Wall clock time and date at job start Sun Mar 29 2020 21:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.09003 * 109.47504 * 175.37249 * 3 2 1 5 5 C 1.50707 * 109.47133 * 55.37806 * 3 2 1 6 6 H 1.08003 * 119.99614 * 243.88185 * 5 3 2 7 7 C 1.37873 * 119.99835 * 63.87456 * 5 3 2 8 8 N 1.31513 * 120.00339 * 8.75362 * 7 5 3 9 9 Si 1.86805 * 119.99726 * 188.74455 * 7 5 3 10 10 H 1.48500 * 109.46905 * 60.00795 * 9 7 5 11 11 H 1.48500 * 109.47461 * 300.00607 * 9 7 5 12 12 H 1.48505 * 109.46803 * 180.02562 * 9 7 5 13 13 N 1.46897 * 109.47266 * 295.37836 * 3 2 1 14 14 C 1.46897 * 110.99886 * 273.98697 * 13 3 2 15 15 H 1.09000 * 109.47283 * 35.92369 * 14 13 3 16 16 C 1.53004 * 109.47240 * 275.92316 * 14 13 3 17 17 C 1.53004 * 109.47306 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47220 * 59.99716 * 17 16 14 19 19 C 1.53004 * 109.47213 * 300.00341 * 18 17 16 20 20 H 1.09003 * 109.47377 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.46914 * 299.99847 * 19 18 17 22 22 C 1.52998 * 109.47544 * 59.99880 * 19 18 17 23 23 H 1.08997 * 109.47391 * 305.23921 * 1 2 3 24 24 H 1.08998 * 109.47231 * 65.23670 * 1 2 3 25 25 H 1.09005 * 109.47244 * 185.23679 * 1 2 3 26 26 H 1.08997 * 109.47267 * 240.00529 * 2 1 3 27 27 H 1.08995 * 109.47170 * 119.99814 * 2 1 3 28 28 H 0.97004 * 119.99525 * 3.41946 * 8 7 5 29 29 H 1.00898 * 111.00646 * 37.94091 * 13 3 2 30 30 H 1.09007 * 109.46987 * 299.99544 * 16 14 13 31 31 H 1.08994 * 109.47323 * 59.99725 * 16 14 13 32 32 H 1.08998 * 109.46772 * 299.99558 * 17 16 14 33 33 H 1.09002 * 109.46913 * 179.97438 * 17 16 14 34 34 H 1.09004 * 109.47207 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.47377 * 60.00212 * 18 17 16 36 36 H 1.08998 * 109.47583 * 180.02562 * 22 19 18 37 37 H 1.09009 * 109.46924 * 59.99805 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1268 1.4437 0.0829 5 6 1.4463 2.1852 1.1693 6 1 0.7849 3.0217 0.9981 7 6 1.7474 1.7967 2.4574 8 7 2.6808 0.8953 2.6712 9 14 0.8295 2.5509 3.8991 10 1 -0.6213 2.2629 3.7674 11 1 1.0437 4.0204 3.9081 12 1 1.3370 1.9693 5.1677 13 7 1.6435 2.1020 -1.2513 14 6 2.6241 1.8462 -2.3148 15 1 3.0146 0.8337 -2.2130 16 6 3.7733 2.8499 -2.2012 17 6 4.7942 2.5838 -3.3093 18 6 4.1178 2.7352 -4.6732 19 6 2.9686 1.7315 -4.7867 20 1 2.4869 1.8390 -5.7586 21 9 3.4699 0.4319 -4.6566 22 6 1.9476 1.9975 -3.6788 23 1 -0.3634 0.5929 0.8393 24 1 -0.3633 0.4304 -0.9331 25 1 -0.3634 -1.0234 0.0938 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1917 0.5402 1.9270 29 1 0.7191 1.8139 -1.5349 30 1 3.3827 3.8625 -2.3031 31 1 4.2549 2.7424 -1.2294 32 1 5.1849 1.5713 -3.2078 33 1 5.6127 3.2992 -3.2286 34 1 4.8450 2.5452 -5.4626 35 1 3.7271 3.7477 -4.7746 36 1 1.1291 1.2822 -3.7594 37 1 1.5569 3.0102 -3.7802 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:06 Heat of formation + Delta-G solvation = -98.207213 kcal Electronic energy + Delta-G solvation = -17052.111160 eV Core-core repulsion = 14355.511585 eV Total energy + Delta-G solvation = -2696.599575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.62799 -39.68619 -37.43264 -34.34962 -32.59395 -31.46090 -29.60154 -27.23912 -25.51896 -23.69805 -22.99663 -21.32630 -20.55739 -18.73732 -17.57611 -16.53247 -16.41232 -16.19046 -15.83434 -15.58508 -15.33362 -15.08627 -14.37386 -14.35736 -14.00537 -13.26028 -13.23515 -13.11050 -12.71319 -12.59623 -12.51039 -12.33946 -12.09711 -11.94339 -11.90699 -11.71938 -11.63670 -11.25309 -10.93413 -10.63904 -10.34268 -9.05566 -8.51183 -6.19524 1.55224 1.62475 1.81291 2.60660 3.25232 3.32545 3.56455 3.65127 3.86347 4.02118 4.14386 4.25186 4.31693 4.36062 4.38242 4.41209 4.51382 4.52409 4.64129 4.88790 4.90563 5.00421 5.06449 5.11440 5.16659 5.20220 5.23133 5.29341 5.39708 5.47727 5.53749 6.01752 6.21289 6.56015 6.78344 6.80776 7.56375 8.84128 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.039609 B = 0.007054 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.732482 B = 3968.148816 C = 4229.939590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.143 4.143 3 C 0.211 3.789 4 H -0.013 1.013 5 C -0.573 4.573 6 H 0.047 0.953 7 C -0.030 4.030 8 N -0.939 5.939 9 Si 1.108 2.892 10 H -0.269 1.269 11 H -0.275 1.275 12 H -0.289 1.289 13 N -0.675 5.675 14 C 0.086 3.914 15 H 0.009 0.991 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.137 4.137 19 C 0.089 3.911 20 H 0.117 0.883 21 F -0.234 7.234 22 C -0.140 4.140 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.035 0.965 28 H 0.254 0.746 29 H 0.334 0.666 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 3.363 -15.216 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.183 4.183 3 C 0.102 3.898 4 H 0.004 0.996 5 C -0.612 4.612 6 H 0.066 0.934 7 C -0.228 4.228 8 N -0.578 5.578 9 Si 0.931 3.069 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.215 1.215 13 N -0.306 5.306 14 C -0.024 4.024 15 H 0.027 0.973 16 C -0.140 4.140 17 C -0.155 4.155 18 C -0.175 4.175 19 C 0.053 3.947 20 H 0.135 0.865 21 F -0.215 7.215 22 C -0.178 4.178 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.153 0.847 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.817 3.900 -13.401 13.981 hybrid contribution 0.400 -1.358 -1.349 1.956 sum -0.417 2.542 -14.750 14.974 Atomic orbital electron populations 1.21488 0.94629 1.00238 1.01589 1.22061 0.97935 1.00049 0.98283 1.19069 0.92913 0.89251 0.88558 0.99561 1.22074 1.30360 1.16648 0.92107 0.93444 1.27025 0.96843 0.95933 1.02990 1.70919 1.21701 1.30266 1.34897 0.83047 0.75498 0.75578 0.72782 1.19475 1.20088 1.21501 1.60710 1.04592 1.62343 1.02931 1.21449 0.93721 0.95902 0.91372 0.97255 1.21477 0.95475 0.99599 0.97480 1.21489 0.98041 1.01525 0.94431 1.22132 0.97541 1.00377 0.97405 1.21837 0.94963 0.77485 1.00432 0.86524 1.92761 1.89531 1.41707 1.97544 1.22279 0.98031 1.04560 0.92881 0.93002 0.92576 0.93336 0.95253 0.94578 0.93582 0.84716 0.90980 0.95595 0.93554 0.90091 0.89214 0.87990 0.91127 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.40 71.98 0.68 -4.39 16 2 C -0.14 -6.85 5.46 30.59 0.17 -6.68 16 3 C 0.21 10.77 1.76 44.17 0.08 10.85 16 4 H -0.01 -0.78 6.40 -2.39 -0.02 -0.80 16 5 C -0.57 -32.01 7.21 25.60 0.18 -31.83 16 6 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 7 C -0.03 -1.73 5.23 84.65 0.44 -1.29 16 8 N -0.94 -57.70 12.92 21.45 0.28 -57.42 16 9 Si 1.11 50.77 29.91 68.60 2.05 52.82 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 N -0.67 -28.47 6.04 -473.30 -2.86 -31.33 16 14 C 0.09 3.08 2.18 44.92 0.10 3.18 16 15 H 0.01 0.39 6.83 -2.39 -0.02 0.38 16 16 C -0.10 -3.49 5.40 30.60 0.17 -3.33 16 17 C -0.12 -3.08 5.80 30.59 0.18 -2.91 16 18 C -0.14 -2.67 5.72 30.59 0.17 -2.50 16 19 C 0.09 1.95 4.12 30.59 0.13 2.08 16 20 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 21 F -0.23 -6.85 16.05 44.97 0.72 -6.13 16 22 C -0.14 -3.63 5.00 30.59 0.15 -3.47 16 23 H 0.05 2.37 6.89 -2.39 -0.02 2.36 16 24 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 25 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.03 1.31 7.45 -2.39 -0.02 1.29 16 27 H 0.04 1.93 6.37 -2.39 -0.02 1.91 16 28 H 0.25 15.95 6.09 -92.71 -0.56 15.38 16 29 H 0.33 13.05 6.24 -89.70 -0.56 12.49 16 30 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.03 1.06 7.37 -2.39 -0.02 1.05 16 32 H 0.05 1.37 7.80 -2.39 -0.02 1.36 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 37 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -65.44 284.52 3.32 -62.12 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.69 Total: 20.23 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 2.44 Total: -40.29 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -2.58 Total: -88.75 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.72 Total: -6.13 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -65.44 3.32 -62.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.088 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds