Wall clock time and date at job start Sun Mar 29 2020 21:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.47116 * 304.00058 * 3 2 1 5 5 C 1.50702 * 109.47000 * 184.00237 * 3 2 1 6 6 H 1.07998 * 120.00163 * 239.99836 * 5 3 2 7 7 C 1.37884 * 119.99793 * 59.99897 * 5 3 2 8 8 N 1.31513 * 120.00252 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47040 * 89.99881 * 9 7 5 11 11 H 1.48502 * 109.47044 * 210.00069 * 9 7 5 12 12 H 1.48501 * 109.46991 * 329.99648 * 9 7 5 13 13 N 1.46900 * 109.47242 * 64.00407 * 3 2 1 14 14 C 1.46900 * 110.99940 * 203.92540 * 13 3 2 15 15 C 1.52997 * 109.47650 * 85.44429 * 14 13 3 16 16 C 1.52993 * 109.47297 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47294 * 300.00107 * 16 15 14 18 18 F 1.39901 * 109.47042 * 299.99899 * 17 16 15 19 19 C 1.52997 * 109.47036 * 59.99733 * 17 16 15 20 20 C 1.52993 * 109.47297 * 300.00265 * 19 17 16 21 21 H 1.08997 * 109.47421 * 294.92337 * 1 2 3 22 22 H 1.09002 * 109.47073 * 54.92804 * 1 2 3 23 23 H 1.09002 * 109.47228 * 174.92607 * 1 2 3 24 24 H 1.09002 * 109.47214 * 239.99939 * 2 1 3 25 25 H 1.08998 * 109.46671 * 120.00046 * 2 1 3 26 26 H 0.96993 * 120.00096 * 180.02562 * 8 7 5 27 27 H 1.00893 * 111.00400 * 79.96703 * 13 3 2 28 28 H 1.08999 * 109.47006 * 325.44230 * 14 13 3 29 29 H 1.08999 * 109.47079 * 59.99845 * 15 14 13 30 30 H 1.09006 * 109.47204 * 300.00344 * 15 14 13 31 31 H 1.09007 * 109.46966 * 179.97438 * 16 15 14 32 32 H 1.08995 * 109.47347 * 60.00387 * 16 15 14 33 33 H 1.08997 * 109.47085 * 179.97438 * 17 16 15 34 34 H 1.09008 * 109.46852 * 60.00382 * 19 17 16 35 35 H 1.09006 * 109.47204 * 179.97438 * 19 17 16 36 36 H 1.09007 * 109.46966 * 180.02562 * 20 19 17 37 37 H 1.08995 * 109.47347 * 299.99613 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 -0.8520 5 6 3.5437 1.4437 -0.0992 6 1 4.1362 1.8928 0.6842 7 6 4.1631 0.8714 -1.1900 8 7 3.4416 0.3249 -2.1442 9 14 6.0271 0.8722 -1.3126 10 1 6.5656 -0.3562 -0.6752 11 1 6.4291 0.9053 -2.7418 12 1 6.5682 2.0682 -0.6184 13 7 1.6309 2.1065 1.2448 14 6 1.5795 3.5644 1.0716 15 6 0.2170 3.9626 0.5009 16 6 0.1634 5.4810 0.3210 17 6 0.3679 6.1625 1.6754 18 9 -0.6420 5.7614 2.5565 19 6 1.7305 5.7643 2.2462 20 6 1.7841 4.2459 2.4260 21 1 -0.3634 0.4330 0.9319 22 1 -0.3633 0.5905 -0.8411 23 1 -0.3634 -1.0236 -0.0909 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8773 -0.0780 -2.9114 27 1 2.2420 1.8543 2.0070 28 1 2.3664 3.8765 0.3849 29 1 -0.5698 3.6504 1.1875 30 1 0.0711 3.4767 -0.4639 31 1 -0.8072 5.7646 -0.0860 32 1 0.9502 5.7936 -0.3655 33 1 0.3302 7.2443 1.5472 34 1 2.5174 6.0769 1.5596 35 1 1.8764 6.2502 3.2109 36 1 2.7547 3.9623 2.8330 37 1 0.9973 3.9334 3.1125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255148993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:51 Heat of formation + Delta-G solvation = -97.723635 kcal Electronic energy + Delta-G solvation = -16959.004858 eV Core-core repulsion = 14262.426253 eV Total energy + Delta-G solvation = -2696.578605 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.51931 -39.40521 -36.91839 -34.08569 -32.76075 -31.77875 -29.64250 -27.52546 -24.70721 -23.74568 -22.53539 -21.25251 -20.42869 -18.60976 -17.39464 -16.81382 -16.41357 -16.21436 -16.17583 -15.38515 -14.76851 -14.60902 -14.31483 -13.89628 -13.61436 -13.31090 -13.15166 -13.08377 -12.93510 -12.72257 -12.60179 -12.41950 -12.13147 -11.90838 -11.70446 -11.50767 -11.43839 -11.15209 -10.90726 -10.78765 -10.44705 -9.01426 -8.04480 -6.27159 1.37413 1.39031 1.47660 2.39706 3.14396 3.49768 3.64779 3.75402 3.96099 4.14850 4.21743 4.33972 4.46690 4.56864 4.58202 4.62357 4.75682 4.86131 4.91784 5.04572 5.06404 5.09856 5.20229 5.24105 5.30988 5.37873 5.42391 5.49797 5.57049 5.66863 5.79310 6.12357 6.22635 6.43857 6.87144 7.04888 7.44487 8.91555 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.007818 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.560953 B = 3580.643468 C = 4122.187073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.000 1.000 5 C -0.557 4.557 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.681 5.681 14 C 0.093 3.907 15 C -0.100 4.100 16 C -0.142 4.142 17 C 0.093 3.907 18 F -0.227 7.227 19 C -0.139 4.139 20 C -0.114 4.114 21 H 0.055 0.945 22 H 0.029 0.971 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.328 0.672 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 10.427 6.375 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.597 4.597 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.310 5.310 14 C -0.017 4.017 15 C -0.138 4.138 16 C -0.180 4.180 17 C 0.057 3.943 18 F -0.208 7.208 19 C -0.177 4.177 20 C -0.152 4.152 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.831 10.233 6.100 12.856 hybrid contribution 1.972 -0.287 -0.495 2.053 sum -2.859 9.947 5.605 11.770 Atomic orbital electron populations 1.21534 0.96508 0.99403 1.00510 1.21376 0.94304 0.98665 0.99914 1.18905 0.91272 0.91204 0.86969 0.98221 1.22180 0.94074 1.37621 1.05791 0.93272 1.25676 1.02133 0.94854 0.95443 1.70009 1.36442 1.38594 1.10006 0.85689 0.81111 0.78469 0.77144 1.20225 1.20956 1.19568 1.60850 1.56026 1.06569 1.07528 1.21372 0.95801 0.88433 0.96124 1.21382 0.97228 0.95255 0.99968 1.22132 1.03800 0.95042 0.97057 1.21715 0.84942 1.00309 0.87358 1.92758 1.63425 1.93057 1.71608 1.22105 0.96806 0.95671 1.03124 1.21602 1.01743 0.95485 0.96373 0.92588 0.95180 0.93806 0.92164 0.95471 0.92935 0.85560 0.96165 0.92195 0.94191 0.89892 0.89796 0.87067 0.89516 0.89199 0.92001 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.73 71.98 0.70 -4.39 16 2 C -0.10 -5.10 5.44 30.59 0.17 -4.93 16 3 C 0.23 11.32 1.80 44.17 0.08 11.40 16 4 H 0.00 -0.01 7.15 -2.39 -0.02 -0.03 16 5 C -0.56 -30.24 8.21 25.60 0.21 -30.03 16 6 H 0.05 2.63 7.76 -2.91 -0.02 2.61 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -52.32 11.30 21.45 0.24 -52.08 16 9 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.68 -28.72 5.55 -473.32 -2.63 -31.35 16 14 C 0.09 3.42 2.30 44.91 0.10 3.53 16 15 C -0.10 -3.40 5.29 30.59 0.16 -3.24 16 16 C -0.14 -3.63 5.72 30.59 0.17 -3.46 16 17 C 0.09 2.08 4.12 30.59 0.13 2.20 16 18 F -0.23 -6.26 16.04 44.97 0.72 -5.53 16 19 C -0.14 -3.17 5.72 30.59 0.17 -3.00 16 20 C -0.11 -3.37 5.07 30.59 0.15 -3.22 16 21 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 3.32 5.97 -2.39 -0.01 3.30 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.33 13.65 8.06 -89.70 -0.72 12.92 16 28 H 0.02 0.86 7.59 -2.39 -0.02 0.84 16 29 H 0.06 2.09 7.80 -2.39 -0.02 2.07 16 30 H 0.04 1.53 7.45 -2.38 -0.02 1.52 16 31 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.06 1.81 8.12 -2.38 -0.02 1.79 16 37 H 0.07 2.01 7.80 -2.39 -0.02 1.99 16 Total: -1.00 -59.38 291.47 3.17 -56.21 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.31 Total: 21.06 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.50 Total: -33.64 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.39 Total: -83.43 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.72 Total: -5.53 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -59.38 3.17 -56.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255148993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.513 kcal (2) G-P(sol) polarization free energy of solvation -59.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds