Wall clock time and date at job start Sun Mar 29 2020 22:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48505 * 109.46941 * 275.38200 * 3 2 1 5 5 H 1.48502 * 109.47187 * 35.37802 * 3 2 1 6 6 H 1.48502 * 109.47255 * 155.38410 * 3 2 1 7 7 C 1.40099 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 342.00655 * 7 2 1 9 9 C 1.40759 * 120.00486 * 162.00156 * 7 2 1 10 10 C 1.40873 * 120.61870 * 329.87212 * 9 7 2 11 11 C 1.36308 * 119.95720 * 180.27109 * 10 9 7 12 12 C 1.38816 * 121.34347 * 359.97438 * 11 10 9 13 13 C 1.37883 * 121.29771 * 0.02562 * 12 11 10 14 14 C 1.39549 * 119.91935 * 359.97438 * 13 12 11 15 15 C 1.47142 * 120.63954 * 179.97438 * 14 13 12 16 16 C 1.32261 * 118.72318 * 105.02272 * 15 14 13 17 17 C 1.50423 * 122.22356 * 180.37341 * 16 15 14 18 18 C 1.53120 * 109.57277 * 343.31185 * 17 16 15 19 19 O 1.43266 * 108.46505 * 48.16926 * 18 17 16 20 20 C 1.43028 * 112.96406 * 290.95494 * 19 18 17 21 21 H 0.97000 * 120.00005 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.02085 * 0.24703 * 10 9 7 23 23 H 1.08000 * 119.33243 * 180.02562 * 11 10 9 24 24 H 1.07997 * 119.35733 * 180.02562 * 12 11 10 25 25 H 1.08002 * 120.03956 * 180.02562 * 13 12 11 26 26 H 1.07998 * 118.88469 * 0.34157 * 16 15 14 27 27 H 1.08996 * 109.45453 * 103.34799 * 17 16 15 28 28 H 1.09001 * 109.44883 * 223.30821 * 17 16 15 29 29 H 1.09003 * 109.63676 * 167.86112 * 18 17 16 30 30 H 1.09001 * 109.63647 * 288.47410 * 18 17 16 31 31 H 1.08994 * 109.56192 * 290.65065 * 20 19 18 32 32 H 1.08998 * 109.25270 * 170.97695 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3753 2.1120 -1.3940 5 1 1.5005 2.6172 0.8106 6 1 3.5914 1.4100 0.5832 7 6 2.0081 -1.2133 0.0005 8 1 1.5077 -2.1256 0.2899 9 6 3.3640 -1.2433 -0.3761 10 6 3.8702 -0.3173 -1.3092 11 6 5.1843 -0.3621 -1.6685 12 6 6.0477 -1.3076 -1.1320 13 6 5.6094 -2.2391 -0.2148 14 6 4.2741 -2.2417 0.1909 15 6 3.7893 -3.2289 1.1683 16 6 3.5565 -2.8336 2.4089 17 6 3.0677 -3.7776 3.4731 18 6 2.5137 -5.0461 2.8185 19 8 3.4637 -5.5097 1.8515 20 6 3.5720 -4.6456 0.7169 21 1 -0.4850 0.8400 -0.0004 22 1 3.2173 0.4275 -1.7400 23 1 5.5618 0.3529 -2.3844 24 1 7.0830 -1.3137 -1.4391 25 1 6.2988 -2.9653 0.1899 26 1 3.7234 -1.7982 2.6665 27 1 3.8947 -4.0408 4.1325 28 1 2.2806 -3.2951 4.0526 29 1 2.3600 -5.8130 3.5778 30 1 1.5685 -4.8207 2.3246 31 1 2.6569 -4.7008 0.1274 32 1 4.4150 -4.9625 0.1029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245158734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:04 Heat of formation + Delta-G solvation = -21.324961 kcal Electronic energy + Delta-G solvation = -15739.834702 eV Core-core repulsion = 13243.786460 eV Total energy + Delta-G solvation = -2496.048242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.93947 -37.38230 -33.70101 -33.37264 -31.39860 -30.41267 -28.37057 -25.19966 -24.73898 -23.23094 -21.18055 -20.37530 -17.58098 -17.40150 -16.29562 -15.68990 -15.34474 -14.82736 -14.08959 -13.77925 -13.50802 -13.26980 -12.72938 -12.51076 -12.24135 -12.00324 -11.86534 -11.57180 -11.01572 -10.89200 -10.83739 -10.34145 -10.27555 -9.84931 -9.62535 -9.29356 -9.04726 -8.06600 -7.66747 -7.42297 -7.05345 -4.52525 2.41117 2.68548 2.93863 3.06437 3.16885 3.27472 3.91452 4.28857 4.44707 5.26465 5.31774 5.37368 5.62384 5.71089 5.87137 5.98010 5.98903 6.04919 6.07451 6.08683 6.29383 6.39519 6.56171 6.66693 6.84990 7.13832 7.20272 7.29666 7.47806 7.62744 7.73882 7.78042 7.88354 8.05727 8.28109 8.62967 8.71612 9.95809 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.011102 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.638746 B = 2521.358284 C = 3339.498401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.429 4.429 8 H 0.092 0.908 9 C 0.109 3.891 10 C -0.245 4.245 11 C -0.070 4.070 12 C -0.254 4.254 13 C -0.062 4.062 14 C -0.175 4.175 15 C -0.071 4.071 16 C -0.156 4.156 17 C -0.116 4.116 18 C 0.058 3.942 19 O -0.386 6.386 20 C 0.099 3.901 21 H 0.287 0.713 22 H 0.099 0.901 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -3.392 3.325 6.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.456 4.456 8 H 0.110 0.890 9 C 0.106 3.894 10 C -0.264 4.264 11 C -0.088 4.088 12 C -0.274 4.274 13 C -0.081 4.081 14 C -0.176 4.176 15 C -0.072 4.072 16 C -0.174 4.174 17 C -0.154 4.154 18 C -0.019 4.019 19 O -0.305 6.305 20 C 0.023 3.977 21 H 0.097 0.903 22 H 0.117 0.883 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.536 -3.473 3.363 5.989 hybrid contribution 0.023 1.228 -0.152 1.238 sum 3.559 -2.244 3.211 5.293 Atomic orbital electron populations 1.69657 1.08177 1.30469 1.34002 1.26222 0.94703 1.01829 0.90778 0.86316 0.81398 0.79635 0.78960 1.19563 1.21790 1.16633 1.19356 0.92899 0.95980 1.37384 0.89025 1.18724 0.92088 0.89666 0.88942 1.20680 0.95919 1.05123 1.04688 1.20274 0.93826 0.96913 0.97827 1.20136 0.98247 1.02278 1.06703 1.20660 0.94155 0.97105 0.96145 1.19611 0.92798 1.02088 1.03141 1.20044 0.99233 0.94058 0.93833 1.22426 1.02265 0.98996 0.93743 1.21019 1.00798 0.95729 0.97811 1.22598 0.91860 0.95862 0.91566 1.88053 1.62105 1.48313 1.32037 1.21462 1.01613 0.87214 0.87386 0.90280 0.88300 0.89275 0.89139 0.88755 0.87353 0.91004 0.90667 0.89385 0.92746 0.91988 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 13.92 55.56 0.77 -19.99 16 2 C 0.08 2.17 5.41 -17.31 -0.09 2.08 16 3 Si 0.91 20.59 24.53 -169.99 -4.17 16.42 16 4 H -0.27 -5.94 6.72 56.52 0.38 -5.56 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.24 -5.69 6.86 56.52 0.39 -5.31 16 7 C -0.43 -11.26 8.89 -37.93 -0.34 -11.60 16 8 H 0.09 2.54 7.66 -52.49 -0.40 2.14 16 9 C 0.11 2.73 5.26 -104.62 -0.55 2.18 16 10 C -0.25 -5.91 7.14 -39.28 -0.28 -6.20 16 11 C -0.07 -1.54 9.91 -40.06 -0.40 -1.94 16 12 C -0.25 -5.37 9.98 -39.50 -0.39 -5.76 16 13 C -0.06 -1.34 9.80 -39.22 -0.38 -1.72 16 14 C -0.17 -4.01 5.32 -102.46 -0.55 -4.56 16 15 C -0.07 -1.48 4.41 -103.14 -0.46 -1.94 16 16 C -0.16 -3.07 9.48 -36.37 -0.34 -3.42 16 17 C -0.12 -1.84 6.36 -27.96 -0.18 -2.02 16 18 C 0.06 0.89 6.88 37.22 0.26 1.15 16 19 O -0.39 -6.86 10.84 -35.23 -0.38 -7.24 16 20 C 0.10 1.85 6.75 35.80 0.24 2.09 16 21 H 0.29 6.74 8.29 -40.82 -0.34 6.41 16 22 H 0.10 2.37 4.77 -52.48 -0.25 2.12 16 23 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 24 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 25 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.11 2.25 8.00 -52.49 -0.42 1.83 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 267.27 15.07 4.03 4.03 Total: -1.00 -27.14 267.27 -7.26 -34.40 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.04 Total: 4.03 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -3.46 Total: -31.65 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.77 Total: -19.99 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.38 Total: -7.24 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.14 -7.26 -34.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245158734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.077 kcal (2) G-P(sol) polarization free energy of solvation -27.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds