Wall clock time and date at job start Sun Mar 29 2020 22:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48505 * 109.46941 * 275.38200 * 3 2 1 5 5 H 1.48502 * 109.47187 * 35.37802 * 3 2 1 6 6 H 1.48502 * 109.47255 * 155.38410 * 3 2 1 7 7 C 1.40099 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 342.00655 * 7 2 1 9 9 C 1.40759 * 120.00486 * 162.00156 * 7 2 1 10 10 C 1.40873 * 120.61870 * 329.87212 * 9 7 2 11 11 C 1.36308 * 119.95720 * 180.27109 * 10 9 7 12 12 C 1.38816 * 121.34347 * 359.97438 * 11 10 9 13 13 C 1.37883 * 121.29771 * 0.02562 * 12 11 10 14 14 C 1.39549 * 119.91935 * 359.97438 * 13 12 11 15 15 C 1.47142 * 120.63954 * 179.97438 * 14 13 12 16 16 C 1.32261 * 118.72318 * 105.02272 * 15 14 13 17 17 C 1.50423 * 122.22356 * 180.37341 * 16 15 14 18 18 C 1.53120 * 109.57277 * 343.31185 * 17 16 15 19 19 O 1.43266 * 108.46505 * 48.16926 * 18 17 16 20 20 C 1.43028 * 112.96406 * 290.95494 * 19 18 17 21 21 H 0.97000 * 120.00005 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.02085 * 0.24703 * 10 9 7 23 23 H 1.08000 * 119.33243 * 180.02562 * 11 10 9 24 24 H 1.07997 * 119.35733 * 180.02562 * 12 11 10 25 25 H 1.08002 * 120.03956 * 180.02562 * 13 12 11 26 26 H 1.07998 * 118.88469 * 0.34157 * 16 15 14 27 27 H 1.08996 * 109.45453 * 103.34799 * 17 16 15 28 28 H 1.09001 * 109.44883 * 223.30821 * 17 16 15 29 29 H 1.09003 * 109.63676 * 167.86112 * 18 17 16 30 30 H 1.09001 * 109.63647 * 288.47410 * 18 17 16 31 31 H 1.08994 * 109.56192 * 290.65065 * 20 19 18 32 32 H 1.08998 * 109.25270 * 170.97695 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3753 2.1120 -1.3940 5 1 1.5005 2.6172 0.8106 6 1 3.5914 1.4100 0.5832 7 6 2.0081 -1.2133 0.0005 8 1 1.5077 -2.1256 0.2899 9 6 3.3640 -1.2433 -0.3761 10 6 3.8702 -0.3173 -1.3092 11 6 5.1843 -0.3621 -1.6685 12 6 6.0477 -1.3076 -1.1320 13 6 5.6094 -2.2391 -0.2148 14 6 4.2741 -2.2417 0.1909 15 6 3.7893 -3.2289 1.1683 16 6 3.5565 -2.8336 2.4089 17 6 3.0677 -3.7776 3.4731 18 6 2.5137 -5.0461 2.8185 19 8 3.4637 -5.5097 1.8515 20 6 3.5720 -4.6456 0.7169 21 1 -0.4850 0.8400 -0.0004 22 1 3.2173 0.4275 -1.7400 23 1 5.5618 0.3529 -2.3844 24 1 7.0830 -1.3137 -1.4391 25 1 6.2988 -2.9653 0.1899 26 1 3.7234 -1.7982 2.6665 27 1 3.8947 -4.0408 4.1325 28 1 2.2806 -3.2951 4.0526 29 1 2.3600 -5.8130 3.5778 30 1 1.5685 -4.8207 2.3246 31 1 2.6569 -4.7008 0.1274 32 1 4.4150 -4.9625 0.1029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245158734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:04 Heat of formation + Delta-G solvation = -36.377224 kcal Electronic energy + Delta-G solvation = -15740.487417 eV Core-core repulsion = 13243.786460 eV Total energy + Delta-G solvation = -2496.700957 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41983 -39.06848 -35.57483 -34.90278 -32.82737 -32.24708 -30.01393 -27.01527 -26.19212 -24.69009 -22.97311 -22.04841 -19.33274 -19.05532 -17.88503 -17.13228 -16.96168 -16.38698 -15.82119 -15.51608 -15.15937 -14.67553 -14.46296 -14.13459 -13.82957 -13.52608 -13.49040 -13.16464 -12.74204 -12.59121 -12.50483 -12.05276 -11.79259 -11.62880 -11.29183 -11.05885 -10.53914 -9.67671 -9.45036 -9.16726 -8.95183 -6.46268 0.64760 0.88914 1.23127 1.30049 1.41192 1.45028 2.08070 2.59533 2.95240 3.43977 3.94337 4.08158 4.12193 4.31515 4.36828 4.41908 4.44500 4.57920 4.60326 4.77976 4.83232 4.87575 5.00221 5.04185 5.13179 5.31899 5.52678 5.65015 5.84857 5.90819 6.06234 6.07281 6.21293 6.23868 6.40691 6.74151 6.83920 8.12012 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.011102 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.638746 B = 2521.358284 C = 3339.498401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.052 3.948 3 Si 0.960 3.040 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.456 4.456 8 H 0.059 0.941 9 C 0.085 3.915 10 C -0.261 4.261 11 C -0.080 4.080 12 C -0.238 4.238 13 C -0.071 4.071 14 C -0.178 4.178 15 C -0.096 4.096 16 C -0.157 4.157 17 C -0.113 4.113 18 C 0.054 3.946 19 O -0.389 6.389 20 C 0.107 3.893 21 H 0.294 0.706 22 H 0.095 0.905 23 H 0.121 0.879 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -3.636 3.667 7.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.164 4.164 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.484 4.484 8 H 0.077 0.923 9 C 0.082 3.918 10 C -0.281 4.281 11 C -0.098 4.098 12 C -0.257 4.257 13 C -0.089 4.089 14 C -0.180 4.180 15 C -0.096 4.096 16 C -0.175 4.175 17 C -0.150 4.150 18 C -0.023 4.023 19 O -0.308 6.308 20 C 0.031 3.969 21 H 0.105 0.895 22 H 0.113 0.887 23 H 0.138 0.862 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.144 0.856 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.639 -3.721 3.703 7.704 hybrid contribution -0.447 1.212 -0.249 1.316 sum 5.192 -2.508 3.454 6.722 Atomic orbital electron populations 1.69679 1.09047 1.31500 1.36266 1.26779 0.95244 1.03919 0.90473 0.85563 0.79589 0.77031 0.79410 1.18495 1.20401 1.18105 1.19219 0.93915 0.95316 1.39992 0.92294 1.18950 0.92048 0.91087 0.89671 1.20826 0.97178 1.05178 1.04874 1.20655 0.93029 0.97810 0.98299 1.20645 0.99778 1.00530 1.04778 1.21046 0.93868 0.97837 0.96187 1.20007 0.93435 1.01610 1.02926 1.20203 1.00618 0.94872 0.93892 1.22662 1.01218 0.98938 0.94731 1.21084 1.01908 0.95098 0.96942 1.22831 0.90798 0.96868 0.91765 1.88044 1.62680 1.48048 1.32038 1.21326 1.01518 0.86246 0.87824 0.89499 0.88740 0.86153 0.85586 0.86070 0.89253 0.88809 0.89258 0.85562 0.93898 0.93171 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.20 13.92 21.85 0.30 -44.90 16 2 C 0.05 2.74 5.41 85.30 0.46 3.20 16 3 Si 0.96 42.89 24.53 68.60 1.68 44.57 16 4 H -0.26 -11.03 6.72 99.48 0.67 -10.36 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -11.91 6.86 99.48 0.68 -11.23 16 7 C -0.46 -25.01 8.89 23.34 0.21 -24.81 16 8 H 0.06 3.50 7.66 -2.91 -0.02 3.48 16 9 C 0.09 4.33 5.26 -19.86 -0.10 4.22 16 10 C -0.26 -12.46 7.14 22.46 0.16 -12.30 16 11 C -0.08 -3.30 9.91 21.96 0.22 -3.08 16 12 C -0.24 -9.20 9.98 22.32 0.22 -8.98 16 13 C -0.07 -2.88 9.80 22.50 0.22 -2.66 16 14 C -0.18 -8.12 5.32 -18.47 -0.10 -8.22 16 15 C -0.10 -3.96 4.41 -18.71 -0.08 -4.04 16 16 C -0.16 -6.17 9.48 24.55 0.23 -5.94 16 17 C -0.11 -3.40 6.36 29.80 0.19 -3.21 16 18 C 0.05 1.56 6.88 72.02 0.50 2.05 16 19 O -0.39 -13.18 10.84 -148.98 -1.62 -14.80 16 20 C 0.11 3.94 6.75 71.10 0.48 4.42 16 21 H 0.29 14.27 8.29 -92.71 -0.77 13.50 16 22 H 0.09 4.51 4.77 -2.91 -0.01 4.49 16 23 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 24 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 25 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 26 H 0.09 3.78 8.00 -2.91 -0.02 3.76 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.04 1.34 8.09 -2.39 -0.02 1.32 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 Total: -1.00 -59.06 267.27 4.02 -55.04 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.04 Total: 19.42 kcal Atomic # 6 Polarization: -61.94 SS G_CDS: 2.60 Total: -59.34 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.30 Total: -44.90 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.62 Total: -14.80 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.68 Total: 44.57 kcal Total: -59.06 4.02 -55.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245158734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.664 kcal (2) G-P(sol) polarization free energy of solvation -59.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds