Wall clock time and date at job start Sun Mar 29 2020 21:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46895 * 2 1 4 4 H 1.08993 * 109.47297 * 304.24027 * 3 2 1 5 5 C 1.50706 * 109.47037 * 184.24265 * 3 2 1 6 6 H 1.07996 * 120.00010 * 240.00499 * 5 3 2 7 7 C 1.37878 * 119.99847 * 59.99750 * 5 3 2 8 8 N 1.31512 * 120.00323 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99660 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47357 * 60.00125 * 9 7 5 11 11 H 1.48498 * 109.46732 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46953 * 299.99838 * 9 7 5 13 13 N 1.46897 * 109.47395 * 64.24449 * 3 2 1 14 14 C 1.46898 * 111.00068 * 205.89953 * 13 3 2 15 15 C 1.53003 * 109.47210 * 174.69487 * 14 13 3 16 16 H 1.08999 * 110.05544 * 306.41791 * 15 14 13 17 17 C 1.54256 * 110.03405 * 185.00039 * 15 14 13 18 18 C 1.54891 * 104.31496 * 217.17535 * 17 15 14 19 19 C 1.54890 * 102.75108 * 37.86962 * 18 17 15 20 20 C 1.54088 * 110.15743 * 67.88023 * 15 14 13 21 21 H 1.09000 * 109.97461 * 359.85906 * 20 15 14 22 22 F 1.39897 * 110.11147 * 238.46059 * 20 15 14 23 23 H 1.09006 * 109.46979 * 174.92965 * 1 2 3 24 24 H 1.08993 * 109.47299 * 294.93481 * 1 2 3 25 25 H 1.09002 * 109.46886 * 54.93719 * 1 2 3 26 26 H 1.08997 * 109.47474 * 240.00096 * 2 1 3 27 27 H 1.08998 * 109.47321 * 119.99902 * 2 1 3 28 28 H 0.96997 * 120.00320 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00226 * 81.93633 * 13 3 2 30 30 H 1.08995 * 109.46946 * 54.69295 * 14 13 3 31 31 H 1.09000 * 109.46573 * 294.69362 * 14 13 3 32 32 H 1.09000 * 110.49336 * 98.42500 * 17 15 14 33 33 H 1.09006 * 110.48599 * 335.91601 * 17 15 14 34 34 H 1.08997 * 110.76061 * 156.19372 * 18 17 15 35 35 H 1.09008 * 110.75118 * 279.55625 * 18 17 15 36 36 H 1.09004 * 110.48170 * 80.73833 * 19 18 17 37 37 H 1.08994 * 110.48940 * 203.25454 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4439 -0.1051 6 1 4.1389 1.8918 0.6765 7 6 4.1584 0.8731 -1.1992 8 7 3.4332 0.3279 -2.1512 9 14 6.0219 0.8741 -1.3291 10 1 6.5992 0.1445 -0.1717 11 1 6.4304 0.2053 -2.5903 12 1 6.5173 2.2741 -1.3288 13 7 1.6358 2.1048 1.2474 14 6 1.5384 3.5590 1.0637 15 6 0.9897 4.1988 2.3406 16 1 0.0536 3.7192 2.6265 17 6 0.7640 5.7088 2.1203 18 6 1.1616 6.3564 3.4700 19 6 2.3810 5.5087 3.9099 20 6 2.0171 4.0718 3.4819 21 1 2.9064 3.5516 3.1262 22 9 1.4557 3.3786 4.5596 23 1 -0.3633 -1.0237 -0.0908 24 1 -0.3633 0.4332 0.9318 25 1 -0.3633 0.5904 -0.8412 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8659 -0.0740 -2.9207 29 1 2.2687 1.8769 1.9994 30 1 0.8685 3.7761 0.2317 31 1 2.5270 3.9651 0.8497 32 1 -0.2834 5.9092 1.8948 33 1 1.4032 6.0769 1.3177 34 1 1.4464 7.3990 3.3293 35 1 0.3505 6.2707 4.1932 36 1 3.2828 5.8427 3.3967 37 1 2.5149 5.5647 4.9901 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:57 Heat of formation + Delta-G solvation = -81.720908 kcal Electronic energy + Delta-G solvation = -16675.337105 eV Core-core repulsion = 13979.452430 eV Total energy + Delta-G solvation = -2695.884675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.27983 -37.89537 -35.77246 -32.60095 -31.25527 -28.97580 -27.97076 -26.07116 -23.40536 -22.21517 -20.77838 -19.56296 -19.37294 -16.94083 -16.24360 -15.69300 -14.81248 -14.74249 -14.32231 -13.70709 -13.63002 -13.24946 -12.88524 -12.46692 -12.32958 -12.06975 -11.34164 -11.28950 -11.16997 -11.04671 -10.95239 -10.68966 -10.68897 -10.50738 -10.39240 -10.22801 -9.98168 -9.58207 -9.40859 -9.05959 -8.38734 -7.24939 -6.00540 -4.13945 3.26473 3.32038 3.34079 4.37811 4.51081 4.53890 4.74658 5.06105 5.22128 5.30747 5.40863 5.51395 5.61504 5.66731 5.78514 5.84707 5.98978 6.04516 6.14140 6.32189 6.38849 6.39724 6.50137 6.53723 6.73809 6.75497 7.14959 7.20066 7.45108 7.59935 7.77128 8.09051 8.14161 8.33315 8.65517 8.98707 9.53654 10.99483 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.007472 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.199349 B = 3746.479873 C = 4286.981529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.690 5.690 14 C 0.074 3.926 15 C -0.114 4.114 16 H 0.090 0.910 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.151 4.151 20 C 0.089 3.911 21 H 0.085 0.915 22 F -0.214 7.214 23 H 0.024 0.976 24 H 0.047 0.953 25 H 0.036 0.964 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.326 0.674 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 8.991 8.029 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.320 5.320 14 C -0.056 4.056 15 C -0.133 4.133 16 H 0.108 0.892 17 C -0.157 4.157 18 C -0.161 4.161 19 C -0.189 4.189 20 C 0.052 3.948 21 H 0.103 0.897 22 F -0.195 7.195 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.207 8.753 7.746 12.423 hybrid contribution 2.076 0.131 -0.178 2.088 sum -2.131 8.884 7.568 11.864 Atomic orbital electron populations 1.21685 0.98987 0.98261 1.00378 1.21495 0.92113 0.99232 1.01642 1.19149 0.92628 0.91225 0.86263 0.95034 1.21824 0.92733 1.38219 1.05823 0.93035 1.24928 0.97941 0.94958 0.95638 1.69865 1.34984 1.37889 1.09527 0.86725 0.86087 0.78163 0.77413 1.20268 1.21184 1.20422 1.60899 1.55344 1.05961 1.09765 1.21806 0.98744 0.90238 0.94804 1.22511 0.99353 0.95890 0.95524 0.89213 1.22394 1.01596 0.94376 0.97333 1.22487 0.97506 0.98759 0.97345 1.22984 0.99273 0.94729 1.01904 1.22340 0.96648 0.91655 0.84126 0.89731 1.92790 1.87338 1.81313 1.58061 0.95689 0.93434 0.94503 0.89221 0.95101 0.92795 0.85782 0.91605 0.95260 0.91360 0.91107 0.91413 0.91399 0.90156 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.73 37.16 0.36 -2.49 16 2 C -0.11 -2.58 5.45 -26.73 -0.15 -2.72 16 3 C 0.22 5.32 1.98 -68.86 -0.14 5.18 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.66 8.47 -34.44 -0.29 -14.95 16 6 H 0.05 1.36 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.94 11.30 55.43 0.63 -24.32 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.69 -14.49 5.73 -107.95 -0.62 -15.11 16 14 C 0.07 1.35 4.62 -3.82 -0.02 1.33 16 15 C -0.11 -1.70 3.01 -89.39 -0.27 -1.97 16 16 H 0.09 1.44 8.02 -51.93 -0.42 1.02 16 17 C -0.12 -1.45 6.35 -25.08 -0.16 -1.60 16 18 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 19 C -0.15 -1.79 6.62 -25.07 -0.17 -1.95 16 20 C 0.09 1.30 3.93 -25.50 -0.10 1.20 16 21 H 0.08 1.32 6.96 -51.93 -0.36 0.96 16 22 F -0.21 -3.54 17.06 2.25 0.04 -3.51 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.87 7.29 -39.29 -0.29 6.58 16 30 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 31 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -27.53 296.16 -8.05 -35.58 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.34 Total: 4.60 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.19 Total: -17.72 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.01 Total: -39.42 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.51 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.53 -8.05 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.142 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds