Wall clock time and date at job start Sun Mar 29 2020 21:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48506 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47181 * 300.00099 * 3 2 1 6 6 H 1.48503 * 109.47298 * 60.00331 * 3 2 1 7 7 C 1.37878 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46515 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.27830 * 115.22860 * 95.00097 * 11 10 9 13 13 C 1.50007 * 127.03644 * 181.36974 * 12 11 10 14 14 S 1.81949 * 109.25457 * 340.64772 * 13 12 11 15 15 O 1.42098 * 109.01268 * 291.42052 * 14 13 12 16 16 O 1.42099 * 108.79751 * 159.61141 * 14 13 12 17 17 C 1.82018 * 100.17636 * 45.55222 * 14 13 12 18 18 C 1.49034 * 115.22881 * 274.98453 * 11 10 9 19 19 H 0.96996 * 119.99685 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46855 * 60.00581 * 9 7 2 21 21 H 1.08992 * 109.47588 * 300.00161 * 9 7 2 22 22 H 1.09000 * 109.47096 * 60.00715 * 10 9 7 23 23 H 1.08994 * 109.47432 * 299.99790 * 10 9 7 24 24 H 1.08002 * 116.47766 * 1.07943 * 12 11 10 25 25 H 1.09005 * 109.49409 * 100.76243 * 13 12 11 26 26 H 1.09001 * 109.49055 * 220.83486 * 13 12 11 27 27 H 1.09003 * 109.72171 * 177.43141 * 17 14 13 28 28 H 1.09004 * 109.76148 * 56.79706 * 17 14 13 29 29 H 1.09002 * 108.97731 * 281.76526 * 18 11 10 30 30 H 1.09005 * 108.98219 * 40.47790 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 6 1.3072 -5.4891 -1.1533 13 6 0.5719 -6.7595 -1.4624 14 16 0.4560 -7.7682 0.0475 15 8 1.7527 -8.2360 0.3923 16 8 -0.6055 -8.7005 -0.1051 17 6 -0.0478 -6.4951 1.2468 18 6 1.0725 -5.4591 1.3416 19 1 -0.4849 0.8400 0.0004 20 1 0.6242 -2.5566 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8905 24 1 1.7218 -4.9554 -1.9958 25 1 -0.4292 -6.5220 -1.8225 26 1 1.1121 -7.3152 -2.2288 27 1 -0.2092 -6.9526 2.2229 28 1 -0.9661 -6.0141 0.9098 29 1 1.9316 -5.9103 1.8382 30 1 0.7247 -4.6142 1.9361 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060228.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:40 Heat of formation + Delta-G solvation = -93.585423 kcal Electronic energy + Delta-G solvation = -14076.339176 eV Core-core repulsion = 11576.768343 eV Total energy + Delta-G solvation = -2499.570834 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.28154 -37.93490 -37.07942 -35.38256 -33.01382 -32.75431 -29.21045 -25.99384 -25.11089 -22.72152 -20.39815 -18.97034 -18.55079 -17.62088 -17.22059 -16.55529 -16.37313 -15.84578 -15.22017 -15.10437 -14.50983 -14.29940 -13.83279 -13.67866 -13.36498 -13.19438 -13.08413 -13.06992 -12.83567 -12.50164 -12.25682 -11.74776 -11.69390 -11.54881 -11.19360 -11.00283 -10.54993 -9.83647 -8.20375 -6.30756 -0.91570 1.21183 1.39899 1.41319 1.53642 1.70273 2.41141 2.70532 3.00865 3.13448 3.53548 3.69778 3.84595 4.10785 4.13841 4.44967 4.53915 4.67921 4.83133 4.90247 4.96384 5.03647 5.12530 5.36763 5.52601 5.66941 5.86008 6.06338 6.25272 6.86691 7.38662 8.91062 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.065756 B = 0.005447 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.712223 B = 5139.027951 C = 5183.994371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.080 4.080 11 C -0.127 4.127 12 C -0.154 4.154 13 C -0.551 4.551 14 S 2.432 3.568 15 O -0.969 6.969 16 O -0.975 6.975 17 C -0.587 4.587 18 C -0.077 4.077 19 H 0.263 0.737 20 H -0.006 1.006 21 H 0.000 1.000 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.117 0.883 25 H 0.164 0.836 26 H 0.160 0.840 27 H 0.160 0.840 28 H 0.149 0.851 29 H 0.105 0.895 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -12.575 0.011 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.117 4.117 11 C -0.127 4.127 12 C -0.173 4.173 13 C -0.680 4.680 14 S 2.618 3.382 15 O -0.966 6.966 16 O -0.972 6.972 17 C -0.718 4.718 18 C -0.114 4.114 19 H 0.072 0.928 20 H 0.013 0.987 21 H 0.018 0.982 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.135 0.865 25 H 0.181 0.819 26 H 0.178 0.822 27 H 0.177 0.823 28 H 0.167 0.833 29 H 0.124 0.876 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.267 -13.415 0.132 13.419 hybrid contribution 0.012 2.011 -0.227 2.024 sum 0.279 -11.404 -0.095 11.408 Atomic orbital electron populations 1.70087 1.07670 1.27650 1.51820 1.25918 0.95724 1.03152 0.94830 0.85457 0.79130 0.79082 0.77724 1.18696 1.20538 1.20434 1.21762 0.93595 0.92466 1.50306 0.92256 1.18974 0.94143 0.92049 0.95376 1.20900 0.97560 0.91426 1.01821 1.20521 0.99794 0.97320 0.95078 1.20642 1.02302 0.96593 0.97749 1.28969 1.10645 1.07694 1.20730 1.07383 0.74099 0.77121 0.79594 1.93539 1.40579 1.79577 1.82896 1.93545 1.57489 1.60022 1.86128 1.30025 1.08848 1.14459 1.18474 1.19912 0.97530 0.98944 0.95056 0.92811 0.98742 0.98201 0.91782 0.92096 0.86533 0.81863 0.82239 0.82251 0.83279 0.87639 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.57 4.96 29.85 0.15 1.72 16 10 C -0.08 -3.05 4.92 29.85 0.15 -2.90 16 11 C -0.13 -3.87 4.98 -14.02 -0.07 -3.94 16 12 C -0.15 -4.14 9.11 28.41 0.26 -3.89 16 13 C -0.55 -10.63 6.66 71.02 0.47 -10.16 16 14 S 2.43 52.61 5.40 -56.49 -0.31 52.30 16 15 O -0.97 -27.60 17.91 -127.41 -2.28 -29.88 16 16 O -0.97 -26.07 18.11 -127.41 -2.31 -28.38 16 17 C -0.59 -11.34 6.50 71.94 0.47 -10.87 16 18 C -0.08 -1.96 5.31 29.29 0.16 -1.80 16 19 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 20 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 21 H 0.00 -0.02 7.80 -2.39 -0.02 -0.04 16 22 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 23 H 0.06 2.28 7.56 -2.39 -0.02 2.26 16 24 H 0.12 3.25 7.42 -2.91 -0.02 3.22 16 25 H 0.16 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.11 2.42 8.14 -2.39 -0.02 2.41 16 30 H 0.09 2.60 7.74 -2.38 -0.02 2.58 16 Total: -1.00 -72.07 266.06 0.81 -71.26 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.12 Total: 5.20 kcal Atomic # 6 Polarization: -63.20 SS G_CDS: 2.28 Total: -60.93 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -4.59 Total: -58.26 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 52.61 SS G_CDS: -0.31 Total: 52.30 kcal Total: -72.07 0.81 -71.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060228.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.323 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds