Wall clock time and date at job start Sun Mar 29 2020 21:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30005 * 126.87415 * 2 1 4 4 O 1.20838 * 111.97534 * 179.97438 * 3 2 1 5 5 C 1.33942 * 111.86369 * 359.72223 * 4 3 2 6 6 C 1.36680 * 106.24364 * 0.44438 * 5 4 3 7 7 C 1.48361 * 128.17031 * 179.85733 * 6 5 4 8 8 C 1.40056 * 120.82271 * 129.69692 * 7 6 5 9 9 C 1.38449 * 119.42494 * 179.97438 * 8 7 6 10 10 N 1.31503 * 121.14857 * 0.02562 * 9 8 7 11 11 C 1.33661 * 121.79663 * 359.97438 * 10 9 8 12 12 C 1.41436 * 119.78426 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00780 * 173.66078 * 12 11 10 14 14 C 1.40035 * 119.99714 * 353.65086 * 12 11 10 15 15 N 1.30736 * 119.99791 * 6.28710 * 14 12 11 16 16 Si 1.86794 * 119.99973 * 186.28402 * 14 12 11 17 17 H 1.48502 * 109.46898 * 94.98984 * 16 14 12 18 18 H 1.48499 * 109.47181 * 214.98509 * 16 14 12 19 19 H 1.48497 * 109.47385 * 334.99020 * 16 14 12 20 20 C 1.39343 * 120.82048 * 309.67658 * 7 6 5 21 21 H 1.08999 * 109.47164 * 270.02744 * 1 2 3 22 22 H 1.09000 * 109.46696 * 30.02807 * 1 2 3 23 23 H 1.08997 * 109.46939 * 150.02221 * 1 2 3 24 24 H 1.08002 * 126.87596 * 180.29657 * 5 4 3 25 25 H 1.08001 * 120.28199 * 0.02562 * 8 7 6 26 26 H 1.08004 * 119.42378 * 179.97438 * 9 8 7 27 27 H 0.97006 * 120.00298 * 179.97438 * 15 14 12 28 28 H 1.07997 * 120.58565 * 359.74522 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2871 1.0400 0.0000 4 8 3.4549 0.7293 0.0005 5 6 3.6173 -0.6002 0.0069 6 6 2.3611 -1.1389 0.0005 7 6 1.9781 -2.5722 0.0008 8 6 1.0453 -3.0656 0.9217 9 6 0.7086 -4.4083 0.8957 10 7 1.2498 -5.2285 0.0218 11 6 2.1446 -4.8086 -0.8780 12 6 2.6994 -5.7276 -1.7988 13 1 3.3432 -5.3760 -2.5914 14 6 2.4141 -7.0937 -1.6826 15 7 1.5402 -7.5063 -0.8022 16 14 3.2821 -8.3262 -2.7856 17 1 4.4667 -8.8752 -2.0781 18 1 2.3499 -9.4321 -3.1218 19 1 3.7199 -7.6512 -4.0338 20 6 2.5373 -3.4607 -0.9154 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 4.5534 -1.1388 0.0132 25 1 0.5920 -2.4042 1.6452 26 1 -0.0104 -4.7888 1.6061 27 1 1.3422 -8.4526 -0.7219 28 1 3.2568 -3.1181 -1.6443 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243677559.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:34 Heat of formation + Delta-G solvation = 85.091870 kcal Electronic energy + Delta-G solvation = -14947.940895 eV Core-core repulsion = 12352.966890 eV Total energy + Delta-G solvation = -2594.974005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.53661 -38.23523 -34.85222 -33.56794 -32.17980 -30.07388 -29.60874 -28.35642 -25.74710 -23.51784 -21.60506 -20.67727 -20.50804 -17.80335 -17.24695 -16.71603 -15.58512 -14.71662 -14.47879 -14.11758 -13.80416 -13.12490 -12.97256 -12.67727 -12.26861 -12.21341 -12.02809 -11.29672 -11.25943 -11.01326 -10.81354 -10.54593 -10.13581 -9.60559 -9.45390 -9.22797 -7.98117 -7.74383 -7.66532 -6.49191 -4.61237 1.73431 2.28452 2.67737 3.04758 3.05140 3.08381 3.17138 3.57131 3.89210 4.48325 4.65711 4.92232 5.44731 5.56032 5.71402 5.76544 5.86146 5.91875 6.01962 6.12974 6.36754 6.45455 6.62043 6.77773 7.04122 7.21456 7.41928 7.58098 7.88518 8.14540 8.56294 8.57494 8.82038 10.01881 10.23739 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.043310 B = 0.006489 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.350399 B = 4313.936816 C = 4744.124495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.026 3.974 3 N -0.378 5.378 4 O 0.090 5.910 5 C -0.065 4.065 6 C -0.130 4.130 7 C 0.031 3.969 8 C -0.299 4.299 9 C 0.127 3.873 10 N -0.482 5.482 11 C 0.255 3.745 12 C -0.431 4.431 13 H 0.084 0.916 14 C 0.069 3.931 15 N -0.714 5.714 16 Si 0.908 3.092 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.261 1.261 20 C -0.253 4.253 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.217 0.783 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.274 0.726 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 6.294 0.797 6.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 N -0.085 5.085 4 O 0.027 5.973 5 C -0.147 4.147 6 C -0.134 4.134 7 C 0.024 3.976 8 C -0.322 4.322 9 C -0.039 4.039 10 N -0.195 5.195 11 C 0.131 3.869 12 C -0.462 4.462 13 H 0.103 0.897 14 C -0.156 4.156 15 N -0.335 5.335 16 Si 0.732 3.268 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.276 4.276 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.233 0.767 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.085 0.915 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.544 6.520 0.840 6.597 hybrid contribution 0.632 -0.540 -0.379 0.914 sum 1.176 5.980 0.461 6.112 Atomic orbital electron populations 1.20132 0.86053 1.03541 1.03139 1.23678 0.98921 0.88214 1.02483 1.73606 0.89610 1.24428 1.20847 1.84677 1.21265 1.23386 1.68011 1.26056 1.00819 0.82928 1.04849 1.20303 0.91706 0.95247 1.06177 1.17657 0.96680 0.87031 0.96249 1.21238 1.07935 0.97385 1.05672 1.22458 0.96285 0.89490 0.95662 1.68739 1.10656 1.35016 1.05089 1.18530 0.88662 0.89089 0.90623 1.19638 1.24736 0.90985 1.10849 0.89743 1.26068 0.94432 0.99657 0.95480 1.70128 1.21724 1.16074 1.25593 0.86308 0.79795 0.79896 0.80833 1.19417 1.20051 1.18473 1.21808 1.07270 0.95055 1.03490 0.90408 0.91128 0.89592 0.76673 0.88700 0.86143 0.91513 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.23 36.01 0.37 -0.66 15 2 C 0.03 0.46 7.36 -81.78 -0.60 -0.15 15 3 N -0.38 -6.60 12.04 33.68 0.41 -6.19 15 4 O 0.09 1.46 11.17 17.46 0.19 1.66 15 5 C -0.07 -1.03 12.30 30.17 0.37 -0.66 15 6 C -0.13 -2.43 5.80 -104.71 -0.61 -3.04 15 7 C 0.03 0.66 5.78 -104.64 -0.60 0.06 15 8 C -0.30 -6.42 9.72 -38.82 -0.38 -6.80 15 9 C 0.13 2.95 11.16 -17.61 -0.20 2.75 15 10 N -0.48 -12.89 7.88 -11.22 -0.09 -12.98 15 11 C 0.26 6.75 6.54 -85.03 -0.56 6.20 15 12 C -0.43 -11.18 9.14 -37.69 -0.34 -11.52 15 13 H 0.08 2.04 7.85 -52.49 -0.41 1.63 15 14 C 0.07 1.71 5.49 -17.34 -0.10 1.62 15 15 N -0.71 -18.55 11.49 55.55 0.64 -17.91 15 16 Si 0.91 18.06 29.56 -169.99 -5.03 13.04 15 17 H -0.27 -5.30 7.11 56.52 0.40 -4.89 15 18 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 19 H -0.26 -5.10 7.11 56.52 0.40 -4.69 15 20 C -0.25 -5.96 9.59 -38.34 -0.37 -6.33 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.22 2.66 8.06 -52.49 -0.42 2.24 15 25 H 0.09 1.83 8.06 -52.49 -0.42 1.40 15 26 H 0.12 2.48 8.06 -52.48 -0.42 2.06 15 27 H 0.27 6.42 8.29 -40.82 -0.34 6.08 15 28 H 0.10 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 259.38 15.07 3.91 3.91 Total: -1.00 -28.95 259.38 -5.48 -34.44 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -2.51 Total: 2.57 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -3.01 Total: -18.54 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.96 Total: -37.08 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.19 Total: 1.66 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.95 -5.48 -34.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243677559.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.530 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds