Wall clock time and date at job start Sun Mar 29 2020 21:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46995 * 2 1 4 4 H 1.09000 * 109.46825 * 305.66912 * 3 2 1 5 5 C 1.50694 * 109.47056 * 185.67169 * 3 2 1 6 6 H 1.08008 * 119.99291 * 244.40939 * 5 3 2 7 7 C 1.37875 * 120.00326 * 64.41634 * 5 3 2 8 8 N 1.31510 * 120.00086 * 7.57773 * 7 5 3 9 9 Si 1.86804 * 120.00017 * 187.58084 * 7 5 3 10 10 H 1.48490 * 109.46934 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46739 * 299.99739 * 9 7 5 12 12 H 1.48497 * 109.46958 * 59.99296 * 9 7 5 13 13 N 1.46894 * 109.46733 * 65.66668 * 3 2 1 14 14 C 1.46909 * 110.99933 * 201.15739 * 13 3 2 15 15 H 1.08998 * 109.46987 * 330.12000 * 14 13 3 16 16 C 1.53004 * 109.47041 * 210.11617 * 14 13 3 17 17 C 1.52995 * 109.46693 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47645 * 60.00135 * 17 16 14 19 19 C 1.53002 * 109.46882 * 300.00379 * 18 17 16 20 20 C 1.52993 * 109.47645 * 59.99289 * 19 18 17 21 21 H 1.08998 * 109.46885 * 59.99940 * 20 19 18 22 22 F 1.39897 * 109.47484 * 180.02562 * 20 19 18 23 23 H 1.09007 * 109.46717 * 184.55948 * 1 2 3 24 24 H 1.09002 * 109.47077 * 304.55772 * 1 2 3 25 25 H 1.08994 * 109.47239 * 64.55650 * 1 2 3 26 26 H 1.09000 * 109.47428 * 240.00681 * 2 1 3 27 27 H 1.08999 * 109.47502 * 119.99985 * 2 1 3 28 28 H 0.97007 * 120.00085 * 355.67770 * 8 7 5 29 29 H 1.00897 * 111.00943 * 325.11270 * 13 3 2 30 30 H 1.08991 * 109.47203 * 299.99911 * 16 14 13 31 31 H 1.09003 * 109.47125 * 60.00361 * 16 14 13 32 32 H 1.09007 * 109.47195 * 180.02562 * 17 16 14 33 33 H 1.09005 * 109.47276 * 299.99887 * 17 16 14 34 34 H 1.09005 * 109.46986 * 59.99574 * 18 17 16 35 35 H 1.08994 * 109.47578 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.46923 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.46653 * 299.99399 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5961 1.9848 -0.8349 5 6 3.5404 1.4449 -0.1404 6 1 4.1572 1.8218 0.6621 7 6 4.1257 0.9662 -1.2933 8 7 3.3778 0.6469 -2.3268 9 14 5.9811 0.7708 -1.3872 10 1 6.3561 0.2416 -2.7230 11 1 6.6290 2.0905 -1.1773 12 1 6.4330 -0.1753 -0.3356 13 7 1.6651 2.0944 1.2619 14 6 1.6731 3.5567 1.1218 15 1 2.4126 3.8462 0.3752 16 6 2.0280 4.1959 2.4659 17 6 2.0356 5.7189 2.3200 18 6 0.6506 6.1960 1.8783 19 6 0.2957 5.5567 0.5343 20 6 0.2881 4.0337 0.6801 21 1 -0.4512 3.7439 1.4268 22 9 -0.0359 3.4492 -0.5489 23 1 -0.3633 -1.0245 0.0817 24 1 -0.3633 0.5829 0.8464 25 1 -0.3633 0.4415 -0.9279 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4111 0.6886 -2.2573 29 1 0.7672 1.7671 1.5853 30 1 1.2884 3.9065 3.2124 31 1 3.0145 3.8558 2.7808 32 1 2.2889 6.1743 3.2775 33 1 2.7750 6.0087 1.5734 34 1 -0.0887 5.9062 2.6250 35 1 0.6560 7.2810 1.7748 36 1 -0.6911 5.8962 0.2199 37 1 1.0351 5.8465 -0.2124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:03 Heat of formation + Delta-G solvation = -81.592559 kcal Electronic energy + Delta-G solvation = -17292.217969 eV Core-core repulsion = 14596.338860 eV Total energy + Delta-G solvation = -2695.879109 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.20055 -38.14250 -35.88974 -32.50619 -31.23514 -30.05720 -27.98721 -25.46280 -22.95726 -22.28797 -21.46170 -20.15369 -19.37708 -16.72950 -16.05104 -15.37434 -15.25543 -14.64392 -14.04283 -13.69159 -13.65108 -13.39409 -13.01981 -12.55617 -12.29130 -12.07745 -11.91820 -11.47085 -11.21098 -10.95411 -10.83955 -10.68564 -10.57413 -10.48930 -10.23417 -10.08737 -10.02334 -9.81445 -9.56122 -8.56679 -8.27056 -7.21676 -6.21288 -3.92365 3.48472 3.51244 3.69582 4.57983 4.65770 4.76345 4.87235 5.10195 5.20262 5.22951 5.43041 5.46682 5.62838 5.67825 5.73950 5.87352 6.01252 6.05624 6.06482 6.15634 6.19661 6.26238 6.31661 6.42914 6.61896 6.69871 6.72287 6.95270 6.99613 7.28433 7.49585 8.08675 8.17532 8.54507 8.74528 9.02888 9.77741 11.13585 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.009389 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.399966 B = 2981.482534 C = 3530.416482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.201 3.799 4 H 0.010 0.990 5 C -0.577 4.577 6 H 0.053 0.947 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.671 5.671 14 C 0.073 3.927 15 H 0.093 0.907 16 C -0.102 4.102 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.143 4.143 20 C 0.062 3.938 21 H 0.071 0.929 22 F -0.210 7.210 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.271 0.729 29 H 0.315 0.685 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 8.259 7.945 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.093 3.907 4 H 0.028 0.972 5 C -0.616 4.616 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.216 1.216 13 N -0.300 5.300 14 C -0.039 4.039 15 H 0.111 0.889 16 C -0.140 4.140 17 C -0.161 4.161 18 C -0.151 4.151 19 C -0.181 4.181 20 C 0.024 3.976 21 H 0.089 0.911 22 F -0.190 7.190 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.089 7.754 7.142 11.307 hybrid contribution -2.187 0.490 0.433 2.283 sum -6.277 8.243 7.575 12.834 Atomic orbital electron populations 1.21862 0.98855 0.99629 1.00374 1.21810 0.92084 1.00676 1.01942 1.19409 0.96229 0.89492 0.85535 0.97234 1.21951 0.90875 1.44580 1.04197 0.92883 1.25727 1.06734 0.94308 0.92080 1.70786 1.07306 1.47062 1.30243 0.83571 0.74637 0.76389 0.75803 1.21018 1.21697 1.21554 1.60735 1.32938 1.02376 1.33990 1.22058 0.93901 0.90176 0.97736 0.88923 1.21464 1.02553 0.93270 0.96711 1.21604 0.96797 0.96472 1.01229 1.21457 0.97668 0.99773 0.96206 1.22103 1.02485 0.94586 0.98953 1.22485 0.99765 0.92957 0.82371 0.91096 1.92815 1.94067 1.85806 1.46360 0.94214 0.94211 0.93552 0.91078 0.93158 0.91776 0.86726 0.92550 0.90656 0.91939 0.91681 0.92002 0.91744 0.91557 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.81 37.16 0.36 -2.58 16 2 C -0.13 -3.00 5.20 -26.73 -0.14 -3.14 16 3 C 0.20 5.06 1.33 -68.87 -0.09 4.97 16 4 H 0.01 0.28 5.78 -51.93 -0.30 -0.02 16 5 C -0.58 -16.33 8.25 -34.44 -0.28 -16.61 16 6 H 0.05 1.53 7.83 -52.48 -0.41 1.12 16 7 C 0.02 0.43 5.18 -17.82 -0.09 0.34 16 8 N -0.92 -27.84 13.03 55.43 0.72 -27.12 16 9 Si 1.07 25.71 29.91 -169.99 -5.08 20.63 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.67 -14.31 6.04 -100.95 -0.61 -14.92 16 14 C 0.07 1.37 2.17 -67.71 -0.15 1.22 16 15 H 0.09 2.06 7.45 -51.93 -0.39 1.67 16 16 C -0.10 -1.55 5.53 -26.73 -0.15 -1.70 16 17 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 18 C -0.11 -1.29 5.92 -26.73 -0.16 -1.44 16 19 C -0.14 -1.95 5.66 -26.73 -0.15 -2.10 16 20 C 0.06 1.04 3.20 -26.73 -0.09 0.95 16 21 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 22 F -0.21 -4.28 15.22 2.25 0.03 -4.25 16 23 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 24 H 0.04 0.72 6.31 -51.93 -0.33 0.39 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.86 6.13 -51.93 -0.32 1.55 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.27 8.23 5.88 -40.82 -0.24 7.99 16 29 H 0.31 6.18 6.14 -39.29 -0.24 5.94 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 286.91 15.07 4.32 4.32 Total: -1.00 -30.25 286.91 -7.80 -38.05 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.09 Total: 5.07 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -1.09 Total: -21.78 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.11 Total: -42.04 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.03 Total: -4.25 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.25 -7.80 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.545 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds