Wall clock time and date at job start Sun Mar 29 2020 21:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46925 * 2 1 4 4 H 1.08993 * 109.47372 * 56.50369 * 3 2 1 5 5 C 1.50707 * 109.46561 * 176.49942 * 3 2 1 6 6 H 1.08007 * 119.99932 * 120.00112 * 5 3 2 7 7 C 1.37871 * 120.00368 * 299.99913 * 5 3 2 8 8 N 1.31519 * 119.99593 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00258 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47216 * 89.99919 * 9 7 5 11 11 H 1.48502 * 109.46976 * 210.00461 * 9 7 5 12 12 H 1.48506 * 109.46929 * 329.99673 * 9 7 5 13 13 N 1.46900 * 109.47335 * 296.49776 * 3 2 1 14 14 C 1.46899 * 110.99836 * 149.88272 * 13 3 2 15 15 H 1.08993 * 109.47428 * 326.35085 * 14 13 3 16 16 C 1.53001 * 109.47083 * 206.35091 * 14 13 3 17 17 C 1.52995 * 109.47080 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47482 * 59.99945 * 17 16 14 19 19 C 1.52995 * 109.46699 * 300.00163 * 18 17 16 20 20 H 1.09005 * 109.47275 * 179.97438 * 19 18 17 21 21 F 1.39898 * 109.47356 * 299.99665 * 19 18 17 22 22 C 1.53000 * 109.47741 * 59.99922 * 19 18 17 23 23 H 1.08996 * 109.47377 * 175.30338 * 1 2 3 24 24 H 1.09000 * 109.46925 * 295.29637 * 1 2 3 25 25 H 1.08998 * 109.47415 * 55.29595 * 1 2 3 26 26 H 1.09000 * 109.46344 * 240.00382 * 2 1 3 27 27 H 1.08992 * 109.47336 * 120.00532 * 2 1 3 28 28 H 0.97002 * 119.99502 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00158 * 273.83659 * 13 3 2 30 30 H 1.08997 * 109.47004 * 59.99938 * 16 14 13 31 31 H 1.09004 * 109.46667 * 299.99875 * 16 14 13 32 32 H 1.09003 * 109.47346 * 299.99943 * 17 16 14 33 33 H 1.08997 * 109.47278 * 179.97438 * 17 16 14 34 34 H 1.08995 * 109.47144 * 179.97438 * 18 17 16 35 35 H 1.09003 * 109.46832 * 59.99682 * 18 17 16 36 36 H 1.09004 * 109.46804 * 59.99346 * 22 19 18 37 37 H 1.08997 * 109.47732 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6264 1.9741 0.8569 5 6 3.5445 1.4433 0.0868 6 1 4.1306 1.8947 -0.7002 7 6 4.1729 0.8679 1.1707 8 7 3.4592 0.3178 2.1287 9 14 6.0378 0.8695 1.2785 10 1 6.4919 2.0962 1.9813 11 1 6.4911 -0.3283 2.0302 12 1 6.6128 0.8416 -0.0904 13 7 1.6206 2.1102 -1.2395 14 6 1.4288 3.5504 -1.0227 15 1 1.0546 3.7192 -0.0130 16 6 0.4184 4.0888 -2.0376 17 6 0.2191 5.5889 -1.8122 18 6 1.5552 6.3132 -1.9893 19 6 2.5655 5.7747 -0.9743 20 1 3.5175 6.2904 -1.1007 21 9 2.0855 5.9918 0.3217 22 6 2.7649 4.2746 -1.1997 23 1 -0.3634 -1.0242 -0.0841 24 1 -0.3633 0.4391 0.9291 25 1 -0.3634 0.5851 -0.8448 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.9014 -0.0874 2.8911 29 1 2.2817 1.9413 -1.9827 30 1 -0.5333 3.5725 -1.9118 31 1 0.7927 3.9200 -3.0474 32 1 -0.1549 5.7581 -0.8024 33 1 -0.5003 5.9726 -2.5356 34 1 1.4131 7.3819 -1.8291 35 1 1.9292 6.1440 -2.9990 36 1 3.1389 4.1055 -2.2095 37 1 3.4850 3.8911 -0.4769 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:08 Heat of formation + Delta-G solvation = -96.713230 kcal Electronic energy + Delta-G solvation = -17117.540219 eV Core-core repulsion = 14421.005429 eV Total energy + Delta-G solvation = -2696.534791 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.56638 -39.41247 -36.95404 -34.15080 -32.88021 -31.25303 -29.71411 -27.67066 -24.62302 -23.51108 -22.62662 -21.50476 -20.50670 -18.55576 -17.45456 -16.85286 -16.35962 -16.17860 -15.61830 -15.44183 -15.01576 -14.81839 -14.30204 -13.83231 -13.55176 -13.22323 -13.18377 -12.96271 -12.87607 -12.81996 -12.56954 -12.37491 -12.15647 -11.91979 -11.56048 -11.52745 -11.48793 -11.21035 -10.91876 -10.71480 -10.43466 -8.98763 -8.03850 -6.24367 1.36923 1.38516 1.47105 2.39865 3.15996 3.54925 3.71451 3.77054 3.94192 4.06875 4.24940 4.44074 4.54499 4.55359 4.61550 4.65413 4.78416 4.83178 4.93384 5.05900 5.12052 5.14403 5.22494 5.23662 5.32417 5.42945 5.51869 5.53972 5.60725 5.67223 5.79998 6.12896 6.22913 6.43389 6.86144 7.07597 7.46140 8.93375 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.009570 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.501716 B = 2925.053421 C = 3727.394126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.012 1.012 5 C -0.546 4.546 6 H 0.058 0.942 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.675 5.675 14 C 0.098 3.902 15 H 0.034 0.966 16 C -0.098 4.098 17 C -0.117 4.117 18 C -0.135 4.135 19 C 0.085 3.915 20 H 0.094 0.906 21 F -0.235 7.235 22 C -0.170 4.170 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.260 0.740 29 H 0.332 0.668 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 9.573 -9.594 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.006 0.994 5 C -0.585 4.585 6 H 0.076 0.924 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.303 5.303 14 C -0.013 4.013 15 H 0.053 0.947 16 C -0.137 4.137 17 C -0.155 4.155 18 C -0.172 4.172 19 C 0.049 3.951 20 H 0.112 0.888 21 F -0.217 7.217 22 C -0.209 4.209 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.025 9.304 -9.304 13.760 hybrid contribution 2.066 -0.037 1.012 2.301 sum -1.959 9.267 -8.293 12.589 Atomic orbital electron populations 1.21575 0.96626 0.99919 1.00257 1.21364 0.94255 0.98560 0.99961 1.18925 0.91743 0.91292 0.86554 0.99426 1.22171 0.93622 1.36818 1.05914 0.92365 1.25698 1.02037 0.95061 0.95640 1.70029 1.36422 1.38761 1.10173 0.85722 0.81337 0.77270 0.78310 1.20812 1.21077 1.18963 1.60876 1.51864 1.08846 1.08720 1.21410 0.94105 0.87798 0.97941 0.94745 1.21482 0.98436 0.95025 0.98711 1.21498 0.97462 0.94605 1.01914 1.22112 0.94956 1.00691 0.99486 1.21826 0.98787 0.96582 0.77938 0.88848 1.92746 1.90542 1.96042 1.42345 1.22870 0.99875 0.94945 1.03249 0.93551 0.95609 0.92071 0.95116 0.92388 0.93117 0.85084 0.92185 0.90714 0.93470 0.89123 0.89709 0.88098 0.88998 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 9.85 71.98 0.71 -4.55 16 2 C -0.10 -5.03 5.44 30.59 0.17 -4.87 16 3 C 0.22 11.29 2.01 44.17 0.09 11.38 16 4 H -0.01 -0.72 7.32 -2.39 -0.02 -0.73 16 5 C -0.55 -29.26 7.14 25.60 0.18 -29.08 16 6 H 0.06 3.01 6.95 -2.91 -0.02 2.99 16 7 C 0.02 0.84 5.30 84.65 0.45 1.28 16 8 N -0.91 -53.41 11.30 21.45 0.24 -53.17 16 9 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.68 -27.70 5.37 -473.31 -2.54 -30.24 16 14 C 0.10 3.60 2.35 44.92 0.11 3.71 16 15 H 0.03 1.52 7.01 -2.39 -0.02 1.50 16 16 C -0.10 -2.74 5.53 30.59 0.17 -2.57 16 17 C -0.12 -2.72 5.80 30.59 0.18 -2.54 16 18 C -0.13 -2.83 5.72 30.59 0.17 -2.66 16 19 C 0.09 2.42 4.12 30.59 0.13 2.54 16 20 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 21 F -0.24 -8.50 16.04 44.97 0.72 -7.78 16 22 C -0.17 -5.74 4.65 30.60 0.14 -5.59 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 26 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 3.21 5.98 -2.39 -0.01 3.20 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.33 13.13 8.01 -89.69 -0.72 12.42 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.28 7.80 -2.39 -0.02 1.26 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 2.65 8.13 -2.39 -0.02 2.63 16 37 H 0.05 2.24 6.27 -2.39 -0.01 2.23 16 Total: -1.00 -60.89 288.11 3.26 -57.63 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.32 Total: 20.78 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 2.49 Total: -32.95 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.30 Total: -83.42 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.72 Total: -7.78 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -60.89 3.26 -57.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.079 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds