Wall clock time and date at job start Sun Mar 29 2020 21:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30005 * 126.87415 * 2 1 4 4 O 1.20838 * 111.97534 * 179.97438 * 3 2 1 5 5 C 1.33942 * 111.86369 * 359.72223 * 4 3 2 6 6 C 1.36680 * 106.24364 * 0.44438 * 5 4 3 7 7 C 1.48361 * 128.17031 * 179.85733 * 6 5 4 8 8 C 1.40056 * 120.82271 * 129.69692 * 7 6 5 9 9 C 1.38449 * 119.42494 * 179.97438 * 8 7 6 10 10 N 1.31503 * 121.14857 * 0.02562 * 9 8 7 11 11 C 1.33661 * 121.79663 * 359.97438 * 10 9 8 12 12 C 1.41436 * 119.78426 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00780 * 173.66078 * 12 11 10 14 14 C 1.40035 * 119.99714 * 353.65086 * 12 11 10 15 15 N 1.30736 * 119.99791 * 6.28710 * 14 12 11 16 16 Si 1.86794 * 119.99973 * 186.28402 * 14 12 11 17 17 H 1.48502 * 109.46898 * 94.98984 * 16 14 12 18 18 H 1.48499 * 109.47181 * 214.98509 * 16 14 12 19 19 H 1.48497 * 109.47385 * 334.99020 * 16 14 12 20 20 C 1.39343 * 120.82048 * 309.67658 * 7 6 5 21 21 H 1.08999 * 109.47164 * 270.02744 * 1 2 3 22 22 H 1.09000 * 109.46696 * 30.02807 * 1 2 3 23 23 H 1.08997 * 109.46939 * 150.02221 * 1 2 3 24 24 H 1.08002 * 126.87596 * 180.29657 * 5 4 3 25 25 H 1.08001 * 120.28199 * 0.02562 * 8 7 6 26 26 H 1.08004 * 119.42378 * 179.97438 * 9 8 7 27 27 H 0.97006 * 120.00298 * 179.97438 * 15 14 12 28 28 H 1.07997 * 120.58565 * 359.74522 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2871 1.0400 0.0000 4 8 3.4549 0.7293 0.0005 5 6 3.6173 -0.6002 0.0069 6 6 2.3611 -1.1389 0.0005 7 6 1.9781 -2.5722 0.0008 8 6 1.0453 -3.0656 0.9217 9 6 0.7086 -4.4083 0.8957 10 7 1.2498 -5.2285 0.0218 11 6 2.1446 -4.8086 -0.8780 12 6 2.6994 -5.7276 -1.7988 13 1 3.3432 -5.3760 -2.5914 14 6 2.4141 -7.0937 -1.6826 15 7 1.5402 -7.5063 -0.8022 16 14 3.2821 -8.3262 -2.7856 17 1 4.4667 -8.8752 -2.0781 18 1 2.3499 -9.4321 -3.1218 19 1 3.7199 -7.6512 -4.0338 20 6 2.5373 -3.4607 -0.9154 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 4.5534 -1.1388 0.0132 25 1 0.5920 -2.4042 1.6452 26 1 -0.0104 -4.7888 1.6061 27 1 1.3422 -8.4526 -0.7219 28 1 3.2568 -3.1181 -1.6443 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243677559.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:34 Heat of formation + Delta-G solvation = 68.616662 kcal Electronic energy + Delta-G solvation = -14948.655313 eV Core-core repulsion = 12352.966890 eV Total energy + Delta-G solvation = -2595.688424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.87272 -40.03611 -36.31658 -35.30312 -33.66788 -31.91008 -31.19568 -29.58994 -27.59623 -25.08570 -23.32617 -22.24799 -21.94033 -19.44279 -18.58001 -18.24496 -17.29384 -16.33880 -16.15854 -15.88832 -15.26146 -14.47969 -14.38060 -14.14941 -13.92056 -13.74972 -13.38966 -12.91248 -12.88683 -12.72924 -12.27890 -12.22712 -11.79420 -11.24853 -10.96512 -10.68679 -9.68229 -9.57519 -9.51855 -8.30782 -6.52520 0.36396 0.81102 0.89013 1.42602 1.46459 1.56592 1.58767 2.23623 2.29944 2.83653 3.19212 3.63971 3.89611 4.01329 4.19735 4.32107 4.56214 4.62131 4.66513 4.77193 4.83590 4.90392 4.98596 5.17848 5.22271 5.44701 5.61719 5.82088 6.09291 6.27434 6.71869 6.93960 7.27127 8.17858 8.44970 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.043310 B = 0.006489 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.350399 B = 4313.936816 C = 4744.124495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.024 3.976 3 N -0.390 5.390 4 O 0.096 5.904 5 C -0.034 4.034 6 C -0.171 4.171 7 C 0.042 3.958 8 C -0.289 4.289 9 C 0.109 3.891 10 N -0.520 5.520 11 C 0.226 3.774 12 C -0.468 4.468 13 H 0.090 0.910 14 C 0.026 3.974 15 N -0.756 5.756 16 Si 0.986 3.014 17 H -0.264 1.264 18 H -0.269 1.269 19 H -0.255 1.255 20 C -0.269 4.269 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.250 0.750 25 H 0.121 0.879 26 H 0.141 0.859 27 H 0.279 0.721 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 7.161 0.741 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.135 4.135 3 N -0.098 5.098 4 O 0.034 5.966 5 C -0.116 4.116 6 C -0.175 4.175 7 C 0.035 3.965 8 C -0.312 4.312 9 C -0.055 4.055 10 N -0.234 5.234 11 C 0.101 3.899 12 C -0.499 4.499 13 H 0.108 0.892 14 C -0.196 4.196 15 N -0.378 5.378 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.194 1.194 19 H -0.178 1.178 20 C -0.292 4.292 21 H 0.113 0.887 22 H 0.106 0.894 23 H 0.094 0.906 24 H 0.266 0.734 25 H 0.139 0.861 26 H 0.158 0.842 27 H 0.090 0.910 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.198 7.421 0.798 7.559 hybrid contribution 0.408 -0.639 -0.272 0.805 sum 1.606 6.782 0.527 6.989 Atomic orbital electron populations 1.20231 0.84445 1.03915 1.04332 1.24043 1.00133 0.87648 1.01660 1.73614 0.89914 1.24510 1.21734 1.84684 1.20938 1.23447 1.67544 1.26619 1.01171 0.82602 1.01162 1.20200 0.93416 0.94052 1.09837 1.17799 0.95494 0.88363 0.94862 1.21514 1.07167 0.96949 1.05523 1.22891 0.96624 0.90348 0.95637 1.68681 1.11759 1.36635 1.06275 1.18944 0.89205 0.90586 0.91158 1.19993 1.26018 0.92199 1.11723 0.89225 1.26967 0.94768 1.01154 0.96715 1.70220 1.23315 1.16810 1.27434 0.85139 0.78481 0.77035 0.78726 1.18852 1.19369 1.17816 1.21912 1.08183 0.94569 1.04515 0.88744 0.89379 0.90580 0.73425 0.86127 0.84168 0.90996 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 10.23 71.24 0.73 -1.20 15 2 C 0.02 0.79 7.36 43.85 0.32 1.11 15 3 N -0.39 -12.65 12.04 -48.49 -0.58 -13.24 15 4 O 0.10 2.84 11.17 72.66 0.81 3.65 15 5 C -0.03 -0.98 12.30 67.46 0.83 -0.15 15 6 C -0.17 -6.01 5.80 -19.92 -0.12 -6.13 15 7 C 0.04 1.76 5.78 -19.87 -0.11 1.64 15 8 C -0.29 -12.06 9.72 22.76 0.22 -11.84 15 9 C 0.11 5.08 11.16 84.79 0.95 6.03 15 10 N -0.52 -28.39 7.88 -189.40 -1.49 -29.88 15 11 C 0.23 12.20 6.54 40.19 0.26 12.46 15 12 C -0.47 -24.82 9.14 23.49 0.21 -24.61 15 13 H 0.09 4.43 7.85 -2.91 -0.02 4.40 15 14 C 0.03 1.29 5.49 85.29 0.47 1.76 15 15 N -0.76 -40.19 11.49 21.84 0.25 -39.94 15 16 Si 0.99 37.25 29.56 68.60 2.03 39.28 15 17 H -0.26 -9.64 7.11 99.48 0.71 -8.94 15 18 H -0.27 -9.76 7.11 99.48 0.71 -9.06 15 19 H -0.25 -9.23 7.11 99.48 0.71 -8.53 15 20 C -0.27 -12.69 9.59 23.07 0.22 -12.47 15 21 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.25 5.23 8.06 -2.91 -0.02 5.21 15 25 H 0.12 4.36 8.06 -2.91 -0.02 4.33 15 26 H 0.14 5.74 8.06 -2.91 -0.02 5.72 15 27 H 0.28 13.39 8.29 -92.70 -0.77 12.63 15 28 H 0.11 4.81 8.06 -2.91 -0.02 4.78 15 Total: -1.00 -62.77 259.38 6.18 -56.60 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.18 Total: 16.91 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.99 Total: -33.39 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -1.82 Total: -83.06 kcal Atomic # 8 Polarization: 2.84 SS G_CDS: 0.81 Total: 3.65 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -62.77 6.18 -56.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243677559.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.214 kcal (2) G-P(sol) polarization free energy of solvation -62.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds