Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29931 * 126.88429 * 2 1 4 4 O 1.20813 * 112.11625 * 180.02562 * 3 2 1 5 5 C 1.33908 * 111.94148 * 359.74520 * 4 3 2 6 6 C 1.37182 * 106.15266 * 0.40765 * 5 4 3 7 7 C 1.47800 * 128.22501 * 179.89152 * 6 5 4 8 8 C 1.39392 * 120.78629 * 64.90085 * 7 6 5 9 9 N 1.31645 * 120.64163 * 180.28754 * 8 7 6 10 10 C 1.32241 * 122.51164 * 359.74071 * 9 8 7 11 11 C 1.36416 * 121.53117 * 359.97438 * 10 9 8 12 12 C 1.41153 * 119.11401 * 0.02562 * 11 10 9 13 13 C 1.40866 * 121.11290 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00422 * 150.68941 * 13 12 11 15 15 C 1.40131 * 120.00095 * 330.96921 * 13 12 11 16 16 N 1.30717 * 119.99799 * 161.47717 * 15 13 12 17 17 Si 1.86800 * 119.99800 * 341.46984 * 15 13 12 18 18 H 1.48499 * 109.46875 * 95.40380 * 17 15 13 19 19 H 1.48495 * 109.47161 * 215.40460 * 17 15 13 20 20 H 1.48499 * 109.47322 * 335.40640 * 17 15 13 21 21 H 1.09005 * 109.47358 * 269.96100 * 1 2 3 22 22 H 1.09002 * 109.46801 * 29.95225 * 1 2 3 23 23 H 1.08995 * 109.47428 * 149.95369 * 1 2 3 24 24 H 1.08000 * 126.91993 * 180.31554 * 5 4 3 25 25 H 1.07992 * 119.67796 * 0.02562 * 8 7 6 26 26 H 1.08001 * 119.23310 * 179.97438 * 10 9 8 27 27 H 1.08001 * 120.44991 * 180.02562 * 11 10 9 28 28 H 0.97003 * 119.99989 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0393 0.0000 4 8 3.4550 0.7313 -0.0005 5 6 3.6222 -0.5973 0.0046 6 6 2.3626 -1.1405 -0.0007 7 6 1.9826 -2.5688 -0.0005 8 6 2.2848 -3.3874 1.0865 9 7 1.9500 -4.6605 1.0813 10 6 1.3158 -5.2245 0.0671 11 6 0.9684 -4.5112 -1.0426 12 6 1.2953 -3.1395 -1.1074 13 6 0.9572 -2.3632 -2.2332 14 1 0.7646 -1.3063 -2.1223 15 6 0.8652 -2.9633 -3.4962 16 7 0.2172 -2.3627 -4.4595 17 14 1.6688 -4.6214 -3.8031 18 1 0.6646 -5.6998 -3.6188 19 1 2.1952 -4.6671 -5.1909 20 1 2.7854 -4.8156 -2.8435 21 1 -0.3634 -0.0007 1.0277 22 1 -0.3633 0.8904 -0.5131 23 1 -0.3634 -0.8895 -0.5145 24 1 4.5599 -1.1331 0.0101 25 1 2.8024 -2.9741 1.9395 26 1 1.0670 -6.2742 0.1187 27 1 0.4503 -4.9894 -1.8606 28 1 0.1532 -2.7782 -5.3337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243678020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = 76.844611 kcal Electronic energy + Delta-G solvation = -15541.781742 eV Core-core repulsion = 12946.450108 eV Total energy + Delta-G solvation = -2595.331633 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.16060 -38.69824 -34.62784 -33.98209 -31.94196 -31.24290 -29.24323 -28.05152 -26.07760 -23.33977 -21.83066 -20.44784 -20.29649 -17.90027 -16.99651 -16.91296 -15.90914 -14.89725 -14.66216 -14.35749 -13.77708 -13.12089 -12.92365 -12.69530 -12.56187 -12.31968 -11.86893 -11.67235 -11.09645 -11.06132 -10.75845 -10.62443 -9.95261 -9.55263 -9.27200 -8.96751 -8.36736 -8.12373 -7.80511 -7.23549 -4.86881 2.01227 2.30319 2.50121 2.94532 2.98317 3.08034 3.15370 3.76409 3.90947 4.38213 4.85051 5.13949 5.31936 5.46902 5.80500 5.95843 5.99973 6.07434 6.13310 6.27911 6.34993 6.47058 6.55033 6.79363 6.80549 6.99516 7.07017 7.48473 7.78928 8.06933 8.30748 8.47956 8.94044 9.25370 9.75855 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.012198 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.749453 B = 2294.917530 C = 2964.405686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.030 3.970 3 N -0.382 5.382 4 O 0.087 5.913 5 C -0.088 4.088 6 C -0.086 4.086 7 C -0.193 4.193 8 C 0.141 3.859 9 N -0.579 5.579 10 C 0.116 3.884 11 C -0.282 4.282 12 C 0.124 3.876 13 C -0.426 4.426 14 H 0.102 0.898 15 C 0.086 3.914 16 N -0.784 5.784 17 Si 0.914 3.086 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.245 1.245 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.210 0.790 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -0.318 3.292 4.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 N -0.090 5.090 4 O 0.023 5.977 5 C -0.169 4.169 6 C -0.090 4.090 7 C -0.199 4.199 8 C -0.015 4.015 9 N -0.293 5.293 10 C -0.034 4.034 11 C -0.304 4.304 12 C 0.116 3.884 13 C -0.455 4.455 14 H 0.120 0.880 15 C -0.137 4.137 16 N -0.406 5.406 17 Si 0.740 3.260 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.168 1.168 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.113 0.887 24 H 0.227 0.773 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.127 0.873 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.476 0.521 3.744 4.519 hybrid contribution -0.020 -1.043 -1.229 1.612 sum 2.456 -0.522 2.514 3.554 Atomic orbital electron populations 1.20208 0.86456 1.04275 1.02341 1.23698 0.98714 0.88501 1.02022 1.73501 0.89646 1.24677 1.21170 1.84618 1.21243 1.23454 1.68394 1.26031 1.00581 0.83124 1.07152 1.19738 0.91015 0.94292 1.03995 1.18597 1.11338 0.90289 0.99630 1.22202 0.95036 0.89265 0.94993 1.67430 1.20092 1.12398 1.29424 1.21672 0.93664 0.98315 0.89713 1.21622 1.11374 0.96459 1.00963 1.17777 0.87245 0.91116 0.92270 1.19588 1.37111 0.98462 0.90297 0.88012 1.26307 0.92052 0.99546 0.95809 1.69631 1.27832 1.39134 1.04031 0.86260 0.81512 0.80619 0.77653 1.19145 1.21395 1.16765 0.91213 0.91383 0.88689 0.77321 0.85553 0.85804 0.87308 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.96 36.00 0.36 -1.02 15 2 C 0.03 0.60 6.58 -81.73 -0.54 0.06 15 3 N -0.38 -7.67 12.02 33.74 0.41 -7.26 15 4 O 0.09 1.59 11.16 17.55 0.20 1.79 15 5 C -0.09 -1.54 12.35 30.35 0.37 -1.16 15 6 C -0.09 -1.75 5.00 -104.70 -0.52 -2.27 15 7 C -0.19 -4.21 5.83 -104.02 -0.61 -4.82 15 8 C 0.14 2.93 10.96 -17.20 -0.19 2.74 15 9 N -0.58 -12.58 10.32 -13.36 -0.14 -12.72 15 10 C 0.12 2.46 11.08 -18.03 -0.20 2.26 15 11 C -0.28 -6.36 7.23 -39.13 -0.28 -6.64 15 12 C 0.12 2.93 5.06 -106.26 -0.54 2.39 15 13 C -0.43 -10.59 8.38 -37.88 -0.32 -10.91 15 14 H 0.10 2.67 5.52 -52.49 -0.29 2.38 15 15 C 0.09 2.09 5.42 -17.32 -0.09 1.99 15 16 N -0.78 -19.37 13.92 55.56 0.77 -18.59 15 17 Si 0.91 19.38 24.54 -169.99 -4.17 15.21 15 18 H -0.27 -5.40 6.70 56.52 0.38 -5.02 15 19 H -0.29 -5.89 7.11 56.52 0.40 -5.49 15 20 H -0.24 -5.39 6.86 56.52 0.39 -5.00 15 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 23 H 0.09 1.90 6.43 -51.93 -0.33 1.56 15 24 H 0.21 2.82 8.06 -52.49 -0.42 2.39 15 25 H 0.13 2.29 8.06 -52.49 -0.42 1.86 15 26 H 0.12 2.25 8.06 -52.49 -0.42 1.83 15 27 H 0.11 2.39 4.76 -52.49 -0.25 2.14 15 28 H 0.29 6.47 8.29 -40.82 -0.34 6.13 15 LS Contribution 245.93 15.07 3.71 3.71 Total: -1.00 -27.10 245.93 -3.94 -31.04 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.16 Total: 4.21 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -2.55 Total: -17.37 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 1.04 Total: -38.58 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.20 Total: 1.79 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.10 -3.94 -31.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243678020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.885 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds