Wall clock time and date at job start Sun Mar 29 2020 22:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47143 * 240.00053 * 3 2 1 5 5 H 1.48498 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00417 * 3 2 1 7 7 C 1.37881 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46651 * 179.97438 * 11 10 9 13 13 C 1.33994 * 126.91014 * 265.02565 * 12 11 10 14 14 O 1.34451 * 110.15467 * 179.73851 * 13 12 11 15 15 C 1.34804 * 110.88681 * 359.97438 * 14 13 12 16 16 C 1.38946 * 133.49086 * 179.97438 * 15 14 13 17 17 C 1.37840 * 119.81990 * 180.02562 * 16 15 14 18 18 C 1.38746 * 120.68452 * 0.02562 * 17 16 15 19 19 C 1.36736 * 120.41652 * 359.97438 * 18 17 16 20 20 C 1.39403 * 119.72057 * 0.04535 * 19 18 17 21 21 H 0.97006 * 119.99630 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47268 * 60.00735 * 9 7 2 23 23 H 1.09002 * 109.47933 * 300.00334 * 9 7 2 24 24 H 1.08996 * 109.47193 * 59.99847 * 10 9 7 25 25 H 1.09005 * 109.46939 * 299.99997 * 10 9 7 26 26 H 1.08997 * 109.47217 * 60.00434 * 11 10 9 27 27 H 1.08997 * 109.47361 * 299.99556 * 11 10 9 28 28 H 1.07996 * 124.91925 * 359.71676 * 13 12 11 29 29 H 1.08004 * 120.08847 * 0.02562 * 16 15 14 30 30 H 1.07999 * 119.66270 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.79228 * 179.97438 * 18 17 16 32 32 H 1.08008 * 120.14267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1327 -0.0018 13 6 2.9115 -6.8041 -1.0695 14 8 3.7780 -7.7573 -0.6844 15 6 3.9333 -7.7531 0.6546 16 6 4.6941 -8.5165 1.5315 17 6 4.6377 -8.2650 2.8856 18 6 3.8272 -7.2557 3.3851 19 6 3.0706 -6.4929 2.5392 20 6 3.1143 -6.7328 1.1666 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6245 -2.5572 0.8896 24 1 2.8718 -3.6045 0.8894 25 1 2.8718 -3.6045 -0.8906 26 1 0.8537 -5.0446 -0.8914 27 1 0.8531 -5.0451 0.8886 28 1 2.6217 -6.6083 -2.0913 29 1 5.3280 -9.3049 1.1532 30 1 5.2298 -8.8602 3.5649 31 1 3.7937 -7.0713 4.4487 32 1 2.4416 -5.7081 2.9327 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:46 Heat of formation + Delta-G solvation = -12.932781 kcal Electronic energy + Delta-G solvation = -14838.855382 eV Core-core repulsion = 12343.171052 eV Total energy + Delta-G solvation = -2495.684330 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.36868 -38.74575 -36.88970 -34.91811 -32.87620 -31.35977 -30.48200 -28.60662 -25.42459 -24.20465 -23.18678 -22.20811 -20.84153 -18.53763 -18.20963 -17.76855 -17.04757 -16.61060 -16.50269 -15.76629 -15.04134 -14.73812 -14.52126 -14.13335 -13.90168 -13.56316 -13.20972 -13.10107 -12.81086 -12.64295 -12.45817 -12.41255 -11.85448 -11.44367 -11.38293 -11.30396 -10.70838 -10.55210 -9.57900 -9.04976 -8.20245 -6.31564 0.00384 0.41763 1.38802 1.41392 1.42148 1.50376 1.90788 2.40792 2.78923 3.12427 3.57040 3.67160 3.96789 4.15902 4.22697 4.43905 4.44782 4.51403 4.55283 4.68959 4.76490 4.90350 5.15881 5.18851 5.21514 5.31540 5.39413 5.49270 5.54006 5.56048 5.73922 5.77442 5.85586 6.23008 6.25770 6.84595 7.37489 8.91129 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.005011 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.529869 B = 5585.865449 C = 5888.325926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.040 4.040 12 C -0.187 4.187 13 C 0.004 3.996 14 O -0.203 6.203 15 C 0.023 3.977 16 C -0.114 4.114 17 C -0.090 4.090 18 C -0.135 4.135 19 C -0.093 4.093 20 C -0.150 4.150 21 H 0.264 0.736 22 H -0.003 1.003 23 H -0.008 1.008 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.238 0.762 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.367 -17.225 3.472 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.077 4.077 12 C -0.189 4.189 13 C -0.060 4.060 14 O -0.105 6.105 15 C -0.024 4.024 16 C -0.132 4.132 17 C -0.108 4.108 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.151 4.151 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.010 0.990 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.254 0.746 29 H 0.172 0.828 30 H 0.190 0.810 31 H 0.172 0.828 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.355 -17.300 3.302 19.494 hybrid contribution -0.185 1.327 -0.085 1.342 sum 8.171 -15.974 3.217 18.228 Atomic orbital electron populations 1.70085 1.07719 1.27856 1.51545 1.25953 0.95775 1.03236 0.94642 0.85529 0.78342 0.78213 0.79146 1.19177 1.20553 1.19346 1.21665 0.93385 0.92612 1.50803 0.92661 1.19024 0.94363 0.92824 0.95051 1.21376 0.97846 0.93186 1.00055 1.19920 0.95085 0.90012 1.02672 1.21392 1.04012 1.01310 0.92157 1.24314 0.92001 0.89011 1.00718 1.83965 1.55065 1.49982 1.21468 1.20126 1.00903 0.99438 0.81960 1.20357 1.00437 1.00761 0.91691 1.21381 0.98216 0.97403 0.93796 1.21160 0.97014 0.96126 1.01017 1.20576 0.99711 0.99850 0.90953 1.20189 1.00837 0.98834 0.95248 0.92702 0.98437 0.98973 0.94258 0.93227 0.90158 0.91916 0.74570 0.82755 0.81047 0.82819 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.76 5.14 30.60 0.16 -3.60 16 11 C -0.04 -1.41 5.76 29.85 0.17 -1.23 16 12 C -0.19 -6.08 5.61 -18.59 -0.10 -6.19 16 13 C 0.00 0.10 11.89 66.85 0.79 0.89 16 14 O -0.20 -5.88 10.58 -8.90 -0.09 -5.97 16 15 C 0.02 0.66 7.42 22.99 0.17 0.83 16 16 C -0.11 -2.48 10.07 22.35 0.23 -2.26 16 17 C -0.09 -1.64 10.01 22.30 0.22 -1.42 16 18 C -0.14 -2.90 9.98 22.04 0.22 -2.68 16 19 C -0.09 -2.66 10.05 22.20 0.22 -2.43 16 20 C -0.15 -4.80 6.38 -20.21 -0.13 -4.93 16 21 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 22 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 24 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.24 4.60 8.06 -2.91 -0.02 4.57 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -69.42 281.77 6.11 -63.31 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.09 Total: 5.51 kcal Atomic # 6 Polarization: -55.53 SS G_CDS: 2.80 Total: -52.74 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.09 Total: -5.97 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.42 6.11 -63.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.378 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds