Wall clock time and date at job start Sun Mar 29 2020 22:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99734 * 2 1 4 4 H 1.48507 * 109.46848 * 239.99813 * 3 2 1 5 5 H 1.48504 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47413 * 119.99838 * 3 2 1 7 7 C 1.37872 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47018 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47557 * 180.02562 * 11 10 9 13 13 C 1.38738 * 119.79799 * 89.99405 * 12 11 10 14 14 C 1.37848 * 120.69043 * 180.02562 * 13 12 11 15 15 C 1.38937 * 119.81556 * 0.02562 * 14 13 12 16 16 O 1.34814 * 133.49351 * 180.02562 * 15 14 13 17 17 C 1.34443 * 110.88753 * 179.97438 * 16 15 14 18 18 C 1.33998 * 110.15778 * 0.02562 * 17 16 15 19 19 C 1.40484 * 119.22530 * 359.97438 * 15 14 13 20 20 C 1.36748 * 119.78973 * 269.97672 * 12 11 10 21 21 H 0.96994 * 120.00102 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46751 * 60.00667 * 9 7 2 23 23 H 1.08989 * 109.47069 * 300.00119 * 9 7 2 24 24 H 1.09002 * 109.47119 * 60.00229 * 10 9 7 25 25 H 1.09006 * 109.47512 * 300.00197 * 10 9 7 26 26 H 1.09002 * 109.47170 * 59.99859 * 11 10 9 27 27 H 1.09001 * 109.46940 * 299.99936 * 11 10 9 28 28 H 1.08003 * 119.65307 * 359.97438 * 13 12 11 29 29 H 1.08000 * 120.09001 * 179.97438 * 14 13 12 30 30 H 1.07999 * 124.92514 * 179.97438 * 17 16 15 31 31 H 1.08001 * 126.91274 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.13971 * 359.97245 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4597 -6.1325 0.0005 13 6 2.9069 -6.6565 1.2048 14 6 3.8030 -7.7038 1.2268 15 6 4.2656 -8.2424 0.0326 16 8 5.1204 -9.2415 -0.2652 17 6 5.2448 -9.3851 -1.5962 18 6 4.4788 -8.4875 -2.2311 19 6 3.8090 -7.7074 -1.1835 20 6 2.9017 -6.6491 -1.1860 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.8719 -3.6043 0.8906 25 1 2.8721 -3.6043 -0.8895 26 1 0.8540 -5.0446 -0.8903 27 1 0.8535 -5.0451 0.8897 28 1 2.5499 -6.2390 2.1346 29 1 4.1450 -8.1040 2.1698 30 1 5.8720 -10.1172 -2.0831 31 1 4.3747 -8.3634 -3.2989 32 1 2.5501 -6.2383 -2.1208 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065200.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:26 Heat of formation + Delta-G solvation = -12.883488 kcal Electronic energy + Delta-G solvation = -14665.493971 eV Core-core repulsion = 12169.811779 eV Total energy + Delta-G solvation = -2495.682192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.31970 -39.41324 -36.23638 -34.34921 -33.67728 -31.63439 -30.26203 -28.37484 -25.51196 -23.88941 -22.64258 -22.21089 -21.62038 -18.50671 -18.38802 -17.84776 -17.02112 -16.58429 -16.25707 -15.57429 -15.09579 -14.71701 -14.40407 -14.18993 -13.99662 -13.55657 -13.16370 -13.10965 -12.97192 -12.56973 -12.34586 -12.28607 -11.89512 -11.43271 -11.31720 -11.13756 -11.11049 -10.53813 -9.38702 -9.14267 -8.18996 -6.30203 0.00606 0.37425 1.40066 1.43065 1.48744 1.51118 1.91672 2.41631 2.72763 3.13727 3.55643 3.77721 3.89708 4.12845 4.27350 4.38006 4.47152 4.55696 4.59758 4.69007 4.86983 4.92675 5.06172 5.18328 5.25061 5.27929 5.34434 5.52499 5.54057 5.65702 5.70976 5.81805 5.87973 6.22619 6.27517 6.86525 7.38876 8.92429 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.049436 B = 0.004346 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.258473 B = 6440.648502 C = 6556.868257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.089 4.089 11 C -0.071 4.071 12 C -0.093 4.093 13 C -0.097 4.097 14 C -0.106 4.106 15 C 0.017 3.983 16 O -0.208 6.208 17 C 0.015 3.985 18 C -0.230 4.230 19 C -0.150 4.150 20 C -0.088 4.088 21 H 0.264 0.736 22 H -0.007 1.007 23 H -0.004 1.004 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.253 0.747 31 H 0.177 0.823 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.224 -18.720 -1.725 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.127 4.127 11 C -0.108 4.108 12 C -0.093 4.093 13 C -0.114 4.114 14 C -0.124 4.124 15 C -0.030 4.030 16 O -0.110 6.110 17 C -0.049 4.049 18 C -0.249 4.249 19 C -0.151 4.151 20 C -0.106 4.106 21 H 0.073 0.927 22 H 0.011 0.989 23 H 0.014 0.986 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.269 0.731 31 H 0.194 0.806 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.204 -18.762 -1.520 20.954 hybrid contribution -0.041 1.171 -0.278 1.204 sum 9.164 -17.592 -1.799 19.917 Atomic orbital electron populations 1.70083 1.07735 1.27834 1.51652 1.25960 0.95773 1.03266 0.94709 0.85530 0.78328 0.78218 0.79157 1.19303 1.20653 1.19178 1.21694 0.93462 0.92622 1.50643 0.92517 1.19039 0.94440 0.92902 0.95038 1.21403 0.97859 0.93077 1.00329 1.20572 0.96022 0.91324 1.02931 1.19701 0.99003 0.97233 0.93337 1.21109 0.96550 0.95242 0.98547 1.20167 0.99218 0.97644 0.95357 1.19917 0.95176 0.91646 0.96212 1.83982 1.54337 1.46223 1.26456 1.24831 1.00514 1.00867 0.78712 1.22874 1.02352 0.99193 1.00462 1.20324 1.01188 0.99514 0.94080 1.20314 0.96590 0.95068 0.98590 0.92736 0.98891 0.98589 0.93153 0.93734 0.91407 0.90680 0.83193 0.82841 0.73077 0.80584 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.76 5.13 30.59 0.16 -3.60 16 11 C -0.07 -2.45 5.33 29.84 0.16 -2.29 16 12 C -0.09 -2.85 5.10 -20.10 -0.10 -2.96 16 13 C -0.10 -2.62 9.66 22.30 0.22 -2.41 16 14 C -0.11 -2.67 10.07 22.34 0.23 -2.44 16 15 C 0.02 0.48 7.42 22.99 0.17 0.65 16 16 O -0.21 -4.96 10.58 -8.93 -0.09 -5.05 16 17 C 0.01 0.25 11.96 66.85 0.80 1.05 16 18 C -0.23 -4.82 11.14 23.54 0.26 -4.56 16 19 C -0.15 -4.22 6.40 -20.21 -0.13 -4.35 16 20 C -0.09 -2.63 9.68 22.20 0.21 -2.41 16 21 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 22 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.07 2.31 8.08 -2.39 -0.02 2.29 16 27 H 0.07 2.47 8.08 -2.39 -0.02 2.45 16 28 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.25 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -69.16 281.22 6.13 -63.03 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.09 Total: 5.30 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 2.82 Total: -53.02 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.08 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.09 Total: -5.05 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.16 6.13 -63.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065200.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.147 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds