Wall clock time and date at job start Sun Mar 29 2020 22:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47143 * 240.00053 * 3 2 1 5 5 H 1.48498 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00417 * 3 2 1 7 7 C 1.37881 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46651 * 179.97438 * 11 10 9 13 13 C 1.33994 * 126.91014 * 265.02565 * 12 11 10 14 14 O 1.34451 * 110.15467 * 179.73851 * 13 12 11 15 15 C 1.34804 * 110.88681 * 359.97438 * 14 13 12 16 16 C 1.38946 * 133.49086 * 179.97438 * 15 14 13 17 17 C 1.37840 * 119.81990 * 180.02562 * 16 15 14 18 18 C 1.38746 * 120.68452 * 0.02562 * 17 16 15 19 19 C 1.36736 * 120.41652 * 359.97438 * 18 17 16 20 20 C 1.39403 * 119.72057 * 0.04535 * 19 18 17 21 21 H 0.97006 * 119.99630 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47268 * 60.00735 * 9 7 2 23 23 H 1.09002 * 109.47933 * 300.00334 * 9 7 2 24 24 H 1.08996 * 109.47193 * 59.99847 * 10 9 7 25 25 H 1.09005 * 109.46939 * 299.99997 * 10 9 7 26 26 H 1.08997 * 109.47217 * 60.00434 * 11 10 9 27 27 H 1.08997 * 109.47361 * 299.99556 * 11 10 9 28 28 H 1.07996 * 124.91925 * 359.71676 * 13 12 11 29 29 H 1.08004 * 120.08847 * 0.02562 * 16 15 14 30 30 H 1.07999 * 119.66270 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.79228 * 179.97438 * 18 17 16 32 32 H 1.08008 * 120.14267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1327 -0.0018 13 6 2.9115 -6.8041 -1.0695 14 8 3.7780 -7.7573 -0.6844 15 6 3.9333 -7.7531 0.6546 16 6 4.6941 -8.5165 1.5315 17 6 4.6377 -8.2650 2.8856 18 6 3.8272 -7.2557 3.3851 19 6 3.0706 -6.4929 2.5392 20 6 3.1143 -6.7328 1.1666 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6245 -2.5572 0.8896 24 1 2.8718 -3.6045 0.8894 25 1 2.8718 -3.6045 -0.8906 26 1 0.8537 -5.0446 -0.8914 27 1 0.8531 -5.0451 0.8886 28 1 2.6217 -6.6083 -2.0913 29 1 5.3280 -9.3049 1.1532 30 1 5.2298 -8.8602 3.5649 31 1 3.7937 -7.0713 4.4487 32 1 2.4416 -5.7081 2.9327 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:46 Heat of formation + Delta-G solvation = 4.083832 kcal Electronic energy + Delta-G solvation = -14838.117486 eV Core-core repulsion = 12343.171052 eV Total energy + Delta-G solvation = -2494.946434 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.29041 -37.77563 -35.27413 -33.04631 -31.29605 -30.31088 -29.30051 -26.87560 -23.58662 -23.14986 -22.18783 -20.40418 -19.59717 -17.20280 -16.87946 -16.10902 -15.92479 -15.64756 -14.47168 -14.25945 -13.93061 -13.72044 -12.90171 -12.60168 -12.35958 -12.21604 -11.98612 -11.77169 -11.25005 -10.89989 -10.80085 -10.63381 -10.49506 -9.83178 -9.65166 -9.27635 -9.06050 -8.56480 -8.32905 -7.95343 -5.98275 -4.00439 1.00200 1.42275 2.53198 2.93719 3.34513 3.38634 3.41571 3.78618 4.47563 4.60322 4.72765 4.96670 5.09734 5.28099 5.37400 5.46318 5.51086 5.65275 5.78865 6.06010 6.09210 6.24890 6.28773 6.37386 6.50517 6.64992 6.69797 6.80693 6.91540 7.14880 7.30239 7.69405 7.84212 8.02061 8.45347 9.06499 9.63484 11.12996 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.005011 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.529869 B = 5585.865449 C = 5888.325926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.053 4.053 12 C -0.153 4.153 13 C -0.012 4.012 14 O -0.198 6.198 15 C 0.048 3.952 16 C -0.113 4.113 17 C -0.098 4.098 18 C -0.142 4.142 19 C -0.063 4.063 20 C -0.123 4.123 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.206 0.794 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -16.344 3.065 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.091 4.091 12 C -0.155 4.155 13 C -0.076 4.076 14 O -0.100 6.100 15 C 0.000 4.000 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.161 4.161 19 C -0.081 4.081 20 C -0.123 4.123 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.223 0.777 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.541 -16.403 2.890 17.894 hybrid contribution 0.368 1.119 -0.016 1.179 sum 6.910 -15.283 2.874 17.017 Atomic orbital electron populations 1.69957 1.06036 1.26656 1.50937 1.25017 0.94838 0.99195 0.95360 0.86670 0.79599 0.83184 0.78628 1.20255 1.21274 1.20266 1.21232 0.93003 0.91143 1.50503 0.92821 1.19118 0.93988 0.91314 0.97211 1.21627 0.98997 0.92936 1.00517 1.20198 0.95124 0.91258 1.02489 1.21494 1.02693 1.00484 0.90798 1.23749 0.93599 0.90384 0.99854 1.83969 1.55015 1.49877 1.21148 1.19669 0.99836 0.98611 0.81852 1.19867 1.01036 1.00823 0.91441 1.20873 0.99014 0.98034 0.93722 1.20758 0.98383 0.96980 0.99936 1.20413 0.98143 0.98652 0.90867 1.19930 0.99928 0.97900 0.94590 0.92982 0.96571 0.96597 0.93374 0.93394 0.91141 0.91236 0.77697 0.85434 0.85131 0.85516 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.17 5.14 -26.73 -0.14 -2.30 16 11 C -0.05 -0.92 5.76 -27.88 -0.16 -1.08 16 12 C -0.15 -2.47 5.61 -102.66 -0.58 -3.05 16 13 C -0.01 -0.17 11.89 29.24 0.35 0.18 16 14 O -0.20 -2.98 10.58 3.92 0.04 -2.93 16 15 C 0.05 0.72 7.42 -38.47 -0.29 0.43 16 16 C -0.11 -1.38 10.07 -39.46 -0.40 -1.77 16 17 C -0.10 -1.06 10.01 -39.54 -0.40 -1.45 16 18 C -0.14 -1.67 9.98 -39.94 -0.40 -2.07 16 19 C -0.06 -0.89 10.05 -39.69 -0.40 -1.29 16 20 C -0.12 -1.95 6.38 -105.16 -0.67 -2.62 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.21 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 281.77 15.07 4.25 4.25 Total: -1.00 -31.74 281.77 -7.81 -39.55 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -4.19 Total: -2.99 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -3.62 Total: -28.35 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.74 -7.81 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.632 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds