Wall clock time and date at job start Sun Mar 29 2020 21:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47689 * 2 1 4 4 H 1.08996 * 109.47806 * 185.16045 * 3 2 1 5 5 C 1.50698 * 109.47080 * 305.16870 * 3 2 1 6 6 H 1.07999 * 120.00483 * 119.99805 * 5 3 2 7 7 C 1.37877 * 119.99883 * 299.99583 * 5 3 2 8 8 N 1.31515 * 120.00017 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00190 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47420 * 59.99527 * 9 7 5 11 11 H 1.48505 * 109.47413 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47221 * 299.99536 * 9 7 5 13 13 N 1.46905 * 109.46846 * 65.16228 * 3 2 1 14 14 C 1.46894 * 111.00096 * 85.95157 * 13 3 2 15 15 C 1.52997 * 109.47620 * 174.59089 * 14 13 3 16 16 H 1.09002 * 110.53815 * 307.61167 * 15 14 13 17 17 C 1.54261 * 110.48996 * 185.00094 * 15 14 13 18 18 C 1.53877 * 106.60000 * 217.70903 * 17 15 14 19 19 C 1.54263 * 106.59632 * 359.97438 * 18 17 15 20 20 H 1.09009 * 110.48662 * 142.41910 * 19 18 17 21 21 F 1.39901 * 110.48678 * 264.92896 * 19 18 17 22 22 C 1.54890 * 104.19938 * 23.61257 * 19 18 17 23 23 H 1.08996 * 109.46717 * 54.84712 * 1 2 3 24 24 H 1.08994 * 109.47008 * 174.84915 * 1 2 3 25 25 H 1.09001 * 109.47013 * 294.84698 * 1 2 3 26 26 H 1.09005 * 109.46883 * 240.00157 * 2 1 3 27 27 H 1.09000 * 109.46850 * 120.00589 * 2 1 3 28 28 H 0.96998 * 120.00392 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00119 * 322.00015 * 13 3 2 30 30 H 1.08998 * 109.47068 * 54.58516 * 14 13 3 31 31 H 1.09003 * 109.47096 * 294.58903 * 14 13 3 32 32 H 1.09002 * 110.03648 * 98.42551 * 17 15 14 33 33 H 1.09004 * 110.03397 * 336.99674 * 17 15 14 34 34 H 1.09000 * 110.03213 * 119.28125 * 18 17 15 35 35 H 1.08999 * 110.03122 * 240.71216 * 18 17 15 36 36 H 1.08995 * 110.75829 * 80.36819 * 22 19 18 37 37 H 1.08997 * 110.76059 * 203.56212 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 3.1262 1.4438 -0.0924 5 6 1.4361 2.1888 -1.1614 6 1 0.8270 3.0628 -0.9837 7 6 1.6611 1.7560 -2.4510 8 7 2.4032 0.6921 -2.6676 9 14 0.9130 2.6816 -3.8908 10 1 1.4085 4.0815 -3.8906 11 1 1.3027 2.0192 -5.1615 12 1 -0.5667 2.6803 -3.7651 13 7 1.6549 2.0980 1.2569 14 6 2.6440 1.8375 2.3113 15 6 2.2817 2.6425 3.5608 16 1 2.1422 3.6943 3.3110 17 6 3.3723 2.4841 4.6402 18 6 2.6447 2.4236 5.9948 19 6 1.1373 2.5479 5.6912 20 1 0.5599 1.9065 6.3571 21 9 0.7216 3.8782 5.8123 22 6 1.0046 2.0698 4.2239 23 1 -0.3632 0.5917 -0.8402 24 1 -0.3633 -1.0235 -0.0923 25 1 -0.3633 0.4318 0.9326 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5618 0.3878 -3.5748 29 1 0.7326 1.8097 1.5473 30 1 3.6333 2.1335 1.9625 31 1 2.6468 0.7744 2.5522 32 1 4.0476 3.3395 4.6171 33 1 3.9305 1.5627 4.4747 34 1 2.8497 1.4726 6.4865 35 1 2.9669 3.2495 6.6289 36 1 0.9976 0.9812 4.1714 37 1 0.1077 2.4831 3.7625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:01 Heat of formation + Delta-G solvation = -77.206761 kcal Electronic energy + Delta-G solvation = -16531.977447 eV Core-core repulsion = 13836.288520 eV Total energy + Delta-G solvation = -2695.688927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.51850 -38.01762 -35.97484 -32.56385 -30.85316 -28.62246 -28.47346 -26.06387 -23.46598 -22.92371 -20.59863 -19.70570 -19.20233 -16.59573 -16.06698 -15.77578 -15.23723 -14.69318 -14.57026 -13.93197 -13.55400 -13.32145 -12.88550 -12.63448 -12.24039 -12.09322 -11.73869 -11.45012 -11.20072 -10.86872 -10.83787 -10.78508 -10.56076 -10.51914 -10.30739 -10.24682 -9.90901 -9.65827 -9.52217 -8.94617 -8.31297 -7.15642 -5.94572 -3.95954 3.36358 3.40447 3.44109 4.37427 4.45072 4.47789 4.69585 4.81222 5.23350 5.36499 5.36996 5.42749 5.49716 5.65500 5.73498 5.85811 5.94451 6.01594 6.13383 6.24319 6.31887 6.35329 6.38959 6.51447 6.60327 6.68982 6.90741 7.30344 7.33312 7.54182 7.72505 7.92693 8.32702 8.60576 8.67548 9.09783 9.67651 11.12451 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041374 B = 0.005705 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.590983 B = 4906.654488 C = 4997.427735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.069 3.931 15 C -0.088 4.088 16 H 0.085 0.915 17 C -0.120 4.120 18 C -0.148 4.148 19 C 0.082 3.918 20 H 0.082 0.918 21 F -0.212 7.212 22 C -0.144 4.144 23 H 0.069 0.931 24 H 0.023 0.977 25 H 0.026 0.974 26 H 0.092 0.908 27 H 0.009 0.991 28 H 0.259 0.741 29 H 0.325 0.675 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 0.025 14.314 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.107 4.107 16 H 0.103 0.897 17 C -0.158 4.158 18 C -0.186 4.186 19 C 0.046 3.954 20 H 0.100 0.900 21 F -0.193 7.193 22 C -0.182 4.182 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.256 0.562 13.976 13.990 hybrid contribution -0.548 -0.536 -0.611 0.980 sum -0.804 0.026 13.365 13.390 Atomic orbital electron populations 1.21597 0.97725 0.98620 1.00767 1.22100 0.94976 1.01217 1.00143 1.19207 0.95864 0.88526 0.85704 0.95090 1.21055 1.30463 1.11445 0.89734 0.92104 1.24916 0.95583 0.95179 0.98721 1.69872 1.39070 1.24063 1.20730 0.86634 0.79543 0.80011 0.81623 1.20359 1.21540 1.20397 1.60790 1.03846 1.63201 1.03722 1.21900 0.97348 0.95614 0.91246 1.22045 0.93115 1.01260 0.94244 0.89685 1.22180 0.98156 1.02189 0.93314 1.22751 0.94159 1.02902 0.98775 1.22382 0.95629 0.78666 0.98731 0.89972 1.92801 1.91663 1.37694 1.97146 1.23156 1.00126 1.01453 0.93478 0.91205 0.95829 0.95457 0.88974 0.97200 0.93113 0.85671 0.91740 0.96517 0.91550 0.91415 0.90478 0.90778 0.90119 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.40 37.16 0.35 -2.42 16 2 C -0.14 -3.39 5.51 -26.73 -0.15 -3.53 16 3 C 0.21 5.31 2.33 -68.87 -0.16 5.15 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.49 -13.28 7.25 -34.44 -0.25 -13.53 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.42 11.38 55.43 0.63 -24.79 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.69 -14.40 6.21 -107.96 -0.67 -15.07 16 14 C 0.07 1.22 4.84 -3.83 -0.02 1.20 16 15 C -0.09 -1.28 3.09 -88.98 -0.27 -1.55 16 16 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 17 C -0.12 -1.43 6.37 -25.61 -0.16 -1.60 16 18 C -0.15 -1.53 6.61 -25.61 -0.17 -1.70 16 19 C 0.08 0.94 4.66 -25.07 -0.12 0.83 16 20 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 21 F -0.21 -2.99 17.17 2.25 0.04 -2.95 16 22 C -0.14 -1.87 5.55 -24.75 -0.14 -2.01 16 23 H 0.07 1.64 6.85 -51.93 -0.36 1.29 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.52 6.63 -51.93 -0.34 0.17 16 26 H 0.09 2.42 6.23 -51.93 -0.32 2.10 16 27 H 0.01 0.20 7.51 -51.93 -0.39 -0.19 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.52 6.14 -39.29 -0.24 6.28 16 30 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 31 H 0.02 0.29 7.42 -51.93 -0.39 -0.09 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 291.80 15.07 4.40 4.40 Total: -1.00 -28.02 291.80 -7.98 -36.01 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.17 Total: 3.66 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.18 Total: -17.70 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.04 Total: -39.86 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.02 -7.98 -36.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.201 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds