Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48492 * 109.46986 * 240.00231 * 3 2 1 5 5 H 1.48498 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46936 * 120.00276 * 3 2 1 7 7 C 1.40346 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99686 * 179.97438 * 7 2 1 9 9 C 1.39902 * 120.00659 * 359.97438 * 7 2 1 10 10 N 1.32854 * 126.46532 * 359.97438 * 9 7 2 11 11 N 1.28681 * 109.00731 * 180.02562 * 10 9 7 12 12 C 1.31128 * 109.58969 * 0.02562 * 11 10 9 13 13 C 1.50699 * 126.05512 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47373 * 89.97526 * 13 12 11 15 15 C 1.38233 * 119.99762 * 269.72521 * 14 13 12 16 16 C 1.38236 * 119.99947 * 179.76287 * 15 14 13 17 17 C 1.38229 * 119.99857 * 0.51111 * 16 15 14 18 18 C 1.38240 * 120.00301 * 359.74336 * 17 16 15 19 19 C 1.38229 * 120.00183 * 89.99919 * 14 13 12 20 20 O 1.34309 * 107.88385 * 359.97438 * 12 11 10 21 21 H 0.97006 * 120.00156 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46543 * 209.97705 * 13 12 11 23 23 H 1.09002 * 109.46739 * 329.97189 * 13 12 11 24 24 H 1.08003 * 120.00083 * 359.97438 * 15 14 13 25 25 H 1.08006 * 120.00224 * 180.22712 * 16 15 14 26 26 H 1.08005 * 120.00116 * 179.72504 * 17 16 15 27 27 H 1.07996 * 120.00482 * 179.97438 * 18 17 16 28 28 H 1.07998 * 119.99946 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0939 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0079 -1.2155 -0.0005 8 1 3.0879 -1.2155 -0.0010 9 6 1.3084 -2.4271 -0.0005 10 7 -0.0117 -2.5768 0.0004 11 7 -0.2910 -3.8329 0.0006 12 6 0.8194 -4.5302 0.0004 13 6 0.9226 -6.0337 -0.0001 14 6 0.9563 -6.5345 -1.4210 15 6 -0.2222 -6.8516 -2.0701 16 6 -0.1917 -7.3064 -3.3752 17 6 1.0181 -7.4541 -4.0275 18 6 2.1970 -7.1421 -3.3765 19 6 2.1660 -6.6823 -2.0732 20 8 1.8485 -3.6672 -0.0006 21 1 -0.4851 0.8401 0.0004 22 1 1.8357 -6.3353 0.5133 23 1 0.0598 -6.4572 0.5141 24 1 -1.1671 -6.7408 -1.5589 25 1 -1.1127 -7.5506 -3.8837 26 1 1.0422 -7.8137 -5.0456 27 1 3.1422 -7.2579 -3.8860 28 1 3.0870 -6.4384 -1.5647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253477635.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = 15.445435 kcal Electronic energy + Delta-G solvation = -14865.839015 eV Core-core repulsion = 12267.844913 eV Total energy + Delta-G solvation = -2597.994101 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.76327 -40.08499 -36.15123 -35.85664 -34.51163 -31.77236 -31.45630 -29.12118 -26.82440 -23.76603 -23.32667 -23.12569 -21.78531 -19.72237 -17.84155 -17.58265 -17.25344 -16.56434 -16.06203 -15.92429 -15.36359 -15.21715 -14.27531 -14.09716 -13.61809 -13.42345 -13.23485 -13.03182 -12.94932 -12.49823 -12.10932 -12.07421 -11.91057 -11.86111 -11.42203 -10.82511 -10.00302 -9.81143 -9.65375 -8.77401 -6.98375 0.37125 0.51069 0.97576 1.37281 1.55781 1.56328 2.08257 2.22335 2.44314 2.94221 3.06163 3.82823 3.88170 4.06692 4.16891 4.29855 4.39334 4.58607 4.67987 4.72162 4.76889 5.04034 5.07933 5.15931 5.31317 5.56171 5.59359 5.60580 5.73112 5.99008 6.12823 6.20674 6.48323 8.18968 8.44412 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.041518 B = 0.006107 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.246294 B = 4583.942326 C = 4740.075095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.025 3.975 3 Si 1.023 2.977 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.249 1.249 7 C -0.451 4.451 8 H 0.111 0.889 9 C 0.258 3.742 10 N -0.408 5.408 11 N -0.311 5.311 12 C 0.041 3.959 13 C 0.043 3.957 14 C -0.099 4.099 15 C -0.122 4.122 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.127 4.127 19 C -0.125 4.125 20 O -0.282 6.282 21 H 0.296 0.704 22 H 0.108 0.892 23 H 0.115 0.885 24 H 0.122 0.878 25 H 0.144 0.856 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -9.111 -5.086 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.197 4.197 3 Si 0.839 3.161 4 H -0.174 1.174 5 H -0.185 1.185 6 H -0.173 1.173 7 C -0.486 4.486 8 H 0.129 0.871 9 C 0.073 3.927 10 N -0.262 5.262 11 N -0.159 5.159 12 C -0.172 4.172 13 C 0.005 3.995 14 C -0.100 4.100 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.142 4.142 18 C -0.145 4.145 19 C -0.143 4.143 20 O -0.172 6.172 21 H 0.107 0.893 22 H 0.126 0.874 23 H 0.133 0.867 24 H 0.141 0.859 25 H 0.162 0.838 26 H 0.168 0.832 27 H 0.164 0.836 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.324 -8.722 -5.070 10.622 hybrid contribution 1.186 0.417 0.200 1.273 sum 4.511 -8.305 -4.870 10.632 Atomic orbital electron populations 1.70034 1.09612 1.31480 1.28161 1.27276 0.95958 1.04910 0.91542 0.84672 0.78116 0.72474 0.80823 1.17405 1.18539 1.17280 1.18852 0.95781 0.86091 1.47897 0.87096 1.24328 0.89345 0.84254 0.94782 1.75612 1.11050 1.05617 1.33916 1.73985 1.26780 1.00343 1.14830 1.27476 0.81463 0.95976 1.12328 1.18803 1.05916 0.79842 0.94934 1.19853 0.94503 0.99675 0.95926 1.21284 0.97677 0.98951 0.96056 1.21458 0.99434 0.99532 0.94230 1.21532 0.92109 0.99650 1.00955 1.21460 0.99754 0.99071 0.94240 1.21300 0.97395 0.99513 0.96117 1.84685 1.38816 1.17309 1.76348 0.89333 0.87360 0.86717 0.85948 0.83824 0.83170 0.83588 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.88 11.93 21.90 0.26 -42.62 15 2 C 0.03 1.30 5.50 85.39 0.47 1.77 15 3 Si 1.02 36.74 29.56 68.60 2.03 38.76 15 4 H -0.25 -8.50 7.11 99.48 0.71 -7.79 15 5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 6 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 7 C -0.45 -25.21 9.46 23.19 0.22 -25.00 15 8 H 0.11 5.59 7.85 -2.91 -0.02 5.56 15 9 C 0.26 15.75 7.85 84.94 0.67 16.42 15 10 N -0.41 -26.17 10.52 -169.76 -1.79 -27.96 15 11 N -0.31 -18.08 12.25 -164.71 -2.02 -20.09 15 12 C 0.04 2.05 7.71 88.21 0.68 2.73 15 13 C 0.04 1.55 5.97 29.10 0.17 1.72 15 14 C -0.10 -3.32 5.12 -19.87 -0.10 -3.42 15 15 C -0.12 -3.84 9.70 22.27 0.22 -3.62 15 16 C -0.13 -3.38 10.05 22.27 0.22 -3.16 15 17 C -0.12 -2.96 10.05 22.27 0.22 -2.74 15 18 C -0.13 -3.25 10.05 22.27 0.22 -3.02 15 19 C -0.13 -3.82 9.70 22.27 0.22 -3.60 15 20 O -0.28 -15.79 10.90 -12.20 -0.13 -15.92 15 21 H 0.30 14.56 8.29 -92.70 -0.77 13.79 15 22 H 0.11 3.28 8.09 -2.39 -0.02 3.26 15 23 H 0.11 3.64 8.08 -2.39 -0.02 3.62 15 24 H 0.12 3.78 8.06 -2.91 -0.02 3.76 15 25 H 0.14 2.96 8.06 -2.91 -0.02 2.94 15 26 H 0.15 2.53 8.06 -2.91 -0.02 2.50 15 27 H 0.15 2.83 8.06 -2.91 -0.02 2.81 15 28 H 0.13 3.59 8.06 -2.91 -0.02 3.56 15 Total: -1.00 -74.26 260.24 2.74 -71.53 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.17 Total: 18.22 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.21 Total: -21.91 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -3.54 Total: -90.67 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.13 Total: -15.92 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.76 kcal Total: -74.26 2.74 -71.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253477635.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.972 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds