Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29931 * 126.88429 * 2 1 4 4 O 1.20813 * 112.11625 * 180.02562 * 3 2 1 5 5 C 1.33908 * 111.94148 * 359.74520 * 4 3 2 6 6 C 1.37182 * 106.15266 * 0.40765 * 5 4 3 7 7 C 1.47800 * 128.22501 * 179.89152 * 6 5 4 8 8 C 1.39392 * 120.78629 * 64.90085 * 7 6 5 9 9 N 1.31645 * 120.64163 * 180.28754 * 8 7 6 10 10 C 1.32241 * 122.51164 * 359.74071 * 9 8 7 11 11 C 1.36416 * 121.53117 * 359.97438 * 10 9 8 12 12 C 1.41153 * 119.11401 * 0.02562 * 11 10 9 13 13 C 1.40866 * 121.11290 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00422 * 150.68941 * 13 12 11 15 15 C 1.40131 * 120.00095 * 330.96921 * 13 12 11 16 16 N 1.30717 * 119.99799 * 161.47717 * 15 13 12 17 17 Si 1.86800 * 119.99800 * 341.46984 * 15 13 12 18 18 H 1.48499 * 109.46875 * 95.40380 * 17 15 13 19 19 H 1.48495 * 109.47161 * 215.40460 * 17 15 13 20 20 H 1.48499 * 109.47322 * 335.40640 * 17 15 13 21 21 H 1.09005 * 109.47358 * 269.96100 * 1 2 3 22 22 H 1.09002 * 109.46801 * 29.95225 * 1 2 3 23 23 H 1.08995 * 109.47428 * 149.95369 * 1 2 3 24 24 H 1.08000 * 126.91993 * 180.31554 * 5 4 3 25 25 H 1.07992 * 119.67796 * 0.02562 * 8 7 6 26 26 H 1.08001 * 119.23310 * 179.97438 * 10 9 8 27 27 H 1.08001 * 120.44991 * 180.02562 * 11 10 9 28 28 H 0.97003 * 119.99989 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0393 0.0000 4 8 3.4550 0.7313 -0.0005 5 6 3.6222 -0.5973 0.0046 6 6 2.3626 -1.1405 -0.0007 7 6 1.9826 -2.5688 -0.0005 8 6 2.2848 -3.3874 1.0865 9 7 1.9500 -4.6605 1.0813 10 6 1.3158 -5.2245 0.0671 11 6 0.9684 -4.5112 -1.0426 12 6 1.2953 -3.1395 -1.1074 13 6 0.9572 -2.3632 -2.2332 14 1 0.7646 -1.3063 -2.1223 15 6 0.8652 -2.9633 -3.4962 16 7 0.2172 -2.3627 -4.4595 17 14 1.6688 -4.6214 -3.8031 18 1 0.6646 -5.6998 -3.6188 19 1 2.1952 -4.6671 -5.1909 20 1 2.7854 -4.8156 -2.8435 21 1 -0.3634 -0.0007 1.0277 22 1 -0.3633 0.8904 -0.5131 23 1 -0.3634 -0.8895 -0.5145 24 1 4.5599 -1.1331 0.0101 25 1 2.8024 -2.9741 1.9395 26 1 1.0670 -6.2742 0.1187 27 1 0.4503 -4.9894 -1.8606 28 1 0.1532 -2.7782 -5.3337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243678020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = 60.292665 kcal Electronic energy + Delta-G solvation = -15542.499488 eV Core-core repulsion = 12946.450108 eV Total energy + Delta-G solvation = -2596.049379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.68163 -40.39462 -36.26285 -35.65467 -33.54089 -32.95147 -30.85012 -29.56401 -27.83104 -24.95303 -23.54322 -22.00349 -21.84785 -19.67180 -18.53385 -18.43765 -17.59369 -16.57107 -16.26691 -16.05949 -15.37834 -14.77330 -14.57279 -14.18083 -14.15855 -13.87914 -13.46944 -13.27320 -12.83439 -12.72621 -12.44383 -12.17734 -11.69210 -11.28349 -10.81140 -10.49115 -10.11978 -9.81479 -9.44124 -9.02338 -6.69973 0.42975 0.75282 0.76716 1.25402 1.36319 1.46014 1.47275 2.05340 2.51235 2.61477 3.32280 3.46226 3.84430 3.90339 4.26293 4.38544 4.49014 4.62122 4.64315 4.68699 4.78833 4.81718 5.05879 5.10909 5.22581 5.36479 5.37235 5.73825 6.06437 6.25094 6.54163 6.65941 7.46388 7.56002 8.02610 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.012198 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.749453 B = 2294.917530 C = 2964.405686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.015 3.985 3 N -0.398 5.398 4 O 0.093 5.907 5 C -0.059 4.059 6 C -0.123 4.123 7 C -0.190 4.190 8 C 0.139 3.861 9 N -0.581 5.581 10 C 0.115 3.885 11 C -0.295 4.295 12 C 0.112 3.888 13 C -0.452 4.452 14 H 0.076 0.924 15 C 0.054 3.946 16 N -0.822 5.822 17 Si 0.962 3.038 18 H -0.251 1.251 19 H -0.278 1.278 20 H -0.256 1.256 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.252 0.748 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.112 0.888 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 -1.430 4.321 5.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.143 4.143 3 N -0.106 5.106 4 O 0.030 5.970 5 C -0.140 4.140 6 C -0.128 4.128 7 C -0.195 4.195 8 C -0.016 4.016 9 N -0.296 5.296 10 C -0.035 4.035 11 C -0.317 4.317 12 C 0.104 3.896 13 C -0.481 4.481 14 H 0.094 0.906 15 C -0.165 4.165 16 N -0.447 5.447 17 Si 0.785 3.215 18 H -0.176 1.176 19 H -0.204 1.204 20 H -0.180 1.180 21 H 0.109 0.891 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.268 0.732 25 H 0.174 0.826 26 H 0.174 0.826 27 H 0.129 0.871 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.678 -0.575 4.776 6.055 hybrid contribution -0.338 -0.664 -1.404 1.589 sum 3.340 -1.239 3.372 4.905 Atomic orbital electron populations 1.20173 0.85899 1.03415 1.03399 1.23978 0.99510 0.88743 1.02089 1.73491 0.90142 1.24858 1.22122 1.84602 1.20618 1.24000 1.67776 1.26720 1.01155 0.82480 1.03665 1.19831 0.92366 0.93810 1.06784 1.18781 1.10408 0.91164 0.99192 1.22649 0.94649 0.88932 0.95418 1.67534 1.19761 1.12830 1.29433 1.22151 0.92708 0.99774 0.88869 1.21763 1.11904 0.96235 1.01831 1.17988 0.87357 0.91806 0.92489 1.19519 1.39525 0.97577 0.91514 0.90595 1.26913 0.92139 1.02076 0.95399 1.69654 1.29456 1.40774 1.04789 0.85531 0.80542 0.77890 0.77520 1.17605 1.20414 1.17994 0.89103 0.90781 0.90939 0.73192 0.82637 0.82575 0.87070 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.64 9.96 71.23 0.71 -1.93 15 2 C 0.02 0.61 6.58 43.92 0.29 0.89 15 3 N -0.40 -15.63 12.02 -48.22 -0.58 -16.21 15 4 O 0.09 3.25 11.16 73.00 0.81 4.07 15 5 C -0.06 -1.92 12.35 67.57 0.83 -1.08 15 6 C -0.12 -4.86 5.00 -19.91 -0.10 -4.96 15 7 C -0.19 -8.05 5.83 -19.47 -0.11 -8.16 15 8 C 0.14 5.41 10.96 85.00 0.93 6.34 15 9 N -0.58 -23.57 10.32 -196.18 -2.02 -25.60 15 10 C 0.12 4.58 11.08 84.21 0.93 5.52 15 11 C -0.30 -12.89 7.23 22.56 0.16 -12.73 15 12 C 0.11 5.22 5.06 -20.92 -0.11 5.12 15 13 C -0.45 -22.94 8.38 23.37 0.20 -22.74 15 14 H 0.08 4.16 5.52 -2.91 -0.02 4.14 15 15 C 0.05 2.65 5.42 85.32 0.46 3.11 15 16 N -0.82 -41.54 13.92 21.86 0.30 -41.23 15 17 Si 0.96 39.29 24.54 68.60 1.68 40.97 15 18 H -0.25 -9.56 6.70 99.48 0.67 -8.89 15 19 H -0.28 -10.78 7.11 99.48 0.71 -10.07 15 20 H -0.26 -10.83 6.86 99.48 0.68 -10.15 15 21 H 0.09 2.87 8.14 -2.38 -0.02 2.85 15 22 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.07 3.00 6.43 -2.39 -0.02 2.99 15 24 H 0.25 5.69 8.06 -2.91 -0.02 5.66 15 25 H 0.16 5.06 8.06 -2.91 -0.02 5.04 15 26 H 0.16 5.10 8.06 -2.91 -0.02 5.08 15 27 H 0.11 4.74 4.76 -2.91 -0.01 4.72 15 28 H 0.30 13.51 8.29 -92.71 -0.77 12.74 15 Total: -1.00 -57.49 245.93 5.53 -51.96 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.13 Total: 16.66 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.20 Total: -30.63 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -2.30 Total: -83.03 kcal Atomic # 8 Polarization: 3.25 SS G_CDS: 0.81 Total: 4.07 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.68 Total: 40.97 kcal Total: -57.49 5.53 -51.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243678020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.253 kcal (2) G-P(sol) polarization free energy of solvation -57.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds