Wall clock time and date at job start Sun Mar 29 2020 21:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46995 * 2 1 4 4 H 1.09000 * 109.46825 * 305.66912 * 3 2 1 5 5 C 1.50694 * 109.47056 * 185.67169 * 3 2 1 6 6 H 1.08008 * 119.99291 * 244.40939 * 5 3 2 7 7 C 1.37875 * 120.00326 * 64.41634 * 5 3 2 8 8 N 1.31510 * 120.00086 * 7.57773 * 7 5 3 9 9 Si 1.86804 * 120.00017 * 187.58084 * 7 5 3 10 10 H 1.48490 * 109.46934 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46739 * 299.99739 * 9 7 5 12 12 H 1.48497 * 109.46958 * 59.99296 * 9 7 5 13 13 N 1.46894 * 109.46733 * 65.66668 * 3 2 1 14 14 C 1.46909 * 110.99933 * 201.15739 * 13 3 2 15 15 H 1.08998 * 109.46987 * 330.12000 * 14 13 3 16 16 C 1.53004 * 109.47041 * 210.11617 * 14 13 3 17 17 C 1.52995 * 109.46693 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47645 * 60.00135 * 17 16 14 19 19 C 1.53002 * 109.46882 * 300.00379 * 18 17 16 20 20 C 1.52993 * 109.47645 * 59.99289 * 19 18 17 21 21 H 1.08998 * 109.46885 * 59.99940 * 20 19 18 22 22 F 1.39897 * 109.47484 * 180.02562 * 20 19 18 23 23 H 1.09007 * 109.46717 * 184.55948 * 1 2 3 24 24 H 1.09002 * 109.47077 * 304.55772 * 1 2 3 25 25 H 1.08994 * 109.47239 * 64.55650 * 1 2 3 26 26 H 1.09000 * 109.47428 * 240.00681 * 2 1 3 27 27 H 1.08999 * 109.47502 * 119.99985 * 2 1 3 28 28 H 0.97007 * 120.00085 * 355.67770 * 8 7 5 29 29 H 1.00897 * 111.00943 * 325.11270 * 13 3 2 30 30 H 1.08991 * 109.47203 * 299.99911 * 16 14 13 31 31 H 1.09003 * 109.47125 * 60.00361 * 16 14 13 32 32 H 1.09007 * 109.47195 * 180.02562 * 17 16 14 33 33 H 1.09005 * 109.47276 * 299.99887 * 17 16 14 34 34 H 1.09005 * 109.46986 * 59.99574 * 18 17 16 35 35 H 1.08994 * 109.47578 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.46923 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.46653 * 299.99399 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5961 1.9848 -0.8349 5 6 3.5404 1.4449 -0.1404 6 1 4.1572 1.8218 0.6621 7 6 4.1257 0.9662 -1.2933 8 7 3.3778 0.6469 -2.3268 9 14 5.9811 0.7708 -1.3872 10 1 6.3561 0.2416 -2.7230 11 1 6.6290 2.0905 -1.1773 12 1 6.4330 -0.1753 -0.3356 13 7 1.6651 2.0944 1.2619 14 6 1.6731 3.5567 1.1218 15 1 2.4126 3.8462 0.3752 16 6 2.0280 4.1959 2.4659 17 6 2.0356 5.7189 2.3200 18 6 0.6506 6.1960 1.8783 19 6 0.2957 5.5567 0.5343 20 6 0.2881 4.0337 0.6801 21 1 -0.4512 3.7439 1.4268 22 9 -0.0359 3.4492 -0.5489 23 1 -0.3633 -1.0245 0.0817 24 1 -0.3633 0.5829 0.8464 25 1 -0.3633 0.4415 -0.9279 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4111 0.6886 -2.2573 29 1 0.7672 1.7671 1.5853 30 1 1.2884 3.9065 3.2124 31 1 3.0145 3.8558 2.7808 32 1 2.2889 6.1743 3.2775 33 1 2.7750 6.0087 1.5734 34 1 -0.0887 5.9062 2.6250 35 1 0.6560 7.2810 1.7748 36 1 -0.6911 5.8962 0.2199 37 1 1.0351 5.8465 -0.2124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:02 Heat of formation + Delta-G solvation = -100.380934 kcal Electronic energy + Delta-G solvation = -17293.032694 eV Core-core repulsion = 14596.338860 eV Total energy + Delta-G solvation = -2696.693834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.70111 -39.53992 -37.59849 -34.39551 -32.99200 -31.23530 -29.53797 -27.39699 -24.90600 -23.49542 -22.77912 -21.88150 -20.84249 -18.82271 -17.52834 -16.86747 -16.82446 -16.01740 -15.70631 -15.57103 -14.99243 -14.78021 -14.35007 -14.20087 -14.06503 -13.63405 -13.30333 -13.16957 -12.81012 -12.61314 -12.42349 -12.20609 -12.13875 -11.94841 -11.80350 -11.73542 -11.48363 -11.35996 -11.10179 -10.60545 -10.45269 -9.05406 -8.50133 -6.24033 1.50833 1.59177 1.78475 2.57920 3.21928 3.32901 3.48396 3.66583 3.83229 3.90977 4.12814 4.27112 4.29696 4.36846 4.42850 4.50205 4.52398 4.55629 4.79766 4.87991 4.93986 5.06930 5.09195 5.13122 5.14059 5.17892 5.26198 5.33838 5.39903 5.49562 5.55779 6.02184 6.17360 6.51885 6.59736 6.94422 7.54190 8.82251 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.009389 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.399966 B = 2981.482534 C = 3530.416482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.207 3.793 4 H -0.024 1.024 5 C -0.587 4.587 6 H 0.040 0.960 7 C -0.035 4.035 8 N -0.940 5.940 9 Si 1.112 2.888 10 H -0.285 1.285 11 H -0.275 1.275 12 H -0.272 1.272 13 N -0.673 5.673 14 C 0.072 3.928 15 H 0.045 0.955 16 C -0.094 4.094 17 C -0.120 4.120 18 C -0.106 4.106 19 C -0.139 4.139 20 C 0.056 3.944 21 H 0.098 0.902 22 F -0.235 7.235 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 9.349 9.950 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.099 3.901 4 H -0.006 1.006 5 C -0.626 4.626 6 H 0.059 0.941 7 C -0.232 4.232 8 N -0.578 5.578 9 Si 0.934 3.066 10 H -0.211 1.211 11 H -0.201 1.201 12 H -0.198 1.198 13 N -0.303 5.303 14 C -0.039 4.039 15 H 0.064 0.936 16 C -0.133 4.133 17 C -0.158 4.158 18 C -0.143 4.143 19 C -0.178 4.178 20 C 0.019 3.981 21 H 0.116 0.884 22 F -0.216 7.216 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.860 8.863 9.173 13.650 hybrid contribution -1.972 0.175 -0.162 1.987 sum -6.832 9.038 9.011 14.476 Atomic orbital electron populations 1.21727 0.95489 1.01614 1.00642 1.21649 0.95096 0.99045 1.00201 1.19147 0.94466 0.90379 0.86142 1.00598 1.22258 0.92734 1.43893 1.03721 0.94119 1.27107 1.10593 0.93689 0.91826 1.70900 1.06756 1.48997 1.31145 0.82998 0.70039 0.77382 0.76149 1.21065 1.20076 1.19769 1.60658 1.33808 1.04088 1.31780 1.22082 0.94330 0.88774 0.98763 0.93625 1.21412 1.02003 0.95174 0.94663 1.21601 0.97572 0.94209 1.02374 1.21462 0.97020 1.00967 0.94853 1.22107 1.03076 0.92229 1.00347 1.22715 0.98660 0.95016 0.81729 0.88406 1.92771 1.94141 1.86510 1.48214 0.91605 0.92249 0.94639 0.94250 0.93293 0.93137 0.85452 0.90433 0.92534 0.89151 0.93133 0.89960 0.89303 0.89712 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.81 71.98 0.71 -4.59 16 2 C -0.12 -5.85 5.20 30.60 0.16 -5.69 16 3 C 0.21 10.78 1.33 44.17 0.06 10.84 16 4 H -0.02 -1.37 5.78 -2.39 -0.01 -1.39 16 5 C -0.59 -34.31 8.25 25.60 0.21 -34.10 16 6 H 0.04 2.42 7.83 -2.91 -0.02 2.39 16 7 C -0.03 -2.04 5.18 84.65 0.44 -1.60 16 8 N -0.94 -59.07 13.03 21.45 0.28 -58.79 16 9 Si 1.11 52.44 29.91 68.60 2.05 54.49 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 N -0.67 -28.86 6.04 -473.29 -2.86 -31.71 16 14 C 0.07 2.70 2.17 44.91 0.10 2.80 16 15 H 0.05 2.13 7.45 -2.39 -0.02 2.12 16 16 C -0.09 -2.73 5.53 30.59 0.17 -2.56 16 17 C -0.12 -2.67 5.92 30.59 0.18 -2.49 16 18 C -0.11 -2.00 5.92 30.60 0.18 -1.82 16 19 C -0.14 -3.54 5.66 30.59 0.17 -3.37 16 20 C 0.06 1.82 3.20 30.59 0.10 1.92 16 21 H 0.10 2.65 8.12 -2.39 -0.02 2.63 16 22 F -0.24 -9.75 15.22 44.97 0.68 -9.07 16 23 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.06 2.04 6.31 -2.39 -0.02 2.02 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 2.13 6.13 -2.39 -0.01 2.12 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.26 16.48 5.88 -92.70 -0.55 15.93 16 29 H 0.33 12.46 6.14 -89.70 -0.55 11.91 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -68.43 286.91 3.34 -65.09 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.71 Total: 20.66 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 2.47 Total: -40.67 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -2.58 Total: -90.50 kcal Atomic # 9 Polarization: -9.75 SS G_CDS: 0.68 Total: -9.07 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 2.05 Total: 54.49 kcal Total: -68.43 3.34 -65.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.290 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds