Wall clock time and date at job start Sun Mar 29 2020 21:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46925 * 2 1 4 4 H 1.08993 * 109.47372 * 56.50369 * 3 2 1 5 5 C 1.50707 * 109.46561 * 176.49942 * 3 2 1 6 6 H 1.08007 * 119.99932 * 120.00112 * 5 3 2 7 7 C 1.37871 * 120.00368 * 299.99913 * 5 3 2 8 8 N 1.31519 * 119.99593 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00258 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47216 * 89.99919 * 9 7 5 11 11 H 1.48502 * 109.46976 * 210.00461 * 9 7 5 12 12 H 1.48506 * 109.46929 * 329.99673 * 9 7 5 13 13 N 1.46900 * 109.47335 * 296.49776 * 3 2 1 14 14 C 1.46899 * 110.99836 * 149.88272 * 13 3 2 15 15 H 1.08993 * 109.47428 * 326.35085 * 14 13 3 16 16 C 1.53001 * 109.47083 * 206.35091 * 14 13 3 17 17 C 1.52995 * 109.47080 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47482 * 59.99945 * 17 16 14 19 19 C 1.52995 * 109.46699 * 300.00163 * 18 17 16 20 20 H 1.09005 * 109.47275 * 179.97438 * 19 18 17 21 21 F 1.39898 * 109.47356 * 299.99665 * 19 18 17 22 22 C 1.53000 * 109.47741 * 59.99922 * 19 18 17 23 23 H 1.08996 * 109.47377 * 175.30338 * 1 2 3 24 24 H 1.09000 * 109.46925 * 295.29637 * 1 2 3 25 25 H 1.08998 * 109.47415 * 55.29595 * 1 2 3 26 26 H 1.09000 * 109.46344 * 240.00382 * 2 1 3 27 27 H 1.08992 * 109.47336 * 120.00532 * 2 1 3 28 28 H 0.97002 * 119.99502 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00158 * 273.83659 * 13 3 2 30 30 H 1.08997 * 109.47004 * 59.99938 * 16 14 13 31 31 H 1.09004 * 109.46667 * 299.99875 * 16 14 13 32 32 H 1.09003 * 109.47346 * 299.99943 * 17 16 14 33 33 H 1.08997 * 109.47278 * 179.97438 * 17 16 14 34 34 H 1.08995 * 109.47144 * 179.97438 * 18 17 16 35 35 H 1.09003 * 109.46832 * 59.99682 * 18 17 16 36 36 H 1.09004 * 109.46804 * 59.99346 * 22 19 18 37 37 H 1.08997 * 109.47732 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6264 1.9741 0.8569 5 6 3.5445 1.4433 0.0868 6 1 4.1306 1.8947 -0.7002 7 6 4.1729 0.8679 1.1707 8 7 3.4592 0.3178 2.1287 9 14 6.0378 0.8695 1.2785 10 1 6.4919 2.0962 1.9813 11 1 6.4911 -0.3283 2.0302 12 1 6.6128 0.8416 -0.0904 13 7 1.6206 2.1102 -1.2395 14 6 1.4288 3.5504 -1.0227 15 1 1.0546 3.7192 -0.0130 16 6 0.4184 4.0888 -2.0376 17 6 0.2191 5.5889 -1.8122 18 6 1.5552 6.3132 -1.9893 19 6 2.5655 5.7747 -0.9743 20 1 3.5175 6.2904 -1.1007 21 9 2.0855 5.9918 0.3217 22 6 2.7649 4.2746 -1.1997 23 1 -0.3634 -1.0242 -0.0841 24 1 -0.3633 0.4391 0.9291 25 1 -0.3634 0.5851 -0.8448 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.9014 -0.0874 2.8911 29 1 2.2817 1.9413 -1.9827 30 1 -0.5333 3.5725 -1.9118 31 1 0.7927 3.9200 -3.0474 32 1 -0.1549 5.7581 -0.8024 33 1 -0.5003 5.9726 -2.5356 34 1 1.4131 7.3819 -1.8291 35 1 1.9292 6.1440 -2.9990 36 1 3.1389 4.1055 -2.2095 37 1 3.4850 3.8911 -0.4769 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:08 Heat of formation + Delta-G solvation = -81.065817 kcal Electronic energy + Delta-G solvation = -17116.861697 eV Core-core repulsion = 14421.005429 eV Total energy + Delta-G solvation = -2695.856268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.24047 -37.95907 -35.28475 -32.31547 -31.14043 -30.01617 -28.13633 -25.81910 -22.75375 -22.28401 -21.26549 -19.73160 -19.05463 -16.58853 -16.13300 -15.10625 -14.99586 -14.73546 -14.20237 -13.78582 -13.50262 -13.08261 -12.65314 -12.52858 -12.10421 -11.82879 -11.52423 -11.26630 -11.16562 -11.10812 -10.99501 -10.70654 -10.67463 -10.39624 -10.17373 -9.91991 -9.85468 -9.52060 -9.25881 -8.93472 -8.35385 -7.23143 -5.98152 -4.10135 3.26846 3.34403 3.35917 4.39808 4.82092 4.84364 4.93574 5.14095 5.26528 5.39449 5.50275 5.64869 5.71948 5.73581 5.92298 6.03924 6.19051 6.29417 6.39280 6.43323 6.45069 6.55118 6.57572 6.75675 6.82900 6.94977 7.19047 7.21953 7.49487 7.62338 7.80213 8.12929 8.17402 8.37344 8.69868 9.02811 9.56688 11.02401 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.009570 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.501716 B = 2925.053421 C = 3727.394126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.099 3.901 15 H 0.073 0.927 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.143 4.143 19 C 0.094 3.906 20 H 0.071 0.929 21 F -0.213 7.213 22 C -0.175 4.175 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.089 0.911 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 8.397 -7.319 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.012 4.012 15 H 0.091 0.909 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.181 4.181 19 C 0.057 3.943 20 H 0.089 0.911 21 F -0.194 7.194 22 C -0.214 4.214 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.162 8.115 -7.011 11.504 hybrid contribution 2.128 0.312 0.298 2.171 sum -2.034 8.426 -6.714 10.965 Atomic orbital electron populations 1.21716 0.99126 0.98404 1.00362 1.21497 0.92009 0.99364 1.01558 1.19198 0.92677 0.91121 0.86313 0.95120 1.21859 0.92543 1.37631 1.06003 0.92697 1.24935 0.97821 0.95060 0.95732 1.69882 1.34862 1.37783 1.09655 0.86701 0.86320 0.77554 0.78049 1.20782 1.21183 1.20036 1.60922 1.52344 1.07349 1.10513 1.21379 0.92315 0.88841 0.98633 0.90869 1.21573 1.00067 0.93701 0.99272 1.21497 0.96101 0.96073 1.02030 1.22117 0.96603 0.99919 0.99432 1.21538 0.96522 0.98042 0.78211 0.91054 1.92784 1.90169 1.96057 1.40441 1.23004 1.01863 0.93236 1.03328 0.95751 0.94661 0.93071 0.95160 0.89321 0.92921 0.85590 0.91606 0.92582 0.91616 0.92156 0.91663 0.90608 0.91246 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 37.16 0.37 -2.53 16 2 C -0.11 -2.54 5.44 -26.73 -0.15 -2.69 16 3 C 0.21 5.25 2.01 -68.86 -0.14 5.11 16 4 H 0.03 0.85 7.32 -51.93 -0.38 0.47 16 5 C -0.54 -14.21 7.14 -34.44 -0.25 -14.45 16 6 H 0.05 1.41 6.95 -52.48 -0.36 1.05 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.99 11.30 55.43 0.63 -24.36 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -14.00 5.37 -100.95 -0.54 -14.54 16 14 C 0.10 1.82 2.35 -67.71 -0.16 1.66 16 15 H 0.07 1.54 7.01 -51.93 -0.36 1.18 16 16 C -0.11 -1.62 5.53 -26.73 -0.15 -1.76 16 17 C -0.12 -1.55 5.80 -26.73 -0.16 -1.71 16 18 C -0.14 -1.76 5.72 -26.73 -0.15 -1.92 16 19 C 0.09 1.41 4.12 -26.73 -0.11 1.30 16 20 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 21 F -0.21 -3.84 16.04 2.25 0.04 -3.81 16 22 C -0.18 -3.01 4.65 -26.73 -0.12 -3.14 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 1.03 7.58 -51.93 -0.39 0.63 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.38 5.98 -51.93 -0.31 2.07 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.61 8.01 -39.29 -0.31 6.30 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.93 7.80 -51.93 -0.41 0.53 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 37 H 0.09 1.95 6.27 -51.93 -0.33 1.63 16 LS Contribution 288.11 15.07 4.34 4.34 Total: -1.00 -27.28 288.11 -7.89 -35.17 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.22 Total: 5.58 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.11 Total: -18.39 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.08 Total: -38.90 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.28 -7.89 -35.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.896 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds