Wall clock time and date at job start Sun Mar 29 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.37856 * 120.02245 * 264.99977 * 12 11 10 14 14 C 1.38720 * 120.69186 * 179.97438 * 13 12 11 15 15 C 1.37758 * 120.27554 * 0.02562 * 14 13 12 16 16 C 1.39381 * 119.59901 * 0.02562 * 15 14 13 17 17 C 1.46793 * 134.34387 * 179.97438 * 16 15 14 18 18 C 1.33993 * 106.18459 * 179.97438 * 17 16 15 19 19 O 1.34441 * 110.15842 * 359.97438 * 18 17 16 20 20 C 1.34840 * 110.89957 * 359.73633 * 19 18 17 21 21 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 24 24 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 25 25 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 28 28 H 1.08002 * 119.65569 * 359.97438 * 13 12 11 29 29 H 1.07997 * 119.86315 * 180.02562 * 14 13 12 30 30 H 1.07999 * 120.20360 * 179.97438 * 15 14 13 31 31 H 1.07998 * 126.91008 * 0.02562 * 17 16 15 32 32 H 1.07998 * 124.91941 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0538 -4.0574 -0.0015 13 6 6.3828 -4.6720 1.1878 14 6 6.8460 -5.9795 1.2047 15 6 6.9841 -6.6826 0.0282 16 6 6.6559 -6.0723 -1.1812 17 6 6.6762 -6.5003 -2.5852 18 6 6.2398 -5.4548 -3.3007 19 8 5.9509 -4.4245 -2.4867 20 6 6.1797 -4.7505 -1.1984 21 1 -0.4851 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8744 -0.6801 -0.8912 24 1 3.6578 -3.1506 -0.8907 25 1 3.6585 -3.1501 0.8892 26 1 5.9156 -2.1223 0.8873 27 1 5.9141 -2.1230 -0.8927 28 1 6.2788 -4.1300 2.1162 29 1 7.0994 -6.4481 2.1441 30 1 7.3452 -7.7004 0.0426 31 1 6.9807 -7.4643 -2.9651 32 1 6.1345 -5.4419 -4.3754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250067660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:28 Heat of formation + Delta-G solvation = 8.521205 kcal Electronic energy + Delta-G solvation = -15000.171707 eV Core-core repulsion = 12505.417692 eV Total energy + Delta-G solvation = -2494.754015 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.32594 -38.03185 -34.99541 -32.94879 -31.85375 -30.32439 -29.27926 -27.08592 -23.71719 -22.46208 -22.13980 -20.49739 -19.93831 -17.32821 -16.99388 -16.55954 -15.94560 -15.48427 -14.52042 -14.25387 -13.64873 -13.47302 -13.04026 -12.76013 -12.62473 -12.38534 -11.95118 -11.80078 -11.40744 -11.13513 -10.87140 -10.68070 -10.05903 -9.86617 -9.66477 -9.50466 -9.13648 -8.49581 -8.47971 -7.99547 -5.99903 -3.97423 0.99671 1.45698 2.41763 2.92279 3.33987 3.40831 3.45049 3.78627 4.49191 4.49255 4.68428 4.98274 5.10478 5.25708 5.34187 5.38412 5.48766 5.61987 5.70398 5.89347 5.96549 6.19707 6.32274 6.37593 6.46902 6.49669 6.72319 6.73752 6.76138 6.96897 7.27350 7.37442 7.49667 7.84529 8.59597 9.05616 9.62830 11.13783 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.036695 B = 0.005624 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.868509 B = 4977.378547 C = 5298.754011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.094 4.094 11 C -0.086 4.086 12 C -0.051 4.051 13 C -0.100 4.100 14 C -0.131 4.131 15 C -0.089 4.089 16 C -0.132 4.132 17 C -0.220 4.220 18 C 0.009 3.991 19 O -0.188 6.188 20 C 0.056 3.944 21 H 0.262 0.738 22 H 0.016 0.984 23 H 0.011 0.989 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.223 -12.123 -2.203 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.132 4.132 11 C -0.124 4.124 12 C -0.052 4.052 13 C -0.118 4.118 14 C -0.149 4.149 15 C -0.107 4.107 16 C -0.133 4.133 17 C -0.239 4.239 18 C -0.056 4.056 19 O -0.089 6.089 20 C 0.008 3.992 21 H 0.072 0.928 22 H 0.034 0.966 23 H 0.029 0.971 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.172 0.828 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 15.965 -11.737 -2.276 19.945 hybrid contribution 0.337 0.611 -0.159 0.716 sum 16.302 -11.126 -2.435 19.886 Atomic orbital electron populations 1.69924 1.06314 1.26799 1.51462 1.25038 0.94727 0.99167 0.94643 0.86767 0.80364 0.83595 0.78493 1.20324 1.21428 1.18982 1.21171 0.89607 0.94438 1.50454 0.91117 1.19591 0.97083 0.92253 0.96211 1.21438 0.90550 0.99880 1.01321 1.20801 0.98393 0.90461 1.02712 1.19077 1.00235 0.97432 0.88445 1.20872 0.99255 0.95036 0.96670 1.20979 1.01411 0.94718 0.97771 1.20408 1.00426 0.99504 0.90374 1.19949 1.04622 0.94539 0.94225 1.22454 1.09368 1.00820 0.91298 1.23979 0.99624 0.85645 0.96361 1.84072 1.71109 1.38716 1.14988 1.19468 1.01774 0.94109 0.83802 0.92809 0.96586 0.97055 0.92834 0.92615 0.90935 0.91245 0.84773 0.85546 0.85951 0.82793 0.77818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.35 4.04 -27.89 -0.11 -0.46 16 10 C -0.09 -1.98 5.13 -26.74 -0.14 -2.12 16 11 C -0.09 -1.49 5.35 -27.88 -0.15 -1.64 16 12 C -0.05 -0.82 5.14 -104.52 -0.54 -1.36 16 13 C -0.10 -1.37 9.64 -39.54 -0.38 -1.75 16 14 C -0.13 -1.56 10.03 -39.58 -0.40 -1.96 16 15 C -0.09 -1.10 10.10 -39.33 -0.40 -1.50 16 16 C -0.13 -1.89 6.40 -105.16 -0.67 -2.56 16 17 C -0.22 -2.58 11.14 -37.62 -0.42 -3.00 16 18 C 0.01 0.11 11.96 29.24 0.35 0.46 16 19 O -0.19 -3.00 10.58 3.84 0.04 -2.96 16 20 C 0.06 0.91 7.10 -38.49 -0.27 0.63 16 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 22 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 23 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 24 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 27 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.21 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -33.35 277.73 -7.38 -40.73 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.15 Total: -2.61 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -3.56 Total: -29.06 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.77 Total: -27.83 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.35 -7.38 -40.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250067660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.248 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds