Wall clock time and date at job start Sun Mar 29 2020 21:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48506 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47181 * 300.00099 * 3 2 1 6 6 H 1.48503 * 109.47298 * 60.00331 * 3 2 1 7 7 C 1.37878 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46515 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.27830 * 115.22860 * 95.00097 * 11 10 9 13 13 C 1.50007 * 127.03644 * 181.36974 * 12 11 10 14 14 S 1.81949 * 109.25457 * 340.64772 * 13 12 11 15 15 O 1.42098 * 109.01268 * 291.42052 * 14 13 12 16 16 O 1.42099 * 108.79751 * 159.61141 * 14 13 12 17 17 C 1.82018 * 100.17636 * 45.55222 * 14 13 12 18 18 C 1.49034 * 115.22881 * 274.98453 * 11 10 9 19 19 H 0.96996 * 119.99685 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46855 * 60.00581 * 9 7 2 21 21 H 1.08992 * 109.47588 * 300.00161 * 9 7 2 22 22 H 1.09000 * 109.47096 * 60.00715 * 10 9 7 23 23 H 1.08994 * 109.47432 * 299.99790 * 10 9 7 24 24 H 1.08002 * 116.47766 * 1.07943 * 12 11 10 25 25 H 1.09005 * 109.49409 * 100.76243 * 13 12 11 26 26 H 1.09001 * 109.49055 * 220.83486 * 13 12 11 27 27 H 1.09003 * 109.72171 * 177.43141 * 17 14 13 28 28 H 1.09004 * 109.76148 * 56.79706 * 17 14 13 29 29 H 1.09002 * 108.97731 * 281.76526 * 18 11 10 30 30 H 1.09005 * 108.98219 * 40.47790 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 6 1.3072 -5.4891 -1.1533 13 6 0.5719 -6.7595 -1.4624 14 16 0.4560 -7.7682 0.0475 15 8 1.7527 -8.2360 0.3923 16 8 -0.6055 -8.7005 -0.1051 17 6 -0.0478 -6.4951 1.2468 18 6 1.0725 -5.4591 1.3416 19 1 -0.4849 0.8400 0.0004 20 1 0.6242 -2.5566 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8905 24 1 1.7218 -4.9554 -1.9958 25 1 -0.4292 -6.5220 -1.8225 26 1 1.1121 -7.3152 -2.2288 27 1 -0.2092 -6.9526 2.2229 28 1 -0.9661 -6.0141 0.9098 29 1 1.9316 -5.9103 1.8382 30 1 0.7247 -4.6142 1.9361 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060228.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:40 Heat of formation + Delta-G solvation = -70.012747 kcal Electronic energy + Delta-G solvation = -14075.316988 eV Core-core repulsion = 11576.768343 eV Total energy + Delta-G solvation = -2498.548646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.08862 -36.85795 -36.02836 -33.46569 -31.90229 -31.22049 -27.67827 -24.25313 -24.10210 -20.97802 -19.33724 -17.90033 -16.80346 -16.46264 -16.05611 -15.33082 -14.83096 -14.46426 -13.99820 -13.93496 -13.45758 -12.63944 -12.52636 -12.36023 -12.10599 -12.02158 -11.84994 -11.62035 -11.09248 -10.98601 -10.72416 -10.46553 -10.16826 -9.91160 -9.73174 -9.17121 -8.57176 -8.42362 -6.08197 -4.11128 0.02457 2.38612 2.62302 3.26039 3.34044 3.37955 3.63068 3.98321 4.39448 4.56663 4.65862 4.81548 4.99559 5.10524 5.28116 5.36748 5.50445 5.83018 5.92080 6.13946 6.27619 6.46066 6.58739 6.95005 7.16824 7.57989 7.70544 7.91117 8.32072 8.96051 9.53713 11.02923 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.065756 B = 0.005447 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.712223 B = 5139.027951 C = 5183.994371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.088 4.088 11 C -0.105 4.105 12 C -0.165 4.165 13 C -0.555 4.555 14 S 2.412 3.588 15 O -0.936 6.936 16 O -0.951 6.951 17 C -0.595 4.595 18 C -0.074 4.074 19 H 0.260 0.740 20 H 0.018 0.982 21 H 0.018 0.982 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 -12.249 0.180 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.126 4.126 11 C -0.106 4.106 12 C -0.184 4.184 13 C -0.684 4.684 14 S 2.595 3.405 15 O -0.933 6.933 16 O -0.948 6.948 17 C -0.725 4.725 18 C -0.111 4.111 19 H 0.070 0.930 20 H 0.037 0.963 21 H 0.036 0.964 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.139 0.861 25 H 0.157 0.843 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.113 0.887 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.004 -13.062 0.300 13.066 hybrid contribution 0.101 1.899 -0.233 1.916 sum 0.097 -11.163 0.067 11.164 Atomic orbital electron populations 1.69969 1.06082 1.26615 1.50763 1.25025 0.94854 0.99330 0.95211 0.86530 0.80132 0.83680 0.77625 1.19688 1.20994 1.20974 1.21286 0.93150 0.90930 1.50753 0.92498 1.19108 0.93731 0.90629 0.97553 1.21119 0.98506 0.91237 1.01705 1.20599 0.98450 0.98222 0.93296 1.20448 1.03694 0.95829 0.98462 1.28954 1.09337 1.09579 1.20522 1.08098 0.75455 0.77355 0.79588 1.93582 1.39047 1.78454 1.82212 1.93575 1.56996 1.58564 1.85643 1.30071 1.09347 1.15774 1.17296 1.19918 0.96162 0.98537 0.96496 0.92986 0.96340 0.96368 0.92027 0.92058 0.86064 0.84330 0.84662 0.84845 0.84672 0.88673 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.65 4.96 -27.88 -0.14 0.51 16 10 C -0.09 -1.69 4.92 -27.88 -0.14 -1.82 16 11 C -0.11 -1.65 4.98 -101.09 -0.50 -2.15 16 12 C -0.17 -2.36 9.11 -35.59 -0.32 -2.68 16 13 C -0.55 -6.10 6.66 35.67 0.24 -5.86 16 14 S 2.41 28.56 5.40 -107.50 -0.58 27.98 16 15 O -0.94 -14.04 17.91 -57.79 -1.04 -15.07 16 16 O -0.95 -13.66 18.11 -57.79 -1.05 -14.70 16 17 C -0.60 -6.41 6.50 37.10 0.24 -6.17 16 18 C -0.07 -0.98 5.31 -28.74 -0.15 -1.13 16 19 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 20 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.02 0.46 7.80 -51.93 -0.41 0.05 16 22 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 23 H 0.06 1.15 7.56 -51.93 -0.39 0.75 16 24 H 0.12 1.76 7.42 -52.49 -0.39 1.37 16 25 H 0.14 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.46 7.74 -51.93 -0.40 1.06 16 LS Contribution 266.06 15.07 4.01 4.01 Total: -1.00 -33.76 266.06 -8.21 -41.97 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -4.08 Total: -2.48 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -1.19 Total: -32.38 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -2.08 Total: -29.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 28.56 SS G_CDS: -0.58 Total: 27.98 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.76 -8.21 -41.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060228.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.042 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds