Wall clock time and date at job start Sun Mar 29 2020 21:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47689 * 2 1 4 4 H 1.08996 * 109.47806 * 185.16045 * 3 2 1 5 5 C 1.50698 * 109.47080 * 305.16870 * 3 2 1 6 6 H 1.07999 * 120.00483 * 119.99805 * 5 3 2 7 7 C 1.37877 * 119.99883 * 299.99583 * 5 3 2 8 8 N 1.31515 * 120.00017 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00190 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47420 * 59.99527 * 9 7 5 11 11 H 1.48505 * 109.47413 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47221 * 299.99536 * 9 7 5 13 13 N 1.46905 * 109.46846 * 65.16228 * 3 2 1 14 14 C 1.46894 * 111.00096 * 85.95157 * 13 3 2 15 15 C 1.52997 * 109.47620 * 174.59089 * 14 13 3 16 16 H 1.09002 * 110.53815 * 307.61167 * 15 14 13 17 17 C 1.54261 * 110.48996 * 185.00094 * 15 14 13 18 18 C 1.53877 * 106.60000 * 217.70903 * 17 15 14 19 19 C 1.54263 * 106.59632 * 359.97438 * 18 17 15 20 20 H 1.09009 * 110.48662 * 142.41910 * 19 18 17 21 21 F 1.39901 * 110.48678 * 264.92896 * 19 18 17 22 22 C 1.54890 * 104.19938 * 23.61257 * 19 18 17 23 23 H 1.08996 * 109.46717 * 54.84712 * 1 2 3 24 24 H 1.08994 * 109.47008 * 174.84915 * 1 2 3 25 25 H 1.09001 * 109.47013 * 294.84698 * 1 2 3 26 26 H 1.09005 * 109.46883 * 240.00157 * 2 1 3 27 27 H 1.09000 * 109.46850 * 120.00589 * 2 1 3 28 28 H 0.96998 * 120.00392 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00119 * 322.00015 * 13 3 2 30 30 H 1.08998 * 109.47068 * 54.58516 * 14 13 3 31 31 H 1.09003 * 109.47096 * 294.58903 * 14 13 3 32 32 H 1.09002 * 110.03648 * 98.42551 * 17 15 14 33 33 H 1.09004 * 110.03397 * 336.99674 * 17 15 14 34 34 H 1.09000 * 110.03213 * 119.28125 * 18 17 15 35 35 H 1.08999 * 110.03122 * 240.71216 * 18 17 15 36 36 H 1.08995 * 110.75829 * 80.36819 * 22 19 18 37 37 H 1.08997 * 110.76059 * 203.56212 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 3.1262 1.4438 -0.0924 5 6 1.4361 2.1888 -1.1614 6 1 0.8270 3.0628 -0.9837 7 6 1.6611 1.7560 -2.4510 8 7 2.4032 0.6921 -2.6676 9 14 0.9130 2.6816 -3.8908 10 1 1.4085 4.0815 -3.8906 11 1 1.3027 2.0192 -5.1615 12 1 -0.5667 2.6803 -3.7651 13 7 1.6549 2.0980 1.2569 14 6 2.6440 1.8375 2.3113 15 6 2.2817 2.6425 3.5608 16 1 2.1422 3.6943 3.3110 17 6 3.3723 2.4841 4.6402 18 6 2.6447 2.4236 5.9948 19 6 1.1373 2.5479 5.6912 20 1 0.5599 1.9065 6.3571 21 9 0.7216 3.8782 5.8123 22 6 1.0046 2.0698 4.2239 23 1 -0.3632 0.5917 -0.8402 24 1 -0.3633 -1.0235 -0.0923 25 1 -0.3633 0.4318 0.9326 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5618 0.3878 -3.5748 29 1 0.7326 1.8097 1.5473 30 1 3.6333 2.1335 1.9625 31 1 2.6468 0.7744 2.5522 32 1 4.0476 3.3395 4.6171 33 1 3.9305 1.5627 4.4747 34 1 2.8497 1.4726 6.4865 35 1 2.9669 3.2495 6.6289 36 1 0.9976 0.9812 4.1714 37 1 0.1077 2.4831 3.7625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:01 Heat of formation + Delta-G solvation = -93.263620 kcal Electronic energy + Delta-G solvation = -16532.673725 eV Core-core repulsion = 13836.288520 eV Total energy + Delta-G solvation = -2696.385204 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.50941 -39.29092 -37.59556 -34.40006 -32.59006 -29.96104 -29.50491 -27.92582 -25.27140 -24.42040 -21.63588 -21.00796 -20.83613 -18.22396 -17.39682 -16.95610 -16.69325 -16.51464 -15.64173 -15.30225 -15.17543 -14.72229 -14.38935 -14.23781 -13.76733 -13.46168 -13.31756 -12.93929 -12.75103 -12.45284 -12.37742 -12.19453 -11.87686 -11.83159 -11.66344 -11.54521 -11.45339 -11.33641 -11.18777 -10.90909 -10.42197 -8.88544 -8.04813 -6.13291 1.43952 1.44893 1.52403 2.46175 3.23592 3.41696 3.49438 3.67242 3.88210 3.98083 4.30624 4.46630 4.47449 4.52659 4.57533 4.60569 4.64927 4.75283 4.79073 4.89911 4.95057 5.02147 5.08160 5.11202 5.28667 5.37702 5.44157 5.45735 5.52130 5.71129 5.75418 5.86549 6.34055 6.72085 6.90209 7.01019 7.54656 9.00283 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041374 B = 0.005705 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.590983 B = 4906.654488 C = 4997.427735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 C 0.220 3.780 4 H -0.006 1.006 5 C -0.502 4.502 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.691 5.691 14 C 0.073 3.927 15 C -0.085 4.085 16 H 0.062 0.938 17 C -0.118 4.118 18 C -0.141 4.141 19 C 0.079 3.921 20 H 0.113 0.887 21 F -0.230 7.230 22 C -0.144 4.144 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.259 0.741 29 H 0.333 0.667 30 H 0.047 0.953 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 -0.359 15.838 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.111 3.889 4 H 0.012 0.988 5 C -0.541 4.541 6 H 0.068 0.932 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.322 5.322 14 C -0.057 4.057 15 C -0.104 4.104 16 H 0.081 0.919 17 C -0.157 4.157 18 C -0.179 4.179 19 C 0.043 3.957 20 H 0.130 0.870 21 F -0.211 7.211 22 C -0.181 4.181 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.151 0.849 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.985 0.183 15.518 15.551 hybrid contribution -0.285 -0.413 -1.067 1.180 sum -1.270 -0.229 14.451 14.508 Atomic orbital electron populations 1.21479 0.95908 0.99617 1.00833 1.21937 0.96517 0.99881 0.99370 1.18962 0.93416 0.89567 0.86924 0.98780 1.21283 1.30427 1.11352 0.91019 0.93165 1.25592 0.95953 0.95902 1.01007 1.70002 1.39940 1.25125 1.21081 0.85722 0.79069 0.78703 0.78772 1.20292 1.21140 1.19618 1.60661 1.04969 1.63026 1.03553 1.21916 0.95687 0.96613 0.91471 1.21940 0.95430 0.99355 0.93716 0.91927 1.22168 0.97472 1.02602 0.93409 1.22744 0.92836 1.04610 0.97693 1.22599 0.96966 0.78057 0.98063 0.86958 1.92772 1.91938 1.39210 1.97148 1.23144 0.98418 1.02069 0.94499 0.93766 0.93825 0.93198 0.92112 0.95491 0.93200 0.84866 0.93416 0.95697 0.91575 0.90684 0.87880 0.90214 0.88841 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.40 71.98 0.68 -4.33 16 2 C -0.14 -6.41 5.51 30.59 0.17 -6.24 16 3 C 0.22 11.08 2.33 44.17 0.10 11.18 16 4 H -0.01 -0.33 7.70 -2.39 -0.02 -0.35 16 5 C -0.50 -27.75 7.25 25.60 0.19 -27.57 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.75 5.28 84.65 0.45 1.20 16 8 N -0.92 -53.03 11.38 21.45 0.24 -52.78 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 N -0.69 -29.13 6.21 -495.47 -3.07 -32.21 16 14 C 0.07 2.54 4.84 86.30 0.42 2.96 16 15 C -0.09 -2.41 3.09 -9.73 -0.03 -2.44 16 16 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 17 C -0.12 -2.60 6.37 31.32 0.20 -2.40 16 18 C -0.14 -2.45 6.61 31.32 0.21 -2.25 16 19 C 0.08 1.59 4.66 31.67 0.15 1.73 16 20 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 21 F -0.23 -6.06 17.17 44.97 0.77 -5.29 16 22 C -0.14 -3.43 5.55 31.88 0.18 -3.25 16 23 H 0.04 2.05 6.85 -2.39 -0.02 2.03 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.81 6.63 -2.39 -0.02 1.79 16 26 H 0.06 3.24 6.23 -2.38 -0.01 3.22 16 27 H 0.03 1.13 7.51 -2.39 -0.02 1.11 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.33 13.07 6.14 -89.69 -0.55 12.52 16 30 H 0.05 1.80 7.92 -2.39 -0.02 1.78 16 31 H 0.02 0.83 7.42 -2.39 -0.02 0.82 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.54 7.84 -2.39 -0.02 1.53 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 36 H 0.09 2.00 7.97 -2.39 -0.02 1.98 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -60.67 291.80 3.15 -57.52 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.48 Total: 17.87 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 2.70 Total: -31.39 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -2.83 Total: -84.99 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.77 Total: -5.29 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -60.67 3.15 -57.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.746 kcal (2) G-P(sol) polarization free energy of solvation -60.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds