Wall clock time and date at job start Sun Mar 29 2020 22:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48498 * 109.47371 * 274.69551 * 3 2 1 5 5 H 1.48504 * 109.47192 * 34.69789 * 3 2 1 6 6 H 1.48497 * 109.47178 * 154.69272 * 3 2 1 7 7 C 1.39926 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99976 * 197.74180 * 7 2 1 9 9 C 1.41426 * 120.00353 * 17.74523 * 7 2 1 10 10 C 1.40800 * 120.18059 * 204.36262 * 9 7 2 11 11 C 1.37691 * 120.03626 * 179.97438 * 10 9 7 12 12 C 1.38393 * 120.40212 * 0.02885 * 11 10 9 13 13 C 1.39874 * 120.35392 * 359.97438 * 12 11 10 14 14 C 1.47839 * 120.01852 * 179.97438 * 13 12 11 15 15 C 1.31626 * 118.68178 * 114.98138 * 14 13 12 16 16 C 1.50891 * 122.38784 * 180.35097 * 15 14 13 17 17 C 1.53126 * 109.32377 * 343.46601 * 16 15 14 18 18 O 1.43280 * 108.61849 * 48.01302 * 17 16 15 19 19 C 1.42889 * 113.08426 * 291.20528 * 18 17 16 20 20 C 1.38966 * 119.96237 * 0.25492 * 13 12 11 21 21 H 0.96995 * 120.00216 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.97997 * 359.97438 * 10 9 7 23 23 H 1.08001 * 119.80412 * 180.02562 * 11 10 9 24 24 H 1.08001 * 119.82276 * 179.97438 * 12 11 10 25 25 H 1.07996 * 118.84180 * 0.37562 * 15 14 13 26 26 H 1.08995 * 109.71045 * 223.42773 * 16 15 14 27 27 H 1.09000 * 109.45027 * 103.33554 * 16 15 14 28 28 H 1.08999 * 109.63682 * 288.22388 * 17 16 15 29 29 H 1.08995 * 109.64212 * 167.80877 * 17 16 15 30 30 H 1.09006 * 109.36485 * 170.64774 * 19 18 17 31 31 H 1.09001 * 109.36160 * 290.25496 * 19 18 17 32 32 H 1.08001 * 120.20316 * 179.72546 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3905 2.1038 -1.3953 5 1 1.4929 2.6220 0.7970 6 1 3.5859 1.4136 0.5985 7 6 2.0079 -1.2118 -0.0005 8 1 3.0495 -1.2342 0.2845 9 6 1.3513 -2.4073 -0.3744 10 6 1.8276 -3.6500 0.0854 11 6 1.1857 -4.8121 -0.2799 12 6 0.0715 -4.7688 -1.0996 13 6 -0.4157 -3.5434 -1.5660 14 6 -1.6062 -3.5058 -2.4418 15 6 -2.7013 -2.9283 -1.9947 16 6 -3.9657 -2.8495 -2.8144 17 6 -3.6372 -3.1380 -4.2819 18 8 -2.8271 -4.3181 -4.3457 19 6 -1.5176 -4.1287 -3.8063 20 6 0.2234 -2.3617 -1.2104 21 1 -0.4850 0.8400 0.0004 22 1 2.6969 -3.6917 0.7251 23 1 1.5540 -5.7632 0.0753 24 1 -0.4245 -5.6861 -1.3807 25 1 -2.6951 -2.4947 -1.0057 26 1 -4.3980 -1.8526 -2.7283 27 1 -4.6807 -3.5874 -2.4506 28 1 -3.0918 -2.2958 -4.7076 29 1 -4.5601 -3.2964 -4.8397 30 1 -1.0145 -5.0928 -3.7315 31 1 -0.9463 -3.4752 -4.4655 32 1 -0.1469 -1.4137 -1.5719 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245158973.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:19 Heat of formation + Delta-G solvation = -39.749295 kcal Electronic energy + Delta-G solvation = -15413.699765 eV Core-core repulsion = 12916.852584 eV Total energy + Delta-G solvation = -2496.847181 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49933 -39.09428 -35.79263 -34.81618 -32.86910 -31.44050 -29.86955 -27.21589 -26.23614 -24.77849 -22.81935 -22.09886 -19.43804 -18.80107 -17.59930 -17.11856 -16.79733 -16.47147 -16.01906 -15.30863 -14.95322 -14.64915 -14.39640 -14.04608 -13.65244 -13.47464 -13.27826 -12.94059 -12.84298 -12.64256 -12.40499 -12.18396 -11.74333 -11.51565 -11.24329 -11.05365 -10.56993 -9.91407 -9.35144 -9.10187 -8.64019 -6.37268 0.73808 1.03189 1.33574 1.36138 1.49446 1.52264 2.18890 2.69909 2.92606 3.64458 3.80206 4.03895 4.06503 4.32762 4.39524 4.47557 4.51832 4.58833 4.69715 4.77538 4.90952 5.01455 5.02214 5.12578 5.27104 5.41389 5.51739 5.67968 5.90455 5.97480 6.08406 6.12440 6.19788 6.36057 6.66585 6.91963 7.00096 8.31385 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.008131 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.964823 B = 3442.990688 C = 4218.521470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.075 3.925 10 C -0.244 4.244 11 C -0.094 4.094 12 C -0.229 4.229 13 C -0.049 4.049 14 C -0.122 4.122 15 C -0.153 4.153 16 C -0.114 4.114 17 C 0.052 3.948 18 O -0.390 6.390 19 C 0.110 3.890 20 C -0.170 4.170 21 H 0.287 0.713 22 H 0.097 0.903 23 H 0.123 0.877 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 -1.794 -6.290 8.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.073 3.927 10 C -0.264 4.264 11 C -0.112 4.112 12 C -0.248 4.248 13 C -0.049 4.049 14 C -0.123 4.123 15 C -0.172 4.172 16 C -0.151 4.151 17 C -0.024 4.024 18 O -0.309 6.309 19 C 0.034 3.966 20 C -0.189 4.189 21 H 0.098 0.902 22 H 0.116 0.884 23 H 0.141 0.859 24 H 0.132 0.868 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.970 -1.820 -6.346 8.901 hybrid contribution 0.656 1.064 0.696 1.430 sum -5.314 -0.756 -5.650 7.793 Atomic orbital electron populations 1.69882 1.08940 1.30413 1.35764 1.26744 0.95510 1.04462 0.91239 0.85210 0.79208 0.76032 0.79379 1.18739 1.19167 1.18176 1.19821 0.98306 0.92484 1.42521 0.90716 1.17963 0.92088 0.93236 0.89445 1.21248 1.04461 0.93197 1.07452 1.20826 0.95555 0.97269 0.97540 1.20759 1.00891 0.95884 1.07311 1.18882 0.94845 0.93603 0.97604 1.20619 0.93908 1.00919 0.96816 1.22726 0.95199 0.99223 1.00026 1.21213 0.94876 1.03778 0.95216 1.22879 0.96212 0.87656 0.95625 1.88044 1.25045 1.36108 1.81666 1.21263 0.84662 1.01366 0.89335 1.21372 0.99698 0.96017 1.01821 0.90234 0.88440 0.85875 0.86806 0.89479 0.88404 0.89097 0.92769 0.85508 0.87413 0.91757 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.68 10.96 21.82 0.24 -43.44 16 2 C 0.04 1.80 5.14 85.25 0.44 2.24 16 3 Si 0.98 38.73 29.59 68.60 2.03 40.76 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.50 -27.68 9.05 23.46 0.21 -27.47 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.07 4.16 5.57 -21.32 -0.12 4.04 16 10 C -0.24 -12.32 9.78 22.77 0.22 -12.10 16 11 C -0.09 -4.20 10.01 22.18 0.22 -3.98 16 12 C -0.23 -10.18 9.67 22.70 0.22 -9.96 16 13 C -0.05 -2.31 5.17 -20.17 -0.10 -2.42 16 14 C -0.12 -4.87 5.33 -18.09 -0.10 -4.97 16 15 C -0.15 -5.75 9.55 25.12 0.24 -5.51 16 16 C -0.11 -3.06 6.40 29.95 0.19 -2.87 16 17 C 0.05 1.30 6.87 72.02 0.49 1.79 16 18 O -0.39 -11.96 10.84 -148.98 -1.61 -13.58 16 19 C 0.11 3.68 6.73 71.10 0.48 4.16 16 20 C -0.17 -9.12 8.32 22.99 0.19 -8.93 16 21 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 22 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 23 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 24 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 25 H 0.09 3.70 7.99 -2.91 -0.02 3.68 16 26 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.33 8.09 -2.39 -0.02 1.31 16 29 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.11 3.42 8.05 -2.38 -0.02 3.40 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 Total: -1.00 -61.14 273.53 4.35 -56.79 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 1.10 Total: 25.42 kcal Atomic # 6 Polarization: -68.55 SS G_CDS: 2.59 Total: -65.96 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.24 Total: -43.44 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.61 Total: -13.58 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -61.14 4.35 -56.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245158973.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.043 kcal (2) G-P(sol) polarization free energy of solvation -61.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds