Wall clock time and date at job start Sun Mar 29 2020 22:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48498 * 109.47371 * 274.69551 * 3 2 1 5 5 H 1.48504 * 109.47192 * 34.69789 * 3 2 1 6 6 H 1.48497 * 109.47178 * 154.69272 * 3 2 1 7 7 C 1.39926 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99976 * 197.74180 * 7 2 1 9 9 C 1.41426 * 120.00353 * 17.74523 * 7 2 1 10 10 C 1.40800 * 120.18059 * 204.36262 * 9 7 2 11 11 C 1.37691 * 120.03626 * 179.97438 * 10 9 7 12 12 C 1.38393 * 120.40212 * 0.02885 * 11 10 9 13 13 C 1.39874 * 120.35392 * 359.97438 * 12 11 10 14 14 C 1.47839 * 120.01852 * 179.97438 * 13 12 11 15 15 C 1.31626 * 118.68178 * 114.98138 * 14 13 12 16 16 C 1.50891 * 122.38784 * 180.35097 * 15 14 13 17 17 C 1.53126 * 109.32377 * 343.46601 * 16 15 14 18 18 O 1.43280 * 108.61849 * 48.01302 * 17 16 15 19 19 C 1.42889 * 113.08426 * 291.20528 * 18 17 16 20 20 C 1.38966 * 119.96237 * 0.25492 * 13 12 11 21 21 H 0.96995 * 120.00216 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.97997 * 359.97438 * 10 9 7 23 23 H 1.08001 * 119.80412 * 180.02562 * 11 10 9 24 24 H 1.08001 * 119.82276 * 179.97438 * 12 11 10 25 25 H 1.07996 * 118.84180 * 0.37562 * 15 14 13 26 26 H 1.08995 * 109.71045 * 223.42773 * 16 15 14 27 27 H 1.09000 * 109.45027 * 103.33554 * 16 15 14 28 28 H 1.08999 * 109.63682 * 288.22388 * 17 16 15 29 29 H 1.08995 * 109.64212 * 167.80877 * 17 16 15 30 30 H 1.09006 * 109.36485 * 170.64774 * 19 18 17 31 31 H 1.09001 * 109.36160 * 290.25496 * 19 18 17 32 32 H 1.08001 * 120.20316 * 179.72546 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3905 2.1038 -1.3953 5 1 1.4929 2.6220 0.7970 6 1 3.5859 1.4136 0.5985 7 6 2.0079 -1.2118 -0.0005 8 1 3.0495 -1.2342 0.2845 9 6 1.3513 -2.4073 -0.3744 10 6 1.8276 -3.6500 0.0854 11 6 1.1857 -4.8121 -0.2799 12 6 0.0715 -4.7688 -1.0996 13 6 -0.4157 -3.5434 -1.5660 14 6 -1.6062 -3.5058 -2.4418 15 6 -2.7013 -2.9283 -1.9947 16 6 -3.9657 -2.8495 -2.8144 17 6 -3.6372 -3.1380 -4.2819 18 8 -2.8271 -4.3181 -4.3457 19 6 -1.5176 -4.1287 -3.8063 20 6 0.2234 -2.3617 -1.2104 21 1 -0.4850 0.8400 0.0004 22 1 2.6969 -3.6917 0.7251 23 1 1.5540 -5.7632 0.0753 24 1 -0.4245 -5.6861 -1.3807 25 1 -2.6951 -2.4947 -1.0057 26 1 -4.3980 -1.8526 -2.7283 27 1 -4.6807 -3.5874 -2.4506 28 1 -3.0918 -2.2958 -4.7076 29 1 -4.5601 -3.2964 -4.8397 30 1 -1.0145 -5.0928 -3.7315 31 1 -0.9463 -3.4752 -4.4655 32 1 -0.1469 -1.4137 -1.5719 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245158973.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:19 Heat of formation + Delta-G solvation = -25.381192 kcal Electronic energy + Delta-G solvation = -15413.076717 eV Core-core repulsion = 12916.852584 eV Total energy + Delta-G solvation = -2496.224133 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.09959 -37.34897 -34.02314 -33.20908 -31.48013 -29.55264 -28.19945 -25.34433 -24.82566 -23.42315 -20.96026 -20.36581 -17.78430 -17.16999 -16.02893 -15.81668 -15.17453 -14.68507 -14.53276 -13.58024 -13.40388 -13.21039 -12.68640 -12.45876 -12.33378 -11.87679 -11.68699 -11.27663 -11.15389 -10.97353 -10.66472 -10.49624 -10.38969 -9.71968 -9.57506 -9.19356 -9.15891 -8.35339 -7.42227 -7.28106 -6.76621 -4.37909 2.45607 2.80772 3.05727 3.07393 3.09663 3.22039 3.91778 4.13487 4.58015 5.12848 5.21981 5.38040 5.46568 5.70298 5.71710 5.80931 5.88061 5.93471 6.14954 6.24335 6.38528 6.50252 6.78054 7.03937 7.08649 7.17318 7.24518 7.35222 7.53991 7.57213 7.85792 8.02261 8.04581 8.26272 8.59693 8.87362 8.93586 10.17215 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.008131 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.964823 B = 3442.990688 C = 4218.521470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.223 4.223 11 C -0.096 4.096 12 C -0.227 4.227 13 C -0.050 4.050 14 C -0.100 4.100 15 C -0.157 4.157 16 C -0.118 4.118 17 C 0.057 3.943 18 O -0.384 6.384 19 C 0.101 3.899 20 C -0.144 4.144 21 H 0.280 0.720 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 -1.593 -5.335 7.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.243 4.243 11 C -0.114 4.114 12 C -0.246 4.246 13 C -0.051 4.051 14 C -0.100 4.100 15 C -0.175 4.175 16 C -0.155 4.155 17 C -0.020 4.020 18 O -0.303 6.303 19 C 0.025 3.975 20 C -0.163 4.163 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.133 0.867 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.024 -1.600 -5.390 7.540 hybrid contribution 0.455 1.083 0.366 1.231 sum -4.569 -0.517 -5.024 6.810 Atomic orbital electron populations 1.69821 1.07530 1.29110 1.35506 1.25891 0.94725 1.01261 0.92267 0.86320 0.80640 0.80766 0.79128 1.19376 1.20307 1.18567 1.19575 0.98115 0.91183 1.40536 0.90419 1.17563 0.91215 0.92133 0.88685 1.21038 1.03674 0.92900 1.06668 1.20447 0.96048 0.96516 0.98427 1.20372 1.01023 0.95161 1.08054 1.18530 0.94328 0.94151 0.98041 1.20512 0.94829 0.99067 0.95606 1.22524 0.93368 1.01012 1.00629 1.21133 0.97012 1.02045 0.95342 1.22608 0.95110 0.88317 0.95924 1.88049 1.25419 1.34763 1.82027 1.21379 0.83778 1.01299 0.91003 1.21468 0.98732 0.95742 1.00357 0.90947 0.89039 0.89302 0.89389 0.86681 0.90447 0.90625 0.92983 0.89164 0.88013 0.92148 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.42 10.96 55.55 0.61 -19.82 16 2 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 3 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.34 9.05 -37.74 -0.34 -12.68 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 9 C 0.11 2.85 5.57 -106.87 -0.60 2.25 16 10 C -0.22 -5.53 9.78 -38.81 -0.38 -5.91 16 11 C -0.10 -2.19 10.01 -39.72 -0.40 -2.59 16 12 C -0.23 -5.14 9.67 -38.91 -0.38 -5.51 16 13 C -0.05 -1.17 5.17 -105.09 -0.54 -1.71 16 14 C -0.10 -2.01 5.33 -102.77 -0.55 -2.56 16 15 C -0.16 -2.98 9.55 -36.08 -0.34 -3.32 16 16 C -0.12 -1.74 6.40 -27.72 -0.18 -1.91 16 17 C 0.06 0.80 6.87 37.22 0.26 1.05 16 18 O -0.38 -6.41 10.84 -35.23 -0.38 -6.79 16 19 C 0.10 1.77 6.73 35.79 0.24 2.01 16 20 C -0.14 -3.72 8.32 -38.47 -0.32 -4.04 16 21 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 22 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 23 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 24 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 25 H 0.12 2.38 7.99 -52.49 -0.42 1.96 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.70 8.05 -51.93 -0.42 1.29 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 LS Contribution 273.53 15.07 4.12 4.12 Total: -1.00 -27.73 273.53 -8.39 -36.11 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.09 Total: 5.83 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -3.62 Total: -33.10 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.82 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.38 Total: -6.79 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.73 -8.39 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245158973.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.732 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds