Wall clock time and date at job start Sun Mar 29 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30021 * 126.85926 * 2 1 4 4 O 1.20851 * 111.95209 * 180.02562 * 3 2 1 5 5 C 1.33997 * 111.83723 * 0.02562 * 4 3 2 6 6 C 1.36598 * 106.25416 * 359.97438 * 5 4 3 7 7 C 1.48470 * 128.16063 * 179.97438 * 6 5 4 8 8 C 1.39701 * 120.41098 * 129.74541 * 7 6 5 9 9 N 1.31920 * 121.15105 * 179.76906 * 8 7 6 10 10 C 1.31513 * 122.11559 * 0.49228 * 9 8 7 11 11 C 1.40778 * 120.66282 * 359.77949 * 10 9 8 12 12 C 1.41434 * 120.60653 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99784 * 335.79477 * 12 11 10 14 14 C 1.39931 * 119.99753 * 155.79085 * 12 11 10 15 15 N 1.30826 * 120.00547 * 342.94323 * 14 12 11 16 16 Si 1.86805 * 119.99732 * 162.94438 * 14 12 11 17 17 H 1.48500 * 109.47343 * 59.99970 * 16 14 12 18 18 H 1.48498 * 109.46949 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47080 * 300.00012 * 16 14 12 20 20 C 1.39105 * 120.40349 * 310.02135 * 7 6 5 21 21 H 1.08997 * 109.47256 * 269.97476 * 1 2 3 22 22 H 1.09000 * 109.47178 * 29.97779 * 1 2 3 23 23 H 1.09001 * 109.46910 * 149.97630 * 1 2 3 24 24 H 1.08007 * 126.87528 * 180.02562 * 5 4 3 25 25 H 1.08006 * 119.42173 * 359.97438 * 8 7 6 26 26 H 1.07997 * 119.66832 * 179.74610 * 10 9 8 27 27 H 0.97000 * 120.00639 * 180.02562 * 15 14 12 28 28 H 1.07997 * 120.95624 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2870 1.0403 0.0000 4 8 3.4548 0.7294 -0.0005 5 6 3.6165 -0.6008 -0.0015 6 6 2.3608 -1.1385 -0.0010 7 6 1.9771 -2.5728 -0.0021 8 6 1.0510 -3.0579 0.9245 9 7 0.6963 -4.3284 0.9337 10 6 1.1971 -5.2003 0.0860 11 6 2.1410 -4.8022 -0.8796 12 6 2.6792 -5.7410 -1.7903 13 1 2.6962 -6.7907 -1.5369 14 6 3.1897 -5.3097 -3.0197 15 7 2.8806 -4.1233 -3.4765 16 14 4.3126 -6.4279 -4.0088 17 1 3.5934 -7.6842 -4.3399 18 1 4.7135 -5.7423 -5.2636 19 1 5.5229 -6.7463 -3.2096 20 6 2.5398 -3.4513 -0.9223 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.5524 -1.1399 -0.0017 25 1 0.6155 -2.3801 1.6438 26 1 0.8815 -6.2321 0.1314 27 1 3.2342 -3.8245 -4.3289 28 1 3.2614 -3.1079 -1.6487 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243678089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:32 Heat of formation + Delta-G solvation = 58.165108 kcal Electronic energy + Delta-G solvation = -15131.548242 eV Core-core repulsion = 12535.406605 eV Total energy + Delta-G solvation = -2596.141637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.83773 -40.19918 -36.22236 -35.83075 -33.67600 -32.26078 -30.93976 -29.55302 -27.52352 -24.97023 -23.62777 -22.18653 -21.83411 -19.37651 -18.55244 -18.27196 -17.46070 -16.99704 -16.37628 -15.88791 -15.03785 -14.51561 -14.31191 -14.17043 -13.92703 -13.55954 -13.40866 -13.27690 -13.15081 -12.74977 -12.43961 -12.17784 -11.79793 -11.24216 -11.05074 -10.67139 -10.13725 -9.83286 -9.35818 -8.71765 -6.47308 0.29803 0.71943 0.95965 1.41183 1.41588 1.51921 1.56510 2.18503 2.31332 2.68768 3.20953 3.57866 3.73635 3.99869 4.19841 4.31372 4.54784 4.59886 4.64394 4.76466 4.78658 4.92131 5.06538 5.14973 5.20588 5.29291 5.73346 5.88300 5.96822 6.45116 6.73040 6.74367 7.28623 7.66147 8.21856 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.008285 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.499565 B = 3378.601423 C = 4022.078916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.022 3.978 3 N -0.389 5.389 4 O 0.095 5.905 5 C -0.041 4.041 6 C -0.160 4.160 7 C -0.048 4.048 8 C -0.024 4.024 9 N -0.478 5.478 10 C -0.035 4.035 11 C 0.040 3.960 12 C -0.478 4.478 13 H 0.089 0.911 14 C 0.039 3.961 15 N -0.818 5.818 16 Si 0.985 3.015 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.257 1.257 20 C -0.134 4.134 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.246 0.754 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.292 0.708 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 4.078 1.279 4.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 N -0.097 5.097 4 O 0.033 5.967 5 C -0.122 4.122 6 C -0.165 4.165 7 C -0.051 4.051 8 C -0.182 4.182 9 N -0.185 5.185 10 C -0.196 4.196 11 C 0.036 3.964 12 C -0.507 4.507 13 H 0.107 0.893 14 C -0.178 4.178 15 N -0.442 5.442 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.181 1.181 20 C -0.160 4.160 21 H 0.115 0.885 22 H 0.106 0.894 23 H 0.090 0.910 24 H 0.262 0.738 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.103 0.897 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.725 5.295 1.689 5.820 hybrid contribution 0.898 -1.071 -1.176 1.826 sum 2.623 4.224 0.514 4.999 Atomic orbital electron populations 1.20221 0.84527 1.03757 1.04368 1.24017 1.00073 0.87735 1.01819 1.73603 0.89902 1.24488 1.21697 1.84684 1.20961 1.23382 1.67699 1.26525 1.01169 0.82663 1.01877 1.20116 0.93263 0.94054 1.09076 1.18634 0.99480 0.89488 0.97520 1.22059 1.02338 0.92022 1.01780 1.66980 1.24591 1.03423 1.23480 1.22739 0.99813 0.98623 0.98401 1.18765 0.90895 0.93643 0.93088 1.19829 1.35015 0.95676 1.00164 0.89338 1.26799 0.95547 0.96965 0.98444 1.69823 1.34947 1.20229 1.19249 0.85183 0.78577 0.78564 0.77100 1.18288 1.19412 1.18126 1.21732 1.01782 0.93564 0.98944 0.88493 0.89395 0.90968 0.73839 0.84151 0.84538 0.89686 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 10.21 71.24 0.73 -1.35 15 2 C 0.02 0.79 7.36 43.84 0.32 1.11 15 3 N -0.39 -13.52 12.04 -48.52 -0.58 -14.10 15 4 O 0.09 3.05 11.17 72.13 0.81 3.85 15 5 C -0.04 -1.30 12.29 67.44 0.83 -0.48 15 6 C -0.16 -6.06 5.77 -19.92 -0.11 -6.18 15 7 C -0.05 -2.13 5.76 -19.99 -0.12 -2.25 15 8 C -0.02 -1.07 10.74 85.03 0.91 -0.15 15 9 N -0.48 -22.77 10.32 -192.77 -1.99 -24.76 15 10 C -0.04 -1.72 10.96 85.36 0.94 -0.79 15 11 C 0.04 2.06 5.59 -21.21 -0.12 1.94 15 12 C -0.48 -23.67 9.08 23.47 0.21 -23.46 15 13 H 0.09 4.15 7.90 -2.91 -0.02 4.13 15 14 C 0.04 1.81 5.18 85.25 0.44 2.25 15 15 N -0.82 -39.63 10.93 21.82 0.24 -39.39 15 16 Si 0.99 34.89 29.59 68.60 2.03 36.92 15 17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 18 H -0.27 -9.14 7.11 99.48 0.71 -8.43 15 19 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 20 C -0.13 -6.57 8.52 23.14 0.20 -6.37 15 21 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 22 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.25 5.94 8.06 -2.91 -0.02 5.91 15 25 H 0.14 5.47 8.06 -2.91 -0.02 5.45 15 26 H 0.14 6.20 8.06 -2.91 -0.02 6.18 15 27 H 0.29 12.86 8.30 -92.71 -0.77 12.09 15 28 H 0.12 6.00 6.22 -2.91 -0.02 5.99 15 Total: -1.00 -57.30 257.86 5.91 -51.39 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.18 Total: 21.81 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 4.23 Total: -35.72 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.34 Total: -78.26 kcal Atomic # 8 Polarization: 3.05 SS G_CDS: 0.81 Total: 3.85 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -57.30 5.91 -51.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243678089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.552 kcal (2) G-P(sol) polarization free energy of solvation -57.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds