Wall clock time and date at job start Sun Mar 29 2020 22:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99734 * 2 1 4 4 H 1.48507 * 109.46848 * 239.99813 * 3 2 1 5 5 H 1.48504 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47413 * 119.99838 * 3 2 1 7 7 C 1.37872 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47018 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47557 * 180.02562 * 11 10 9 13 13 C 1.38738 * 119.79799 * 89.99405 * 12 11 10 14 14 C 1.37848 * 120.69043 * 180.02562 * 13 12 11 15 15 C 1.38937 * 119.81556 * 0.02562 * 14 13 12 16 16 O 1.34814 * 133.49351 * 180.02562 * 15 14 13 17 17 C 1.34443 * 110.88753 * 179.97438 * 16 15 14 18 18 C 1.33998 * 110.15778 * 0.02562 * 17 16 15 19 19 C 1.40484 * 119.22530 * 359.97438 * 15 14 13 20 20 C 1.36748 * 119.78973 * 269.97672 * 12 11 10 21 21 H 0.96994 * 120.00102 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46751 * 60.00667 * 9 7 2 23 23 H 1.08989 * 109.47069 * 300.00119 * 9 7 2 24 24 H 1.09002 * 109.47119 * 60.00229 * 10 9 7 25 25 H 1.09006 * 109.47512 * 300.00197 * 10 9 7 26 26 H 1.09002 * 109.47170 * 59.99859 * 11 10 9 27 27 H 1.09001 * 109.46940 * 299.99936 * 11 10 9 28 28 H 1.08003 * 119.65307 * 359.97438 * 13 12 11 29 29 H 1.08000 * 120.09001 * 179.97438 * 14 13 12 30 30 H 1.07999 * 124.92514 * 179.97438 * 17 16 15 31 31 H 1.08001 * 126.91274 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.13971 * 359.97245 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4597 -6.1325 0.0005 13 6 2.9069 -6.6565 1.2048 14 6 3.8030 -7.7038 1.2268 15 6 4.2656 -8.2424 0.0326 16 8 5.1204 -9.2415 -0.2652 17 6 5.2448 -9.3851 -1.5962 18 6 4.4788 -8.4875 -2.2311 19 6 3.8090 -7.7074 -1.1835 20 6 2.9017 -6.6491 -1.1860 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.8719 -3.6043 0.8906 25 1 2.8721 -3.6043 -0.8895 26 1 0.8540 -5.0446 -0.8903 27 1 0.8535 -5.0451 0.8897 28 1 2.5499 -6.2390 2.1346 29 1 4.1450 -8.1040 2.1698 30 1 5.8720 -10.1172 -2.0831 31 1 4.3747 -8.3634 -3.2989 32 1 2.5501 -6.2383 -2.1208 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065200.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:26 Heat of formation + Delta-G solvation = 4.248281 kcal Electronic energy + Delta-G solvation = -14664.751082 eV Core-core repulsion = 12169.811779 eV Total energy + Delta-G solvation = -2494.939303 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.36316 -38.29100 -34.47670 -32.77213 -32.42026 -30.09284 -29.25654 -26.69375 -23.80662 -22.79664 -21.28957 -21.19822 -20.00200 -17.41592 -16.98472 -16.23637 -16.05067 -15.10969 -14.47230 -14.20866 -14.04095 -13.35483 -13.06161 -12.75020 -12.68447 -12.39809 -11.66084 -11.49318 -11.27303 -10.88939 -10.67208 -10.63279 -10.46552 -10.18439 -9.64497 -9.33229 -9.09055 -8.32114 -8.26336 -8.13501 -5.97351 -3.99559 0.99413 1.48948 2.37712 2.81051 3.35171 3.39256 3.42136 3.82605 4.46502 4.48733 4.71575 5.06274 5.08161 5.27446 5.38282 5.45659 5.52100 5.64279 5.79035 5.97267 6.10281 6.27945 6.30311 6.39218 6.45044 6.58481 6.76702 6.92622 6.93688 7.15125 7.23060 7.70666 7.85664 8.03189 8.46219 9.07536 9.64363 11.13946 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.049436 B = 0.004346 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.258473 B = 6440.648502 C = 6556.868257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.082 4.082 12 C -0.079 4.079 13 C -0.087 4.087 14 C -0.109 4.109 15 C 0.037 3.963 16 O -0.200 6.200 17 C -0.003 4.003 18 C -0.209 4.209 19 C -0.131 4.131 20 C -0.073 4.073 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.204 0.796 31 H 0.155 0.845 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 -17.801 -1.600 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.120 4.120 12 C -0.079 4.079 13 C -0.105 4.105 14 C -0.127 4.127 15 C -0.010 4.010 16 O -0.102 6.102 17 C -0.068 4.068 18 C -0.228 4.228 19 C -0.132 4.132 20 C -0.091 4.091 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.221 0.779 31 H 0.173 0.827 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.413 -17.829 -1.395 19.359 hybrid contribution 0.488 0.980 -0.278 1.129 sum 7.901 -16.850 -1.673 18.685 Atomic orbital electron populations 1.69954 1.06038 1.26657 1.50963 1.25018 0.94839 0.99200 0.95378 0.86672 0.79595 0.83193 0.78623 1.20271 1.21292 1.20249 1.21242 0.93017 0.91161 1.50468 0.92795 1.19120 0.94014 0.91315 0.97230 1.21639 0.98990 0.92943 1.00549 1.20782 0.95971 0.92542 1.02674 1.19835 0.98593 0.97184 0.92297 1.20936 0.96198 0.94819 0.98543 1.19883 1.00096 0.98341 0.94412 1.19619 0.94562 0.90987 0.95812 1.83965 1.54717 1.46721 1.24777 1.23867 1.01620 1.01249 0.80033 1.22531 1.01761 0.98859 0.99672 1.19947 1.01218 0.99489 0.92571 1.20209 0.95962 0.94394 0.98577 0.92984 0.96597 0.96549 0.93267 0.93348 0.91308 0.91195 0.84631 0.85338 0.77913 0.82690 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.15 5.13 -26.74 -0.14 -2.29 16 11 C -0.08 -1.40 5.33 -27.89 -0.15 -1.55 16 12 C -0.08 -1.22 5.10 -104.98 -0.54 -1.76 16 13 C -0.09 -1.21 9.66 -39.54 -0.38 -1.60 16 14 C -0.11 -1.45 10.07 -39.47 -0.40 -1.85 16 15 C 0.04 0.53 7.42 -38.48 -0.29 0.25 16 16 O -0.20 -2.62 10.58 3.91 0.04 -2.58 16 17 C 0.00 -0.03 11.96 29.24 0.35 0.32 16 18 C -0.21 -2.41 11.14 -37.62 -0.42 -2.83 16 19 C -0.13 -1.91 6.40 -105.16 -0.67 -2.58 16 20 C -0.07 -1.10 9.68 -39.69 -0.38 -1.49 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.20 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 281.22 15.07 4.24 4.24 Total: -1.00 -31.92 281.22 -7.75 -39.67 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.19 Total: -3.08 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -3.56 Total: -28.69 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.92 -7.75 -39.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065200.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.920 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds