 112.12859 * 180.02562 * 3 2 1 5 5 C 1.33884 * 111.95338 * 359.71965 * 4 3 2 6 6 C 1.37226 * 106.14373 * 0.44828 * 5 4 3 7 7 C 1.47745 * 128.22931 * 179.85835 * 6 5 4 8 8 C 1.39751 * 120.65988 * 64.92372 * 7 6 5 9 9 C 1.38324 * 118.47903 * 180.29137 * 8 7 6 10 10 C 1.39081 * 119.73698 * 359.72249 * 9 8 7 11 11 N 1.31268 * 121.35723 * 359.97438 * 10 9 8 12 12 C 1.33727 * 121.63364 * 0.02562 * 11 10 9 13 13 C 1.40745 * 119.94804 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99484 * 179.97438 * 13 12 11 15 15 C 1.40097 * 120.00095 * 0.02562 * 13 12 11 16 16 N 1.30736 * 120.00080 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00247 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99475 * 17 15 13 19 19 H 1.48498 * 109.47278 * 209.99905 * 17 15 13 20 20 H 1.48507 * 109.46754 * 329.99736 * 17 15 13 21 21 H 1.08997 * 109.47418 * 269.96985 * 1 2 3 22 22 H 1.08993 * 109.47524 * 29.97440 * 1 2 3 23 23 H 1.09006 * 109.47404 * 149.97308 * 1 2 3 24 24 H 1.07996 * 126.92831 * 180.33444 * 5 4 3 25 25 H 1.08005 * 120.75891 * 359.97438 * 8 7 6 26 26 H 1.07996 * 120.13095 * 179.74829 * 9 8 7 27 27 H 1.08002 * 119.32442 * 179.97438 * 10 9 8 28 28 H 0.96999 * 120.00165 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0391 0.0000 4 8 3.4550 0.7314 -0.0005 5 6 3.6227 -0.5969 0.0052 6 6 2.3628 -1.1406 -0.0007 7 6 1.9832 -2.5685 -0.0009 8 6 2.2868 -3.3868 1.0905 9 6 1.9158 -4.7184 1.0399 10 6 1.2513 -5.2073 -0.0799 11 7 0.9649 -4.4297 -1.0979 12 6 1.2980 -3.1346 -1.1067 13 6 0.9738 -2.3333 -2.2175 14 1 1.2420 -1.2872 -2.2252 15 6 0.3024 -2.8925 -3.3125 16 7 -0.0227 -4.1588 -3.3029 17 14 -0.1285 -1.8289 -4.7865 18 1 0.9861 -1.8669 -5.7670 19 1 -1.3666 -2.3445 -5.4240 20 1 -0.3475 -0.4296 -4.3400 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8901 -0.5134 23 1 -0.3634 -0.8898 -0.5143 24 1 4.5605 -1.1325 0.0111 25 1 2.8040 -2.9898 1.9516 26 1 2.1408 -5.3756 1.8668 27 1 0.9651 -6.2482 -0.1125 28 1 -0.4873 -4.5460 -4.0612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243677257.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:28 Heat of formation + Delta-G solvation = 69.333322 kcal Electronic energy + Delta-G solvation = -15520.043394 eV Core-core repulsion = 12924.386047 eV Total energy + Delta-G solvation = -2595.657347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.65448 -40.00657 -35.90987 -35.52983 -33.46551 -32.13507 -30.95552 -29.50082 -27.58661 -24.84403 -23.31679 -21.99884 -21.71632 -19.38715 -18.48233 -18.36730 -17.41620 -16.34050 -16.06224 -15.94468 -14.97481 -14.43945 -14.24823 -14.15991 -13.72424 -13.59607 -13.25541 -12.94273 -12.89157 -12.76557 -12.30947 -12.08593 -11.81488 -11.26074 -10.70553 -10.42910 -9.98003 -9.49894 -9.32011 -8.33205 -6.50790 0.59912 0.85235 1.09370 1.36830 1.47734 1.50841 1.52704 2.17758 2.52218 2.82192 3.38838 3.79494 3.96167 4.22178 4.36358 4.52901 4.59418 4.67295 4.72962 4.79649 4.89831 5.00607 5.12823 5.18557 5.35074 5.50138 5.71053 5.88230 6.15422 6.28783 6.69656 6.97330 7.47629 8.17407 8.39129 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.013399 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.214538 B = 2089.191759 C = 3169.398551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.016 3.984 3 N -0.397 5.397 4 O 0.092 5.908 5 C -0.068 4.068 6 C -0.117 4.117 7 C -0.211 4.211 8 C -0.037 4.037 9 C -0.309 4.309 10 C 0.111 3.889 11 N -0.519 5.519 12 C 0.245 3.755 13 C -0.440 4.440 14 H 0.080 0.920 15 C 0.030 3.970 16 N -0.745 5.745 17 Si 0.968 3.032 18 H -0.264 1.264 19 H -0.263 1.263 20 H -0.260 1.260 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.247 0.753 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.138 0.862 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 3.384 3.398 5.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.143 4.143 3 N -0.105 5.105 4 O 0.029 5.971 5 C -0.149 4.149 6 C -0.122 4.122 7 C -0.216 4.216 8 C -0.061 4.061 9 C -0.332 4.332 10 C -0.055 4.055 11 N -0.232 5.232 12 C 0.121 3.879 13 C -0.470 4.470 14 H 0.098 0.902 15 C -0.193 4.193 16 N -0.366 5.366 17 Si 0.789 3.211 18 H -0.189 1.189 19 H -0.187 1.187 20 H -0.184 1.184 21 H 0.104 0.896 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.263 0.737 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.012 4.218 2.517 5.308 hybrid contribution 0.157 -0.474 0.083 0.506 sum 2.168 3.744 2.600 5.048 Atomic orbital electron populations 1.20166 0.85746 1.03657 1.03302 1.23992 0.99572 0.88593 1.02097 1.73479 0.90090 1.24770 1.22136 1.84588 1.20676 1.23868 1.67941 1.26663 1.01152 0.82536 1.04548 1.19917 0.92265 0.94018 1.05987 1.18628 1.13666 0.90648 0.98695 1.21233 0.95752 0.93344 0.95807 1.21556 1.12956 0.96650 1.01997 1.23066 0.93235 0.99350 0.89849 1.68726 1.23100 1.05003 1.26341 1.18845 0.88512 0.88936 0.91586 1.19680 1.31164 0.96649 0.99512 0.90192 1.26860 0.94158 0.96186 1.02084 1.70193 1.24104 1.13081 1.29261 0.85408 0.78879 0.79260 0.77575 1.18884 1.18734 1.18391 0.89582 0.90247 0.90810 0.73672 0.85615 0.85301 0.84416 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.61 10.28 71.23 0.73 -1.88 15 2 C 0.02 0.63 6.44 43.93 0.28 0.91 15 3 N -0.40 -15.36 12.02 -48.21 -0.58 -15.94 15 4 O 0.09 3.23 11.16 73.23 0.82 4.04 15 5 C -0.07 -2.27 12.35 67.58 0.83 -1.44 15 6 C -0.12 -4.79 4.69 -19.91 -0.09 -4.88 15 7 C -0.21 -9.61 5.82 -19.50 -0.11 -9.73 15 8 C -0.04 -1.50 9.92 22.66 0.22 -1.28 15 9 C -0.31 -12.44 10.10 22.49 0.23 -12.21 15 10 C 0.11 5.08 11.17 84.98 0.95 6.03 15 11 N -0.52 -27.68 7.85 -188.41 -1.48 -29.16 15 12 C 0.24 12.81 6.48 40.37 0.26 13.07 15 13 C -0.44 -22.84 7.44 23.33 0.17 -22.66 15 14 H 0.08 4.09 6.07 -2.91 -0.02 4.07 15 15 C 0.03 1.50 5.50 85.31 0.47 1.97 15 16 N -0.74 -38.84 11.46 21.85 0.25 -38.59 15 17 Si 0.97 37.85 29.56 68.60 2.03 39.88 15 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 20 H -0.26 -10.06 7.11 99.48 0.71 -9.36 15 21 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 22 H 0.08 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.07 3.07 6.73 -2.38 -0.02 3.05 15 24 H 0.25 6.00 8.06 -2.91 -0.02 5.98 15 25 H 0.13 4.29 8.06 -2.91 -0.02 4.26 15 26 H 0.13 4.28 8.06 -2.91 -0.02 4.26 15 27 H 0.14 5.52 8.06 -2.91 -0.02 5.49 15 28 H 0.28 13.24 8.29 -92.71 -0.77 12.47 15 Total: -1.00 -60.85 253.15 6.17 -54.68 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.19 Total: 17.17 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 3.95 Total: -32.09 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.81 Total: -83.69 kcal Atomic # 8 Polarization: 3.23 SS G_CDS: 0.82 Total: 4.04 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -60.85 6.17 -54.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243677257.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.016 kcal (2) G-P(sol) polarization free energy of solvation -60.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds