Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48492 * 109.46986 * 240.00231 * 3 2 1 5 5 H 1.48498 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46936 * 120.00276 * 3 2 1 7 7 C 1.40346 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99686 * 179.97438 * 7 2 1 9 9 C 1.39902 * 120.00659 * 359.97438 * 7 2 1 10 10 N 1.32854 * 126.46532 * 359.97438 * 9 7 2 11 11 N 1.28681 * 109.00731 * 180.02562 * 10 9 7 12 12 C 1.31128 * 109.58969 * 0.02562 * 11 10 9 13 13 C 1.50699 * 126.05512 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47373 * 89.97526 * 13 12 11 15 15 C 1.38233 * 119.99762 * 269.72521 * 14 13 12 16 16 C 1.38236 * 119.99947 * 179.76287 * 15 14 13 17 17 C 1.38229 * 119.99857 * 0.51111 * 16 15 14 18 18 C 1.38240 * 120.00301 * 359.74336 * 17 16 15 19 19 C 1.38229 * 120.00183 * 89.99919 * 14 13 12 20 20 O 1.34309 * 107.88385 * 359.97438 * 12 11 10 21 21 H 0.97006 * 120.00156 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46543 * 209.97705 * 13 12 11 23 23 H 1.09002 * 109.46739 * 329.97189 * 13 12 11 24 24 H 1.08003 * 120.00083 * 359.97438 * 15 14 13 25 25 H 1.08006 * 120.00224 * 180.22712 * 16 15 14 26 26 H 1.08005 * 120.00116 * 179.72504 * 17 16 15 27 27 H 1.07996 * 120.00482 * 179.97438 * 18 17 16 28 28 H 1.07998 * 119.99946 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0939 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0079 -1.2155 -0.0005 8 1 3.0879 -1.2155 -0.0010 9 6 1.3084 -2.4271 -0.0005 10 7 -0.0117 -2.5768 0.0004 11 7 -0.2910 -3.8329 0.0006 12 6 0.8194 -4.5302 0.0004 13 6 0.9226 -6.0337 -0.0001 14 6 0.9563 -6.5345 -1.4210 15 6 -0.2222 -6.8516 -2.0701 16 6 -0.1917 -7.3064 -3.3752 17 6 1.0181 -7.4541 -4.0275 18 6 2.1970 -7.1421 -3.3765 19 6 2.1660 -6.6823 -2.0732 20 8 1.8485 -3.6672 -0.0006 21 1 -0.4851 0.8401 0.0004 22 1 1.8357 -6.3353 0.5133 23 1 0.0598 -6.4572 0.5141 24 1 -1.1671 -6.7408 -1.5589 25 1 -1.1127 -7.5506 -3.8837 26 1 1.0422 -7.8137 -5.0456 27 1 3.1422 -7.2579 -3.8860 28 1 3.0870 -6.4384 -1.5647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253477635.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = 39.790438 kcal Electronic energy + Delta-G solvation = -14864.783336 eV Core-core repulsion = 12267.844913 eV Total energy + Delta-G solvation = -2596.938423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.67110 -38.91571 -34.13453 -33.80828 -33.05620 -30.63714 -29.59074 -27.45769 -24.97023 -22.35000 -21.58643 -21.46562 -20.14276 -17.70265 -16.58231 -15.58801 -15.38809 -14.95555 -14.80505 -14.52681 -13.60663 -13.40248 -13.15154 -12.86066 -12.17853 -11.90540 -11.66799 -11.39226 -11.06149 -10.92842 -10.73374 -10.57165 -10.33449 -9.78072 -9.61730 -8.76302 -8.66375 -8.44577 -7.87175 -6.85003 -4.87126 1.57808 1.65981 2.81809 2.98262 3.02073 3.21736 3.73807 3.98322 4.24818 4.47033 5.08693 5.10069 5.15266 5.23126 5.38502 5.51545 5.75035 5.84237 6.00116 6.10674 6.26214 6.33315 6.69343 6.72483 6.74351 6.90728 7.02668 7.24085 7.38715 7.54458 8.04395 8.28348 8.53028 10.07603 10.55564 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.041518 B = 0.006107 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.246294 B = 4583.942326 C = 4740.075095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.934 3.066 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.425 4.425 8 H 0.095 0.905 9 C 0.290 3.710 10 N -0.360 5.360 11 N -0.272 5.272 12 C 0.013 3.987 13 C 0.042 3.958 14 C -0.073 4.073 15 C -0.103 4.103 16 C -0.123 4.123 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.110 4.110 20 O -0.272 6.272 21 H 0.285 0.715 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -9.009 -3.933 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.154 4.154 3 Si 0.756 3.244 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.461 4.461 8 H 0.113 0.887 9 C 0.106 3.894 10 N -0.215 5.215 11 N -0.123 5.123 12 C -0.197 4.197 13 C 0.004 3.996 14 C -0.074 4.074 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.128 4.128 20 O -0.161 6.161 21 H 0.097 0.903 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.143 0.857 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.929 -8.586 -3.919 9.633 hybrid contribution 1.641 0.560 -0.101 1.737 sum 3.570 -8.026 -4.021 9.661 Atomic orbital electron populations 1.69931 1.07326 1.29565 1.27900 1.25947 0.95114 1.01093 0.93262 0.85954 0.79624 0.78641 0.80140 1.18588 1.19786 1.18577 1.18188 0.94702 0.85685 1.47537 0.88710 1.23751 0.89058 0.83099 0.93520 1.75716 1.10141 1.04245 1.31384 1.74098 1.25398 1.00642 1.12148 1.26133 0.82701 0.93823 1.17087 1.18463 1.03800 0.84364 0.93022 1.19893 0.93405 0.97631 0.96438 1.21109 0.97996 0.98158 0.94863 1.21101 0.97751 1.00355 0.94947 1.21077 0.92805 1.01231 0.99591 1.21074 0.98067 1.00152 0.94932 1.21082 0.97666 0.99038 0.95003 1.84677 1.38008 1.17331 1.76060 0.90336 0.89844 0.88495 0.85707 0.86305 0.86543 0.86377 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.76 11.93 55.57 0.66 -19.10 15 2 C 0.07 1.85 5.50 -17.27 -0.10 1.76 15 3 Si 0.93 18.36 29.56 -169.99 -5.03 13.33 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 15 7 C -0.43 -11.71 9.46 -38.17 -0.36 -12.07 15 8 H 0.09 2.38 7.85 -52.48 -0.41 1.97 15 9 C 0.29 8.59 7.85 -16.49 -0.13 8.46 15 10 N -0.36 -11.10 10.52 30.64 0.32 -10.78 15 11 N -0.27 -7.61 12.25 32.68 0.40 -7.21 15 12 C 0.01 0.33 7.71 -12.58 -0.10 0.24 15 13 C 0.04 0.76 5.97 -29.04 -0.17 0.59 15 14 C -0.07 -1.25 5.12 -104.63 -0.54 -1.78 15 15 C -0.10 -1.66 9.70 -39.58 -0.38 -2.05 15 16 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 15 17 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 15 18 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 15 19 C -0.11 -1.74 9.70 -39.58 -0.38 -2.13 15 20 O -0.27 -7.44 10.90 3.00 0.03 -7.41 15 21 H 0.29 6.93 8.29 -40.82 -0.34 6.60 15 22 H 0.08 1.31 8.09 -51.93 -0.42 0.89 15 23 H 0.10 1.55 8.08 -51.93 -0.42 1.13 15 24 H 0.12 1.91 8.06 -52.48 -0.42 1.49 15 25 H 0.12 1.38 8.06 -52.48 -0.42 0.96 15 26 H 0.12 1.24 8.06 -52.48 -0.42 0.81 15 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.12 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 260.24 15.07 3.92 3.92 Total: -1.00 -32.95 260.24 -5.54 -38.49 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -2.50 Total: 2.17 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -3.35 Total: -13.41 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 1.39 Total: -37.09 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.03 Total: -7.41 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.95 -5.54 -38.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253477635.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.276 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds