Wall clock time and date at job start Sun Mar 29 2020 21:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38292 * 119.96981 * 265.00082 * 10 9 7 12 12 C 1.38227 * 120.12915 * 179.97438 * 11 10 9 13 13 C 1.38311 * 120.08448 * 359.97438 * 12 11 10 14 14 Cl 1.73596 * 120.02560 * 180.02562 * 13 12 11 15 15 C 1.38725 * 119.94645 * 0.03337 * 13 12 11 16 16 O 1.35979 * 120.06237 * 179.97438 * 15 13 12 17 17 C 1.38319 * 119.97820 * 84.72347 * 10 9 7 18 18 F 1.35097 * 120.03743 * 0.02562 * 17 10 9 19 19 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.07997 * 119.93428 * 359.97438 * 11 10 9 23 23 H 1.08004 * 119.95175 * 180.02562 * 12 11 10 24 24 H 0.96701 * 114.00452 * 89.99899 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6008 -4.2370 -1.1949 12 6 3.4991 -5.2875 -1.1985 13 6 4.0308 -5.7492 -0.0081 14 17 5.1595 -7.0682 -0.0145 15 6 3.6614 -5.1575 1.1910 16 8 4.1823 -5.6099 2.3628 17 6 2.7622 -4.0989 1.1918 18 9 2.4040 -3.5166 2.3570 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6246 -2.5563 -0.8919 22 1 2.1874 -3.8781 -2.1258 23 1 3.7868 -5.7478 -2.1323 24 1 5.0017 -5.1685 2.6254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057526.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:49 Heat of formation + Delta-G solvation = -101.850042 kcal Electronic energy + Delta-G solvation = -13512.624924 eV Core-core repulsion = 10751.358604 eV Total energy + Delta-G solvation = -2761.266321 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.84689 -40.62840 -38.09813 -37.51387 -35.33361 -32.84118 -30.76965 -28.94677 -25.47288 -23.80439 -22.53840 -19.42806 -18.57209 -18.51416 -17.91438 -16.99495 -16.59147 -16.13400 -15.58916 -14.92083 -14.66489 -14.44939 -13.94448 -13.81093 -13.38507 -12.90674 -12.79700 -12.46408 -12.25509 -12.24768 -11.89968 -11.50525 -11.42529 -10.63306 -9.71211 -9.51574 -8.23906 -6.37192 -0.04008 0.02697 0.99067 1.39740 1.41121 1.51934 2.31089 2.45713 2.88514 3.08603 3.41104 3.88307 3.94090 4.17952 4.46502 4.70608 4.93391 5.10783 5.16935 5.26124 5.60685 5.66971 5.68182 6.08224 6.57032 6.73523 7.31483 8.86088 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.042061 B = 0.007073 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.541354 B = 3958.027203 C = 4126.613321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.056 3.944 10 C -0.076 4.076 11 C -0.092 4.092 12 C -0.087 4.087 13 C -0.058 4.058 14 Cl -0.040 7.040 15 C 0.083 3.917 16 O -0.486 6.486 17 C 0.054 3.946 18 F -0.143 7.143 19 H 0.267 0.733 20 H 0.000 1.000 21 H 0.025 0.975 22 H 0.156 0.844 23 H 0.176 0.824 24 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.925 -10.664 -2.049 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.078 4.078 11 C -0.110 4.110 12 C -0.105 4.105 13 C -0.086 4.086 14 Cl -0.011 7.011 15 C 0.036 3.964 16 O -0.298 6.298 17 C 0.034 3.966 18 F -0.121 7.121 19 H 0.076 0.924 20 H 0.019 0.981 21 H 0.044 0.956 22 H 0.174 0.826 23 H 0.194 0.806 24 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 9.393 -11.028 -1.986 14.621 hybrid contribution 0.363 1.341 0.600 1.513 sum 9.756 -9.686 -1.386 13.818 Atomic orbital electron populations 1.70072 1.07649 1.28102 1.50865 1.25907 0.95786 1.03130 0.94405 0.85431 0.78449 0.78315 0.78798 1.19090 1.20676 1.19269 1.21282 0.93065 0.90905 1.51557 0.92545 1.18072 0.92713 0.90419 0.96874 1.20636 0.98047 0.96793 0.92280 1.21147 0.97354 0.95082 0.97447 1.21313 0.95669 0.95959 0.97600 1.21015 0.98793 0.95376 0.93376 1.98350 1.58933 1.44992 1.98823 1.17990 0.97814 0.94095 0.86505 1.84810 1.45623 1.63552 1.35814 1.18060 1.01387 0.95091 0.82034 1.91434 1.90623 1.83553 1.46515 0.92445 0.98141 0.95646 0.82635 0.80617 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.29 21.45 0.28 -54.77 14 2 C 0.01 0.36 5.46 84.65 0.46 0.82 14 3 Si 0.97 43.50 29.54 68.60 2.03 45.53 14 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 14 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 14 7 C -0.53 -29.57 9.09 25.60 0.23 -29.34 14 8 H 0.06 3.08 7.74 -2.91 -0.02 3.05 14 9 C 0.06 2.92 4.87 29.10 0.14 3.07 14 10 C -0.08 -3.22 5.07 -19.83 -0.10 -3.32 14 11 C -0.09 -3.02 9.68 22.28 0.22 -2.80 14 12 C -0.09 -2.28 9.82 22.28 0.22 -2.07 14 13 C -0.06 -1.64 6.33 22.40 0.14 -1.50 14 14 Cl -0.04 -0.92 28.50 -2.72 -0.08 -1.00 14 15 C 0.08 2.74 6.70 22.54 0.15 2.89 14 16 O -0.49 -14.12 12.83 -93.31 -1.20 -15.32 14 17 C 0.05 2.21 7.25 22.45 0.16 2.38 14 18 F -0.14 -6.53 16.41 44.97 0.74 -5.79 14 19 H 0.27 14.84 8.31 -92.71 -0.77 14.07 14 20 H 0.00 0.02 7.79 -2.39 -0.02 0.00 14 21 H 0.03 1.34 8.05 -2.39 -0.02 1.33 14 22 H 0.16 4.58 8.06 -2.91 -0.02 4.55 14 23 H 0.18 3.23 8.06 -2.91 -0.02 3.20 14 24 H 0.41 8.10 9.06 -74.06 -0.67 7.43 14 Total: -1.00 -64.98 243.24 3.97 -61.01 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 0.57 Total: 0.21 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 1.63 Total: -29.87 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.28 Total: -54.77 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.20 Total: -15.32 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.74 Total: -5.79 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -64.98 3.97 -61.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057526.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.841 kcal (2) G-P(sol) polarization free energy of solvation -64.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds