Wall clock time and date at job start Sun Mar 29 2020 21:38:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53003 * 109.46895 * 2 1
4 4 H 1.08993 * 109.47297 * 304.24027 * 3 2 1
5 5 C 1.50706 * 109.47037 * 184.24265 * 3 2 1
6 6 H 1.07996 * 120.00010 * 240.00499 * 5 3 2
7 7 C 1.37878 * 119.99847 * 59.99750 * 5 3 2
8 8 N 1.31512 * 120.00323 * 0.02562 * 7 5 3
9 9 Si 1.86804 * 119.99660 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.47357 * 60.00125 * 9 7 5
11 11 H 1.48498 * 109.46732 * 180.02562 * 9 7 5
12 12 H 1.48502 * 109.46953 * 299.99838 * 9 7 5
13 13 N 1.46897 * 109.47395 * 64.24449 * 3 2 1
14 14 C 1.46898 * 111.00068 * 205.89953 * 13 3 2
15 15 C 1.53003 * 109.47210 * 174.69487 * 14 13 3
16 16 H 1.08999 * 110.05544 * 306.41791 * 15 14 13
17 17 C 1.54256 * 110.03405 * 185.00039 * 15 14 13
18 18 C 1.54891 * 104.31496 * 217.17535 * 17 15 14
19 19 C 1.54890 * 102.75108 * 37.86962 * 18 17 15
20 20 C 1.54088 * 110.15743 * 67.88023 * 15 14 13
21 21 H 1.09000 * 109.97461 * 359.85906 * 20 15 14
22 22 F 1.39897 * 110.11147 * 238.46059 * 20 15 14
23 23 H 1.09006 * 109.46979 * 174.92965 * 1 2 3
24 24 H 1.08993 * 109.47299 * 294.93481 * 1 2 3
25 25 H 1.09002 * 109.46886 * 54.93719 * 1 2 3
26 26 H 1.08997 * 109.47474 * 240.00096 * 2 1 3
27 27 H 1.08998 * 109.47321 * 119.99902 * 2 1 3
28 28 H 0.96997 * 120.00320 * 180.02562 * 8 7 5
29 29 H 1.00901 * 111.00226 * 81.93633 * 13 3 2
30 30 H 1.08995 * 109.46946 * 54.69295 * 14 13 3
31 31 H 1.09000 * 109.46573 * 294.69362 * 14 13 3
32 32 H 1.09000 * 110.49336 * 98.42500 * 17 15 14
33 33 H 1.09006 * 110.48599 * 335.91601 * 17 15 14
34 34 H 1.08997 * 110.76061 * 156.19372 * 18 17 15
35 35 H 1.09008 * 110.75118 * 279.55625 * 18 17 15
36 36 H 1.09004 * 110.48170 * 80.73833 * 19 18 17
37 37 H 1.08994 * 110.48940 * 203.25454 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6159 1.9778 -0.8495
5 6 3.5433 1.4439 -0.1051
6 1 4.1389 1.8918 0.6765
7 6 4.1584 0.8731 -1.1992
8 7 3.4332 0.3279 -2.1512
9 14 6.0219 0.8741 -1.3291
10 1 6.5992 0.1445 -0.1717
11 1 6.4304 0.2053 -2.5903
12 1 6.5173 2.2741 -1.3288
13 7 1.6358 2.1048 1.2474
14 6 1.5384 3.5590 1.0637
15 6 0.9897 4.1988 2.3406
16 1 0.0536 3.7192 2.6265
17 6 0.7640 5.7088 2.1203
18 6 1.1616 6.3564 3.4700
19 6 2.3810 5.5087 3.9099
20 6 2.0171 4.0718 3.4819
21 1 2.9064 3.5516 3.1262
22 9 1.4557 3.3786 4.5596
23 1 -0.3633 -1.0237 -0.0908
24 1 -0.3633 0.4332 0.9318
25 1 -0.3633 0.5904 -0.8412
26 1 1.8934 -0.5138 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 3.8659 -0.0740 -2.9207
29 1 2.2687 1.8769 1.9994
30 1 0.8685 3.7761 0.2317
31 1 2.5270 3.9651 0.8497
32 1 -0.2834 5.9092 1.8948
33 1 1.4032 6.0769 1.3177
34 1 1.4464 7.3990 3.3293
35 1 0.3505 6.2707 4.1932
36 1 3.2828 5.8427 3.3967
37 1 2.5149 5.5647 4.9901
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255152530.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:38:57
Heat of formation + Delta-G solvation = -81.720908 kcal
Electronic energy + Delta-G solvation = -16675.337105 eV
Core-core repulsion = 13979.452430 eV
Total energy + Delta-G solvation = -2695.884675 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.154 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-47.27983 -37.89537 -35.77246 -32.60095 -31.25527 -28.97580 -27.97076 -26.07116
-23.40536 -22.21517 -20.77838 -19.56296 -19.37294 -16.94083 -16.24360 -15.69300
-14.81248 -14.74249 -14.32231 -13.70709 -13.63002 -13.24946 -12.88524 -12.46692
-12.32958 -12.06975 -11.34164 -11.28950 -11.16997 -11.04671 -10.95239 -10.68966
-10.68897 -10.50738 -10.39240 -10.22801 -9.98168 -9.58207 -9.40859 -9.05959
-8.38734 -7.24939 -6.00540 -4.13945 3.26473 3.32038 3.34079 4.37811
4.51081 4.53890 4.74658 5.06105 5.22128 5.30747 5.40863 5.51395
5.61504 5.66731 5.78514 5.84707 5.98978 6.04516 6.14140 6.32189
6.38849 6.39724 6.50137 6.53723 6.73809 6.75497 7.14959 7.20066
7.45108 7.59935 7.77128 8.09051 8.14161 8.33315 8.65517 8.98707
9.53654 10.99483
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.025513 B = 0.007472 C = 0.006530
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1097.199349 B = 3746.479873 C = 4286.981529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.106 4.106
3 C 0.215 3.785
4 H 0.032 0.968
5 C -0.547 4.547
6 H 0.051 0.949
7 C 0.068 3.932
8 N -0.885 5.885
9 Si 0.888 3.112
10 H -0.277 1.277
11 H -0.286 1.286
12 H -0.279 1.279
13 N -0.690 5.690
14 C 0.074 3.926
15 C -0.114 4.114
16 H 0.090 0.910
17 C -0.119 4.119
18 C -0.123 4.123
19 C -0.151 4.151
20 C 0.089 3.911
21 H 0.085 0.915
22 F -0.214 7.214
23 H 0.024 0.976
24 H 0.047 0.953
25 H 0.036 0.964
26 H 0.090 0.910
27 H 0.030 0.970
28 H 0.262 0.738
29 H 0.326 0.674
30 H 0.065 0.935
31 H 0.029 0.971
32 H 0.068 0.932
33 H 0.070 0.930
34 H 0.067 0.933
35 H 0.067 0.933
36 H 0.080 0.920
37 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.529 8.991 8.029 12.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.145 4.145
3 C 0.107 3.893
4 H 0.050 0.950
5 C -0.586 4.586
6 H 0.070 0.930
7 C -0.135 4.135
8 N -0.523 5.523
9 Si 0.716 3.284
10 H -0.203 1.203
11 H -0.212 1.212
12 H -0.204 1.204
13 N -0.320 5.320
14 C -0.056 4.056
15 C -0.133 4.133
16 H 0.108 0.892
17 C -0.157 4.157
18 C -0.161 4.161
19 C -0.189 4.189
20 C 0.052 3.948
21 H 0.103 0.897
22 F -0.195 7.195
23 H 0.043 0.957
24 H 0.066 0.934
25 H 0.055 0.945
26 H 0.108 0.892
27 H 0.049 0.951
28 H 0.072 0.928
29 H 0.142 0.858
30 H 0.084 0.916
31 H 0.047 0.953
32 H 0.086 0.914
33 H 0.089 0.911
34 H 0.086 0.914
35 H 0.086 0.914
36 H 0.098 0.902
37 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -4.207 8.753 7.746 12.423
hybrid contribution 2.076 0.131 -0.178 2.088
sum -2.131 8.884 7.568 11.864
Atomic orbital electron populations
1.21685 0.98987 0.98261 1.00378 1.21495 0.92113 0.99232 1.01642
1.19149 0.92628 0.91225 0.86263 0.95034 1.21824 0.92733 1.38219
1.05823 0.93035 1.24928 0.97941 0.94958 0.95638 1.69865 1.34984
1.37889 1.09527 0.86725 0.86087 0.78163 0.77413 1.20268 1.21184
1.20422 1.60899 1.55344 1.05961 1.09765 1.21806 0.98744 0.90238
0.94804 1.22511 0.99353 0.95890 0.95524 0.89213 1.22394 1.01596
0.94376 0.97333 1.22487 0.97506 0.98759 0.97345 1.22984 0.99273
0.94729 1.01904 1.22340 0.96648 0.91655 0.84126 0.89731 1.92790
1.87338 1.81313 1.58061 0.95689 0.93434 0.94503 0.89221 0.95101
0.92795 0.85782 0.91605 0.95260 0.91360 0.91107 0.91413 0.91399
0.90156 0.90715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.85 9.73 37.16 0.36 -2.49 16
2 C -0.11 -2.58 5.45 -26.73 -0.15 -2.72 16
3 C 0.22 5.32 1.98 -68.86 -0.14 5.18 16
4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16
5 C -0.55 -14.66 8.47 -34.44 -0.29 -14.95 16
6 H 0.05 1.36 7.73 -52.49 -0.41 0.96 16
7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16
8 N -0.88 -24.94 11.30 55.43 0.63 -24.32 16
9 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16
10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16
13 N -0.69 -14.49 5.73 -107.95 -0.62 -15.11 16
14 C 0.07 1.35 4.62 -3.82 -0.02 1.33 16
15 C -0.11 -1.70 3.01 -89.39 -0.27 -1.97 16
16 H 0.09 1.44 8.02 -51.93 -0.42 1.02 16
17 C -0.12 -1.45 6.35 -25.08 -0.16 -1.60 16
18 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16
19 C -0.15 -1.79 6.62 -25.07 -0.17 -1.95 16
20 C 0.09 1.30 3.93 -25.50 -0.10 1.20 16
21 H 0.08 1.32 6.96 -51.93 -0.36 0.96 16
22 F -0.21 -3.54 17.06 2.25 0.04 -3.51 16
23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16
25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
26 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16
27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
29 H 0.33 6.87 7.29 -39.29 -0.29 6.58 16
30 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16
31 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16
32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16
34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16
36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16
37 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16
LS Contribution 296.16 15.07 4.46 4.46
Total: -1.00 -27.53 296.16 -8.05 -35.58
By element:
Atomic # 1 Polarization: 10.94 SS G_CDS: -6.34 Total: 4.60 kcal
Atomic # 6 Polarization: -16.53 SS G_CDS: -1.19 Total: -17.72 kcal
Atomic # 7 Polarization: -39.43 SS G_CDS: 0.01 Total: -39.42 kcal
Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.51 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -27.53 -8.05 -35.58 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255152530.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.142 kcal
(2) G-P(sol) polarization free energy of solvation -27.532 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.675 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds