Wall clock time and date at job start Sun Mar 29 2020 22:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.37856 * 120.02245 * 264.99977 * 12 11 10 14 14 C 1.38720 * 120.69186 * 179.97438 * 13 12 11 15 15 C 1.37758 * 120.27554 * 0.02562 * 14 13 12 16 16 C 1.39381 * 119.59901 * 0.02562 * 15 14 13 17 17 C 1.46793 * 134.34387 * 179.97438 * 16 15 14 18 18 C 1.33993 * 106.18459 * 179.97438 * 17 16 15 19 19 O 1.34441 * 110.15842 * 359.97438 * 18 17 16 20 20 C 1.34840 * 110.89957 * 359.73633 * 19 18 17 21 21 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 24 24 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 25 25 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 28 28 H 1.08002 * 119.65569 * 359.97438 * 13 12 11 29 29 H 1.07997 * 119.86315 * 180.02562 * 14 13 12 30 30 H 1.07999 * 120.20360 * 179.97438 * 15 14 13 31 31 H 1.07998 * 126.91008 * 0.02562 * 17 16 15 32 32 H 1.07998 * 124.91941 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0538 -4.0574 -0.0015 13 6 6.3828 -4.6720 1.1878 14 6 6.8460 -5.9795 1.2047 15 6 6.9841 -6.6826 0.0282 16 6 6.6559 -6.0723 -1.1812 17 6 6.6762 -6.5003 -2.5852 18 6 6.2398 -5.4548 -3.3007 19 8 5.9509 -4.4245 -2.4867 20 6 6.1797 -4.7505 -1.1984 21 1 -0.4851 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8744 -0.6801 -0.8912 24 1 3.6578 -3.1506 -0.8907 25 1 3.6585 -3.1501 0.8892 26 1 5.9156 -2.1223 0.8873 27 1 5.9141 -2.1230 -0.8927 28 1 6.2788 -4.1300 2.1162 29 1 7.0994 -6.4481 2.1441 30 1 7.3452 -7.7004 0.0426 31 1 6.9807 -7.4643 -2.9651 32 1 6.1345 -5.4419 -4.3754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250067660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:27 Heat of formation + Delta-G solvation = -11.062071 kcal Electronic energy + Delta-G solvation = -15001.020901 eV Core-core repulsion = 12505.417692 eV Total energy + Delta-G solvation = -2495.603210 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.32923 -39.09020 -36.57836 -34.74552 -33.28750 -31.73479 -30.27200 -28.72309 -25.33024 -23.60957 -23.16118 -22.09710 -21.30721 -18.92754 -18.32233 -17.85601 -17.02091 -16.53837 -16.27770 -15.87376 -14.98329 -14.82087 -14.61073 -14.11585 -13.94978 -13.53368 -13.35160 -13.18742 -12.83289 -12.64903 -12.44235 -12.15699 -11.79720 -11.49053 -11.39320 -11.36516 -10.88015 -10.77890 -9.50969 -9.01638 -8.30829 -6.35652 0.00443 0.43226 1.35436 1.37446 1.48486 1.50178 1.98861 2.35862 2.76479 3.04276 3.57684 3.71380 3.95681 4.08735 4.26306 4.39730 4.41569 4.47534 4.57818 4.64917 4.79176 4.84999 5.02354 5.02864 5.08359 5.31824 5.44321 5.48857 5.52029 5.56090 5.63921 5.65418 5.81129 6.25768 6.28716 6.71798 7.28959 8.86425 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.036695 B = 0.005624 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.868509 B = 4977.378547 C = 5298.754011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.025 0.975 9 C -0.010 4.010 10 C -0.084 4.084 11 C -0.074 4.074 12 C -0.083 4.083 13 C -0.102 4.102 14 C -0.130 4.130 15 C -0.088 4.088 16 C -0.152 4.152 17 C -0.220 4.220 18 C -0.001 4.001 19 O -0.220 6.220 20 C 0.021 3.979 21 H 0.267 0.733 22 H 0.028 0.972 23 H 0.016 0.984 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.187 0.813 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.703 -12.523 -1.866 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.044 0.956 9 C -0.048 4.048 10 C -0.121 4.121 11 C -0.111 4.111 12 C -0.083 4.083 13 C -0.120 4.120 14 C -0.148 4.148 15 C -0.105 4.105 16 C -0.153 4.153 17 C -0.239 4.239 18 C -0.065 4.065 19 O -0.122 6.122 20 C -0.026 4.026 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.169 0.831 29 H 0.179 0.821 30 H 0.171 0.829 31 H 0.204 0.796 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 18.461 -12.162 -1.940 22.191 hybrid contribution -0.491 0.582 -0.278 0.811 sum 17.970 -11.579 -2.217 21.492 Atomic orbital electron populations 1.70082 1.08415 1.28266 1.52642 1.26082 0.95682 1.03741 0.93901 0.85589 0.79610 0.77773 0.79272 1.19232 1.20641 1.16606 1.21515 0.92309 0.93010 1.50648 0.95623 1.19542 0.93759 0.94773 0.96702 1.21244 0.93713 0.97215 0.99957 1.20581 0.95041 0.92207 1.03254 1.19109 1.02648 0.96950 0.89628 1.21197 0.98425 0.95992 0.96416 1.21395 1.00186 0.93971 0.99217 1.20877 0.99078 1.00813 0.89761 1.20434 1.04684 0.94054 0.96111 1.22878 1.08831 1.02062 0.90098 1.24845 0.99013 0.84857 0.97755 1.84035 1.71961 1.40681 1.15483 1.19839 1.03188 0.95519 0.84079 0.92418 0.95391 0.96547 0.95076 0.93173 0.89159 0.91819 0.83129 0.82112 0.82856 0.79564 0.74058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 2 C 0.00 0.14 5.47 84.65 0.46 0.60 16 3 Si 0.96 45.46 27.47 68.60 1.88 47.35 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.54 -32.72 9.66 25.60 0.25 -32.48 16 8 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 9 C -0.01 -0.52 4.04 29.84 0.12 -0.40 16 10 C -0.08 -3.59 5.13 30.59 0.16 -3.44 16 11 C -0.07 -2.53 5.35 29.85 0.16 -2.37 16 12 C -0.08 -2.64 5.14 -19.80 -0.10 -2.74 16 13 C -0.10 -2.63 9.64 22.29 0.21 -2.42 16 14 C -0.13 -2.75 10.03 22.27 0.22 -2.53 16 15 C -0.09 -1.93 10.10 22.43 0.23 -1.71 16 16 C -0.15 -4.13 6.40 -20.21 -0.13 -4.26 16 17 C -0.22 -4.75 11.14 23.54 0.26 -4.48 16 18 C 0.00 -0.02 11.96 66.85 0.80 0.78 16 19 O -0.22 -7.11 10.58 -9.16 -0.10 -7.21 16 20 C 0.02 0.67 7.10 22.98 0.16 0.84 16 21 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 22 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 23 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.09 2.71 8.05 -2.39 -0.02 2.69 16 27 H 0.06 2.21 8.12 -2.39 -0.02 2.20 16 28 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.24 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -74.91 277.73 5.93 -68.97 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.04 Total: 6.96 kcal Atomic # 6 Polarization: -57.39 SS G_CDS: 2.81 Total: -54.59 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.30 Total: -61.48 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.10 Total: -7.21 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -74.91 5.93 -68.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250067660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.911 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds