Wall clock time and date at job start Sun Mar 29 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30021 * 126.85926 * 2 1 4 4 O 1.20851 * 111.95209 * 180.02562 * 3 2 1 5 5 C 1.33997 * 111.83723 * 0.02562 * 4 3 2 6 6 C 1.36598 * 106.25416 * 359.97438 * 5 4 3 7 7 C 1.48470 * 128.16063 * 179.97438 * 6 5 4 8 8 C 1.39701 * 120.41098 * 129.74541 * 7 6 5 9 9 N 1.31920 * 121.15105 * 179.76906 * 8 7 6 10 10 C 1.31513 * 122.11559 * 0.49228 * 9 8 7 11 11 C 1.40778 * 120.66282 * 359.77949 * 10 9 8 12 12 C 1.41434 * 120.60653 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99784 * 335.79477 * 12 11 10 14 14 C 1.39931 * 119.99753 * 155.79085 * 12 11 10 15 15 N 1.30826 * 120.00547 * 342.94323 * 14 12 11 16 16 Si 1.86805 * 119.99732 * 162.94438 * 14 12 11 17 17 H 1.48500 * 109.47343 * 59.99970 * 16 14 12 18 18 H 1.48498 * 109.46949 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47080 * 300.00012 * 16 14 12 20 20 C 1.39105 * 120.40349 * 310.02135 * 7 6 5 21 21 H 1.08997 * 109.47256 * 269.97476 * 1 2 3 22 22 H 1.09000 * 109.47178 * 29.97779 * 1 2 3 23 23 H 1.09001 * 109.46910 * 149.97630 * 1 2 3 24 24 H 1.08007 * 126.87528 * 180.02562 * 5 4 3 25 25 H 1.08006 * 119.42173 * 359.97438 * 8 7 6 26 26 H 1.07997 * 119.66832 * 179.74610 * 10 9 8 27 27 H 0.97000 * 120.00639 * 180.02562 * 15 14 12 28 28 H 1.07997 * 120.95624 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2870 1.0403 0.0000 4 8 3.4548 0.7294 -0.0005 5 6 3.6165 -0.6008 -0.0015 6 6 2.3608 -1.1385 -0.0010 7 6 1.9771 -2.5728 -0.0021 8 6 1.0510 -3.0579 0.9245 9 7 0.6963 -4.3284 0.9337 10 6 1.1971 -5.2003 0.0860 11 6 2.1410 -4.8022 -0.8796 12 6 2.6792 -5.7410 -1.7903 13 1 2.6962 -6.7907 -1.5369 14 6 3.1897 -5.3097 -3.0197 15 7 2.8806 -4.1233 -3.4765 16 14 4.3126 -6.4279 -4.0088 17 1 3.5934 -7.6842 -4.3399 18 1 4.7135 -5.7423 -5.2636 19 1 5.5229 -6.7463 -3.2096 20 6 2.5398 -3.4513 -0.9223 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.5524 -1.1399 -0.0017 25 1 0.6155 -2.3801 1.6438 26 1 0.8815 -6.2321 0.1314 27 1 3.2342 -3.8245 -4.3289 28 1 3.2614 -3.1079 -1.6487 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243678089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:32 Heat of formation + Delta-G solvation = 73.051607 kcal Electronic energy + Delta-G solvation = -15130.902715 eV Core-core repulsion = 12535.406605 eV Total energy + Delta-G solvation = -2595.496110 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.42213 -38.40619 -34.69846 -34.11042 -32.15809 -30.44612 -29.31889 -28.24106 -25.70510 -23.35040 -21.86409 -20.67626 -20.29309 -17.68255 -17.13763 -16.74819 -15.69345 -15.25529 -14.73493 -14.29307 -13.50810 -13.02647 -12.95481 -12.66788 -12.32060 -12.08718 -11.76459 -11.61272 -11.37805 -11.16636 -10.94201 -10.67454 -10.10515 -9.60698 -9.45359 -9.23850 -8.30121 -8.02495 -7.61863 -6.96217 -4.61179 1.81101 2.27252 2.68690 2.95981 2.97865 3.02844 3.10883 3.67476 3.76990 4.44976 4.58847 5.01090 5.43844 5.54625 5.74297 5.82395 5.87779 5.93365 6.00705 6.21248 6.41159 6.56447 6.62552 6.83573 6.96420 7.07626 7.53192 7.72136 7.78200 8.28322 8.55080 8.57250 8.67586 9.49795 9.95123 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.008285 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.499565 B = 3378.601423 C = 4022.078916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.025 3.975 3 N -0.378 5.378 4 O 0.089 5.911 5 C -0.069 4.069 6 C -0.120 4.120 7 C -0.061 4.061 8 C -0.020 4.020 9 N -0.468 5.468 10 C -0.016 4.016 11 C 0.063 3.937 12 C -0.449 4.449 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.789 5.789 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.116 4.116 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.215 0.785 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.285 0.715 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 3.687 1.499 4.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 N -0.085 5.085 4 O 0.025 5.975 5 C -0.150 4.150 6 C -0.125 4.125 7 C -0.064 4.064 8 C -0.177 4.177 9 N -0.175 5.175 10 C -0.177 4.177 11 C 0.059 3.941 12 C -0.479 4.479 13 H 0.103 0.897 14 C -0.144 4.144 15 N -0.413 5.413 16 Si 0.737 3.263 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.142 4.142 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.103 0.897 24 H 0.231 0.769 25 H 0.137 0.863 26 H 0.146 0.854 27 H 0.096 0.904 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.970 4.894 1.896 5.338 hybrid contribution 1.151 -1.040 -1.288 2.016 sum 2.121 3.855 0.609 4.442 Atomic orbital electron populations 1.20129 0.86159 1.03569 1.03036 1.23648 0.98845 0.88296 1.02614 1.73602 0.89625 1.24441 1.20858 1.84681 1.21256 1.23384 1.68130 1.25995 1.00808 0.82921 1.05228 1.20153 0.91611 0.95007 1.05721 1.18560 1.00653 0.88309 0.98865 1.21665 1.02415 0.92174 1.01478 1.66965 1.24358 1.02751 1.23380 1.22563 0.99294 0.97930 0.97944 1.18448 0.90366 0.92833 0.92445 1.19540 1.33697 0.95396 0.99249 0.89719 1.25981 0.94898 0.95616 0.97945 1.69772 1.34276 1.18680 1.18563 0.86273 0.80783 0.80632 0.78621 1.18743 1.20188 1.18608 1.21744 1.00936 0.93269 0.98216 0.90438 0.91129 0.89675 0.76885 0.86311 0.85449 0.90366 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.21 36.01 0.37 -0.73 15 2 C 0.02 0.46 7.36 -81.79 -0.60 -0.14 15 3 N -0.38 -6.93 12.04 33.67 0.41 -6.52 15 4 O 0.09 1.53 11.17 17.31 0.19 1.72 15 5 C -0.07 -1.15 12.29 30.14 0.37 -0.78 15 6 C -0.12 -2.35 5.77 -104.71 -0.60 -2.95 15 7 C -0.06 -1.35 5.76 -104.81 -0.60 -1.96 15 8 C -0.02 -0.44 10.74 -16.97 -0.18 -0.62 15 9 N -0.47 -11.16 10.32 -12.28 -0.13 -11.28 15 10 C -0.02 -0.39 10.96 -16.73 -0.18 -0.57 15 11 C 0.06 1.59 5.59 -106.71 -0.60 1.00 15 12 C -0.45 -11.02 9.08 -37.73 -0.34 -11.37 15 13 H 0.08 1.97 7.90 -52.48 -0.41 1.55 15 14 C 0.07 1.74 5.18 -17.35 -0.09 1.65 15 15 N -0.79 -19.09 10.93 55.55 0.61 -18.49 15 16 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 15 17 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 18 H -0.28 -5.17 7.11 56.52 0.40 -4.77 15 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 20 C -0.12 -2.81 8.52 -38.25 -0.33 -3.14 15 21 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 24 H 0.21 2.88 8.06 -52.48 -0.42 2.46 15 25 H 0.12 2.40 8.06 -52.48 -0.42 1.98 15 26 H 0.13 2.84 8.06 -52.49 -0.42 2.41 15 27 H 0.29 6.33 8.30 -40.82 -0.34 5.99 15 28 H 0.13 3.19 6.22 -52.49 -0.33 2.86 15 LS Contribution 257.86 15.07 3.89 3.89 Total: -1.00 -27.17 257.86 -5.27 -32.44 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.41 Total: 5.54 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.79 Total: -19.62 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.89 Total: -36.29 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.17 -5.27 -32.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243678089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.494 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds